Prupe.3G241500_v2.0.a1

Transmembrane protein 33 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013573
Physical Location & Seq
Reverse (-)
23491839 .. 23495988
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G241500.1

Sequence Viewer

Length: 1020 bp
ATGGGGGAGGAGAGAGAGGACCCACAGAAGCTGAAGAGAATCGCAGCGGCTGCCTACGACTACGAGAACGACTCAAGATGGGCCGACTACTGGTCCAACATCCTCATCCCTCCTCACATGGCCTCTCGCAGCGACGTCGTCGACCATTTCAAGCGCAAGTTCTACCAGCGCTTCATCGATCCTGATCTTATGGTAGATTCAATGTCAACTAGCAGTTCTTCTCAGCCAAAGAGACCATCTGCATCGTCCCGACCCACAAATGACCAACCTCAGTCACGTAGTGCTGGATCAACTGCCAGAACTTCAGGTACATCAGCAACAAGTCCTCCAACTTCTCTGCTTTGGGATCGACAAACCATTCAGTTTTCTGTAAACGCTTGGGTGTTTCTAGTGGCTGTGCTTGCAATTTTTCCATTGGTGCCTAAAAACCTTTCAAATAGGGCATATCGGCTTTCCTTTATGGGCACGGCATGTTCCTCTCTGTATTCCTTGTACTCGCAACATGGGAAACCGAGGGCTTGGAACTTGCAGGCTTTGCAAGTTTACTTTCAGTCAATAATCATGACTAAGGATTTTATCTACTTGATTTACTGCCTTACCTTTGTGACATCACATCTTTGCCTCAAATTTGCCCTGATTCCCATTCTCTGTCGGGCTCTCGAACATGTTGCCAAGTTCCTTAGGCGCAATTTTAGTCAATCCTCGTTGTACAGGAAGTACTTGGAAGAGCTTTGTGTTTGGGTGGAGTCAAATACAACTACCCTCAACATACTATCTTCACACGCTGAGATTGGACTTGGCTTCCTTCTGATTATATCATTGTTCTCGTGGCAGCGCAACATTATACAGGCATTCATGTACTGGCAGCTATTGAAGCTCATGTATCACGCCCCGGTGACTTCCGACTACCATCTGAGTGTGTGGACAAAAATTGGAAGGACAGTTCATCCCCCCATCCACCGCTATGCCCCATTCTTGGAAACTCCTCTTTCTGCTGTCCATAGATGGTGGTTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0121

Protein Analysis

340

Amino Acids

39.21

Weight (kDa)

