Rh2CG551900

Transmembrane protein 33 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013573
Physical Location & Seq
Reverse (-)
73161634 .. 73165304
3671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG551900.1

Sequence Viewer

Length: 666 bp
ATGGGGGAGGAGAGAGACGACCCACAGAAGCTGAAGAAGATAGCGGCGGCGGCTTACGACTACGAGAACGACCCGAGATGGGCCGACTACTGGGCCAACATCCTCATCCCGCCTCACATGGCCTCTAGCCCTGACGTCATCGGCCATTTCAAGCAGAAGTTCTATAAGCGCTATATTGATCCTGAGCTTCTGGTAGATGCAATGTCCGGCAGCAGTCCTCCTCCTCCGCCAAAGAGGCCATCAGCATCGTCCCGGTCTACAAATGACAGTGCAGTCGCCTTGATTCCCATTCTATGTCGGGCTCTCGTACATGTTGCCAAGTTCCTTAGGCGCAACTTTAGTCAATCCTCATTGTACAGGAAATACTTGGAAGAGCCTTGTGTTTGGGTGGAGTCAAACACAACTACCCTCAGCATACTCTCTTCACATGCTGAGATTGGAAATGGCTTTCTTTTGATTATATCTTTGTTCTCGTGGCAGCGCAACATTATACAGACATTCGCATATTGGCAGCTATTGAAGCTCATGTATCATGCTCCGGTGACTTCTGACTACCATCTGAGTGTGTGGACTAAGATAGGGAGGACAGTTCATCCATTCATCCACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATGGTGGTTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0121

Protein Analysis

221

Amino Acids

25.56

Weight (kDa)

9.3

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM33_Pom33 PF03661 91 - 179 9.1e-08 Transmembrane protein 33/Nucleoporin POM33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02420 AT3G02420
fragaria_vesca FvH4_6g45520 FvH4_6g45520
malus_domestica MD09G1082200.v1.1 MD17G1072900.v1.1
prunus_persica Prupe.3G241500_v2.0.a1
pyrus_communis pycom09g00870 pycom17g07380
rosa_chinensis RchiOBHm_Chr2g0163461
rosa_laevigata RLG00000021403
rosa_multiflora Rmu_sc0012243.1_g000002
rosa_roxburghii Rroxscaffold_2G00087300
rosa_samantha Rh2AG569900 Rh2BG582100 Rh2CG551900 Rh2DG591800
rosa_wichuraiana Rw2G047180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AatII GACGTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 257
AciI CCGC 6 cut(s) 44, 47, 50, 110, 227, 607
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 2 cut(s) 309, 356
AfeI AGCGCT 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 79, 90, 622
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 151, 520
AluBI AGCT 4 cut(s) 31, 187, 514, 523
AluI AGCT 4 cut(s) 31, 187, 514, 523
Alw26I GTCTC 2 cut(s) 9, 620
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 73
Aor51HI AGCGCT 1 cut(s) 170
AoxI GGCC 5 cut(s) 81, 93, 120, 142, 236
ApeKI GCWGC 3 cut(s) 210, 478, 511
AspLEI GCGC 3 cut(s) 171, 333, 483
AspS9I GGNCC 2 cut(s) 81, 93
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 326
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 472
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 3 cut(s) 222, 490, 523
BccI CCATC 4 cut(s) 72, 247, 564, 645
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 9, 620
BfaI CTAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 172
BglI GCCNNNNNGGC 1 cut(s) 235
BisI GCNGC 6 cut(s) 45, 48, 51, 211, 479, 512
BlsI GCNGC 6 cut(s) 46, 49, 52, 212, 480, 513
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 81, 93
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 2 cut(s) 187, 254
BmuI ACTGGG 1 cut(s) 100
Bpu10I CCTNAGC 2 cut(s) 183, 410
BpuMI CCSGG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 90, 622
Bse1I ACTGG 1 cut(s) 95
Bse21I CCTNAGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 207
BseGI GGATG 4 cut(s) 99, 105, 592, 600
BseLI CCNNNNNNNGG 3 cut(s) 79, 90, 622
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 4 cut(s) 174, 423, 424, 551
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 3 cut(s) 23, 210, 213
BseXI GCAGC 3 cut(s) 222, 490, 523
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 5 cut(s) 83, 95, 122, 144, 238
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 3 cut(s) 207, 253, 539
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 79, 90, 622
BsmAI GTCTC 2 cut(s) 9, 620
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 5 cut(s) 83, 95, 122, 144, 238
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 6 cut(s) 44, 47, 50, 110, 227, 607
BspANI GGCC 5 cut(s) 83, 95, 122, 144, 238
BspCNI CTCAG 4 cut(s) 175, 423, 424, 552
BspPI GGATC 1 cut(s) 173
BspQI GCTCTTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 95
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 269, 589
Bst6I CTCTTC 2 cut(s) 366, 427
BstACI GRCGYC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 354
BstDEI CTNAG 6 cut(s) 183, 326, 410, 432, 560, 573
BstF5I GGATG 4 cut(s) 99, 105, 592, 600
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 3 cut(s) 171, 333, 483
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 9, 620
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 50, 235, 520
BstNSI RCATGY 2 cut(s) 314, 431
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 3 cut(s) 222, 490, 523
Bsu36I CCTNAGG 1 cut(s) 326
BsuRI GGCC 5 cut(s) 83, 95, 122, 144, 238
BtsCI GGATG 4 cut(s) 99, 105, 592, 600
BtsIMutI CAGTG 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 3 cut(s) 171, 333, 483
Cfr13I GGNCC 2 cut(s) 81, 93
Csp6I GTAC 2 cut(s) 308, 355
CviAII CATG 5 cut(s) 118, 311, 428, 526, 533
CviQI GTAC 2 cut(s) 308, 355
DdeI CTNAG 6 cut(s) 183, 326, 410, 432, 560, 573
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 366, 427
EarI CTCTTC 2 cut(s) 366, 427
EciI GGCGGA 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 304
Eco47III AGCGCT 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 53
Eco81I CCTNAGG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 5 cut(s) 121, 314, 431, 529, 536
FaqI GGGAC 1 cut(s) 235
FatI CATG 5 cut(s) 117, 310, 427, 525, 532
FauI CCCGC 1 cut(s) 117
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 6 cut(s) 45, 48, 51, 211, 479, 512
FokI GGATG 4 cut(s) 86, 92, 579, 587
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 6 cut(s) 45, 48, 51, 211, 479, 512
FspBI CTAG 1 cut(s) 126
GlaI GCGC 3 cut(s) 170, 332, 482
GluI GCNGC 6 cut(s) 45, 48, 51, 211, 479, 512
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 5 cut(s) 83, 95, 122, 144, 238
HapII CCGG 3 cut(s) 207, 253, 539
HhaI GCGC 3 cut(s) 171, 333, 483
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 5 cut(s) 121, 314, 431, 529, 536
Hin6I GCGC 3 cut(s) 169, 331, 481
HinP1I GCGC 3 cut(s) 169, 331, 481
HinfI GANTC 2 cut(s) 283, 392
HpaII CCGG 3 cut(s) 207, 253, 539
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 2 cut(s) 258, 570
Hpy188I TCNGA 2 cut(s) 550, 561
Hpy188III TCNNGA 2 cut(s) 182, 646
Hpy8I GTNNAC 2 cut(s) 258, 570
HpyCH4III ACNGT 2 cut(s) 269, 589
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 200, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 235, 520
HpyF3I CTNAG 6 cut(s) 183, 326, 410, 432, 560, 573
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 5 cut(s) 121, 314, 431, 529, 536
HspAI GCGC 3 cut(s) 169, 331, 481
Kzo9I GATC 1 cut(s) 178
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 9 cut(s) 76, 144, 176, 195, 220, 266, 343, 552, 659
Lsp1109I GCAGC 3 cut(s) 222, 490, 523
LweI GCATC 2 cut(s) 187, 254
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 541
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 4 cut(s) 46, 49, 383, 414
MhlI GDGCHC 1 cut(s) 304
MlyI GAGTC 1 cut(s) 401
MseI TTAA 1 cut(s) 659
MslI CAYNNNNRTG 1 cut(s) 561
MspI CCGG 3 cut(s) 207, 253, 539
MspR9I CCNGG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 50, 235, 520
NciI CCSGG 1 cut(s) 253
NdeII GATC 1 cut(s) 178
NlaIII CATG 5 cut(s) 121, 314, 431, 529, 536
NmuCI GTSAC 1 cut(s) 541
NspI RCATGY 2 cut(s) 314, 431
PciI ACATGT 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 6 cut(s) 46, 49, 52, 212, 480, 513
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PscI ACATGT 1 cut(s) 310
PspPI GGNCC 2 cut(s) 81, 93
PstNI CAGNNNCTG 1 cut(s) 31
RsaI GTAC 2 cut(s) 309, 356
RsaNI GTAC 2 cut(s) 308, 355
RseI CAYNNNNRTG 1 cut(s) 561
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 659
SatI GCNGC 6 cut(s) 45, 48, 51, 211, 479, 512
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 2 cut(s) 81, 93
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 304
SetI ASST 6 cut(s) 33, 138, 189, 516, 525, 665
SfaNI GCATC 2 cut(s) 187, 254
SmiMI CAYNNNNRTG 1 cut(s) 561
SsiI CCGC 6 cut(s) 44, 47, 50, 110, 227, 607
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 269, 589
TaiI ACGT 1 cut(s) 138
TatI WGTACW 1 cut(s) 354
TauI GCSGC 3 cut(s) 47, 50, 53
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 3 cut(s) 210, 478, 511
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 581, 589
TspRI CASTG 1 cut(s) 274
XceI RCATGY 2 cut(s) 314, 431
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.