9.58

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02420 AT3G02420
fragaria_vesca FvH4_6g45520 FvH4_6g45520
malus_domestica MD09G1082200.v1.1 MD17G1072900.v1.1
prunus_persica Prupe.3G241500_v2.0.a1
pyrus_communis pycom09g00870 pycom17g07380
rosa_chinensis RchiOBHm_Chr2g0163461
rosa_laevigata RLG00000021403
rosa_multiflora Rmu_sc0012243.1_g000002
rosa_roxburghii Rroxscaffold_2G00087300
rosa_samantha Rh2AG569900 Rh2BG582100 Rh2CG551900 Rh2DG591800
rosa_wichuraiana Rw2G047180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 141
AciI CCGC 2 cut(s) 47, 961
AclWI GGATC 3 cut(s) 173, 295, 354
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 2 cut(s) 53, 288
AcyI GRCGYC 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 281
AfaI GTAC 5 cut(s) 310, 494, 710, 719, 860
AfeI AGCGCT 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 90, 976
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 4 cut(s) 151, 201, 435, 874
AhdI GACNNNNNGTC 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 927, 959
AluBI AGCT 4 cut(s) 31, 730, 868, 877
AluI AGCT 4 cut(s) 31, 730, 868, 877
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 3 cut(s) 173, 295, 354
AlwNI CAGNNNCTG 2 cut(s) 31, 50
Aor51HI AGCGCT 1 cut(s) 170
AoxI GGCC 2 cut(s) 81, 120
ApeKI GCWGC 5 cut(s) 44, 50, 129, 832, 865
ApoI RAATTY 1 cut(s) 626
AspLEI GCGC 4 cut(s) 156, 171, 687, 837
AspS9I GGNCC 3 cut(s) 19, 81, 93
AsuC2I CCSGG 1 cut(s) 893
AsuHPI GGTGA 1 cut(s) 907
AvaII GGWCC 2 cut(s) 19, 93
AxyI CCTNAGG 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 658
BauI CACGAG 1 cut(s) 826
BbvI GCAGC 5 cut(s) 37, 56, 141, 844, 877
BccI CCATC 5 cut(s) 72, 244, 918, 962, 999
BceAI ACGGC 1 cut(s) 483
BcgI CGANNNNNNTGC 4 cut(s) 118, 152, 650, 684
BcnI CCSGG 1 cut(s) 893
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 2 cut(s) 210, 389
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 6 cut(s) 45, 48, 51, 130, 833, 866
BlsI GCNGC 6 cut(s) 46, 49, 52, 131, 834, 867
BmcAI AGTACT 1 cut(s) 719
Bme1390I CCNGG 1 cut(s) 893
Bme18I GGWCC 2 cut(s) 19, 93
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 19, 81, 93
BmiI GGNNCC 2 cut(s) 21, 420
BmrFI CCNGG 1 cut(s) 893
BmsI GCATC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 893
Bsa29I ATCGAT 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 512, 891
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 976
Bse1I ACTGG 2 cut(s) 95, 866
Bse21I CCTNAGG 1 cut(s) 680
Bse8I GATNNNNATC 1 cut(s) 183
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 512, 891
BseGI GGATG 4 cut(s) 99, 105, 946, 954
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 90, 976
BseMII CTCAG 4 cut(s) 236, 284, 777, 905
BseNI ACTGG 2 cut(s) 95, 866
BseRI GAGGAG 3 cut(s) 23, 102, 975
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 5 cut(s) 37, 56, 141, 844, 877
BshFI GGCC 2 cut(s) 83, 122
BshNI GGYRCC 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 177
BsiSI CCGG 1 cut(s) 893
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 2 cut(s) 90, 976
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 851
BsnI GGCC 2 cut(s) 83, 122
Bso31I GGTCTC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 467, 658
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 4 cut(s) 178, 184, 287, 346
BspACI CCGC 2 cut(s) 47, 961
BspANI GGCC 2 cut(s) 83, 122
BspCNI CTCAG 4 cut(s) 235, 283, 778, 906
BspDI ATCGAT 1 cut(s) 177
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 21, 420
BspPI GGATC 3 cut(s) 173, 295, 354
BspQI GCTCTTC 1 cut(s) 720
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 226
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 2 cut(s) 95, 866
BssECI CCNNGG 2 cut(s) 512, 891
BssMI GATC 4 cut(s) 178, 184, 287, 346
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 826
Bst2BI CACGAG 1 cut(s) 826
Bst4CI ACNGT 1 cut(s) 943
Bst6I CTCTTC 2 cut(s) 29, 720
BstACI GRCGYC 1 cut(s) 135
BstAPI GCANNNNNTGC 2 cut(s) 50, 535
BstAUI TGTACA 1 cut(s) 708
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 402, 531
BstDEI CTNAG 6 cut(s) 222, 270, 567, 680, 786, 914
BstF5I GGATG 4 cut(s) 99, 105, 946, 954
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 4 cut(s) 156, 171, 687, 837
BstKTI GATC 4 cut(s) 181, 187, 290, 349
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 4 cut(s) 178, 184, 287, 346
BstMWI GCNNNNNNNGC 4 cut(s) 50, 401, 535, 874
BstNSI RCATGY 2 cut(s) 474, 668
BstSCI CCNGG 1 cut(s) 891
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 5 cut(s) 37, 56, 141, 844, 877
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 680
BsuRI GGCC 2 cut(s) 83, 122
BsuTUI ATCGAT 1 cut(s) 177
BtsCI GGATG 4 cut(s) 99, 105, 946, 954
Cac8I GCNNGC 2 cut(s) 402, 531
CaiI CAGNNNCTG 2 cut(s) 31, 50
CciI TCATGA 1 cut(s) 561
CfoI GCGC 4 cut(s) 156, 171, 687, 837
Cfr13I GGNCC 3 cut(s) 19, 81, 93
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 5 cut(s) 309, 493, 709, 718, 859
CviAII CATG 7 cut(s) 118, 471, 503, 562, 665, 856, 880
CviQI GTAC 5 cut(s) 309, 493, 709, 718, 859
DdeI CTNAG 6 cut(s) 222, 270, 567, 680, 786, 914
DpnI GATC 4 cut(s) 180, 186, 289, 348
DpnII GATC 4 cut(s) 178, 184, 287, 346
DraIII CACNNNGTG 1 cut(s) 281
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 29, 720
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 29, 720
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 19, 93
Eco47III AGCGCT 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 53, 288
Eco81I CCTNAGG 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 658
FaeI CATG 7 cut(s) 121, 474, 506, 565, 668, 859, 883
FaqI GGGAC 1 cut(s) 232
FatI CATG 7 cut(s) 117, 470, 502, 561, 664, 855, 879
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 6 cut(s) 45, 48, 51, 130, 833, 866
FokI GGATG 4 cut(s) 86, 92, 933, 941
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 6 cut(s) 45, 48, 51, 130, 833, 866
FspBI CTAG 2 cut(s) 210, 389
GlaI GCGC 4 cut(s) 155, 170, 686, 836
GluI GCNGC 6 cut(s) 45, 48, 51, 130, 833, 866
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 2 cut(s) 83, 122
HapII CCGG 1 cut(s) 893
HhaI GCGC 4 cut(s) 156, 171, 687, 837
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 7 cut(s) 121, 474, 506, 565, 668, 859, 883
Hin6I GCGC 4 cut(s) 154, 169, 685, 835
HinP1I GCGC 4 cut(s) 154, 169, 685, 835
HincII GTYRAC 2 cut(s) 142, 207
HindII GTYRAC 2 cut(s) 142, 207
HinfI GANTC 5 cut(s) 39, 71, 197, 637, 746
HpaII CCGG 1 cut(s) 893
HphI GGTGA 1 cut(s) 907
Hpy166II GTNNAC 5 cut(s) 142, 207, 373, 544, 924
Hpy188I TCNGA 3 cut(s) 810, 904, 915
Hpy188III TCNNGA 5 cut(s) 75, 182, 249, 562, 659
Hpy8I GTNNAC 5 cut(s) 142, 207, 373, 544, 924
Hpy99I CGWCG 3 cut(s) 137, 140, 143
HpyAV CCTTC 2 cut(s) 815, 930
HpyCH4III ACNGT 1 cut(s) 943
HpyCH4IV ACGT 2 cut(s) 135, 277
HpyCH4V TGCA 4 cut(s) 242, 404, 529, 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 401, 535, 874
HpyF3I CTNAG 6 cut(s) 222, 270, 567, 680, 786, 914
HpySE526I ACGT 2 cut(s) 135, 277
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 7 cut(s) 121, 474, 506, 565, 668, 859, 883
HspAI GCGC 4 cut(s) 154, 169, 685, 835
Kzo9I GATC 4 cut(s) 178, 184, 287, 346
LguI GCTCTTC 1 cut(s) 720
Lsp1109I GCAGC 5 cut(s) 37, 56, 141, 844, 877
LweI GCATC 1 cut(s) 251
MaeI CTAG 2 cut(s) 210, 389
MaeII ACGT 2 cut(s) 135, 277
MaeIII GTNAC 3 cut(s) 273, 604, 895
MalI GATC 4 cut(s) 180, 186, 289, 348
MboI GATC 4 cut(s) 178, 184, 287, 346
MboII GAAGA 4 cut(s) 46, 210, 737, 768
MhlI GDGCHC 2 cut(s) 467, 658
MluCI AATT 4 cut(s) 405, 626, 688, 930
MlyI GAGTC 2 cut(s) 65, 755
MmeI TCCRAC 3 cut(s) 120, 353, 927
MseI TTAA 1 cut(s) 1013
MslI CAYNNNNRTG 2 cut(s) 915, 963
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 893
MspR9I CCNGG 1 cut(s) 893
Mva1269I GAATGC 1 cut(s) 851
MwoI GCNNNNNNNGC 4 cut(s) 50, 401, 535, 874
NciI CCSGG 1 cut(s) 893
NdeII GATC 4 cut(s) 178, 184, 287, 346
NlaIII CATG 7 cut(s) 121, 474, 506, 565, 668, 859, 883
NlaIV GGNNCC 2 cut(s) 21, 420
NmuCI GTSAC 3 cut(s) 273, 604, 895
NspI RCATGY 2 cut(s) 474, 668
PagI TCATGA 1 cut(s) 561
PciI ACATGT 1 cut(s) 664
PciSI GCTCTTC 1 cut(s) 720
PctI GAATGC 1 cut(s) 851
PfeI GAWTC 3 cut(s) 39, 197, 637
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 6 cut(s) 46, 49, 52, 131, 834, 867
PleI GAGTC 2 cut(s) 65, 754
PpsI GAGTC 2 cut(s) 65, 754
Ppu21I YACGTR 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 19
PscI ACATGT 1 cut(s) 664
Psp5II RGGWCCY 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 21, 420
PspPI GGNCC 3 cut(s) 19, 81, 93
PspPPI RGGWCCY 1 cut(s) 19
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
PstNI CAGNNNCTG 2 cut(s) 31, 50
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 5 cut(s) 310, 494, 710, 719, 860
RsaNI GTAC 5 cut(s) 309, 493, 709, 718, 859
RseI CAYNNNNRTG 2 cut(s) 915, 963
SalI GTCGAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 1 cut(s) 1013
SatI GCNGC 6 cut(s) 45, 48, 51, 130, 833, 866
Sau3AI GATC 4 cut(s) 178, 184, 287, 346
Sau96I GGNCC 3 cut(s) 19, 81, 93
ScaI AGTACT 1 cut(s) 719
SchI GAGTC 2 cut(s) 65, 755
ScrFI CCNGG 1 cut(s) 893
SduI GDGCHC 2 cut(s) 467, 658
SfaNI GCATC 1 cut(s) 251
SinI GGWCC 2 cut(s) 19, 93
SmiMI CAYNNNNRTG 2 cut(s) 915, 963
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 4 cut(s) 405, 626, 688, 930
SsiI CCGC 2 cut(s) 47, 961
SspMI CTAG 2 cut(s) 210, 389
StyD4I CCNGG 1 cut(s) 891
TaaI ACNGT 1 cut(s) 943
TaiI ACGT 2 cut(s) 138, 280
TaqI TCGA 4 cut(s) 141, 177, 349, 660
TasI AATT 4 cut(s) 405, 626, 688, 930
TatI WGTACW 4 cut(s) 492, 708, 717, 858
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 39, 197, 637
Tru1I TTAA 1 cut(s) 1013
Tru9I TTAA 1 cut(s) 1013
TseFI GTSAC 3 cut(s) 273, 604, 895
TseI GCWGC 5 cut(s) 44, 50, 129, 832, 865
Tsp45I GTSAC 3 cut(s) 273, 604, 895
TspDTI ATGAA 3 cut(s) 163, 844, 935
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 19, 93
XapI RAATTY 1 cut(s) 626
XceI RCATGY 2 cut(s) 474, 668
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 2 cut(s) 210, 389
ZraI GACGTC 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.