AT3G02860

preantral ovarian follicle growth

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006843
Physical Location & Seq
Reverse (-)
625163 .. 627491
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02860.2

Sequence Viewer

Length: 939 bp
ATGGATGCTCAAGCGAAGAAGAAGGCCATGTTCCGGTCTAAACTCAACGCCAAGAAGAAAGACACCCGCATAGATTCTCCTCTCGTTAGGTACAACGAATCAGACCAGCCTGTGTGTCGAGTTTGCAATGTCGTCTTGAAATCTGAATCACTCTGGGATGTACATCAAGCTTCTCGTAAGCACCACGAGGCCATTGATAGTCTCAAGGCTAGTGCAGCGGGAGTCCAACGGGGTAGCAAACCTGCTGAAACTCGGCCAACGAAAATTGAAGCTTTGGCTAAATCATCCAATTCTCAGACATCATCTGGTCTTCCGCCAAATTTCTTCGAAAATCGTGAGCCTGCTAGAGAAGTAGAACCAGCAAAATCCAAGAATTTAGAGCAATCAAAGCACACTATAGGATCTGAAACAAATAAGTCAAAGGGACCTCTTCCAGCCGGATTCTTTGATAATCAGAAAACTGATTCTTCAAATACCAAAACCACCAGTGAACCTAAACAGAGTCAGACACAGACCACTGGTCCAGAAACAAAACCAATGGTGAATGGAAACCTTCCAACCGGTTTTTTTGATAATAAAGAAGCTGACCTGCTTGCCCATGGAATCAAGCTCGTCAAACCAGATATCAAGGATGAATATAAAGAATTTGAGAAGTTGATACAAGATGATTTGCAGGTAGTGGATAGCCGCATGGAAGAAGAAGAGGTTGATGCTGCGGAAACTATAGAAGAGGAGGAACAACGAGAGCAAAGATCATACAAAGAGAAAGTAGAGATTCTGAAGAGGAAGAAAATGGAACTTAAAGCGGCAAGATTAGCGAAGCGCAGTAAAACCTCTGAGGGGTCTGTTAAAAAGCCGAAGAAGACAGAAGAAGAATCGCCCAGCGATGAGGAGGATGACGAGGATTCTGCTGTTGATTGGAGAGCTCAACATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000076 GO:0000077 GO:0000278 GO:0001541 GO:0001546 GO:0001701 GO:0001824 GO:0001832 GO:0001894 GO:0003006 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006283 GO:0006289 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007346 GO:0007548 GO:0007586 GO:0008150 GO:0008152 GO:0008156 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010669 GO:0010941 GO:0010948 GO:0010972 GO:0016043 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022600 GO:0022602 GO:0022605 GO:0030154 GO:0030277 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033260 GO:0033314 GO:0033554 GO:0034641 GO:0034645 GO:0040007 GO:0042592 GO:0042698 GO:0042981 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044786 GO:0044818 GO:0045005 GO:0045137 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0046545 GO:0046660 GO:0048162 GO:0048468 GO:0048477 GO:0048478 GO:0048511 GO:0048513 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0048871 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051704 GO:0051716 GO:0051726 GO:0060249 GO:0060255 GO:0060548 GO:0060729 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903047 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04015 ko04020 ko04022 ko04071 ko04261 ko04270 ko04371 ko04540 ko04611 ko04713 ko04720 ko04723 ko04724 ko04725 ko04726 ko04728 ko04730 ko04745 ko04750 ko04911 ko04912 ko04915 ko04916 ko04918 ko04921 ko04922 ko04924 ko04925 ko04927 ko04934 ko04961 ko04970 ko04971 ko04972 ko05010 ko05016 ko05142 ko05143 ko05146 ko05200 map04015 map04020 map04022 map04071 map04261 map04270 map04371 map04540 map04611 map04713 map04720 map04723 map04724 map04725 map04726 map04728 map04730 map04745 map04750 map04911 map04912 map04915 map04916 map04918 map04921 map04922 map04924 map04925 map04927 map04934 map04961 map04970 map04971 map04972 map05010 map05016 map05142 map05143 map05146 map05200
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

312

Amino Acids

35.14

Weight (kDa)

6.39

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 38 - 61 6.9e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 250, 597, 664
AciI CCGC 6 cut(s) 67, 218, 314, 688, 716, 806
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 254
AcsI RAATTY 3 cut(s) 319, 373, 644
AcuI CTGAAG 1 cut(s) 800
AfaI GTAC 2 cut(s) 92, 162
AfiI CCNNNNNNNGG 2 cut(s) 33, 840
AgeI ACCGGT 1 cut(s) 560
AgsI TTSAA 3 cut(s) 139, 269, 471
AhdI GACNNNNNGTC 1 cut(s) 519
AluBI AGCT 5 cut(s) 170, 272, 584, 610, 926
AluI AGCT 5 cut(s) 170, 272, 584, 610, 926
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 409
AoxI GGCC 3 cut(s) 24, 189, 254
ApeKI GCWGC 2 cut(s) 215, 713
ApoI RAATTY 3 cut(s) 319, 373, 644
AsiGI ACCGGT 1 cut(s) 560
AspLEI GCGC 1 cut(s) 825
AspS9I GGNCC 2 cut(s) 425, 521
AsuHPI GGTGA 1 cut(s) 553
AsuII TTCGAA 1 cut(s) 327
AvaII GGWCC 2 cut(s) 425, 521
BanII GRGCYC 1 cut(s) 928
BauI CACGAG 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 302, 869
Bbv12I GWGCWC 1 cut(s) 928
BbvI GCAGC 2 cut(s) 227, 700
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 210, 345
BfmI CTRYAG 2 cut(s) 396, 723
BfuAI ACCTGC 3 cut(s) 250, 597, 664
BisI GCNGC 4 cut(s) 216, 688, 714, 807
BlsI GCNGC 4 cut(s) 217, 689, 715, 808
Bme18I GGWCC 2 cut(s) 425, 521
BmeRI GACNNNNNGTC 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 425, 521
BmiI GGNNCC 1 cut(s) 426
BmsI GCATC 1 cut(s) 700
BpiI GAAGAC 2 cut(s) 302, 869
Bpu14I TTCGAA 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 2 cut(s) 33, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 840
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 2 cut(s) 486, 523
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 5 cut(s) 10, 163, 284, 637, 901
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 33, 840
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 308, 828
BseNI ACTGG 2 cut(s) 486, 523
BseRI GAGGAG 3 cut(s) 69, 746, 905
BseXI GCAGC 2 cut(s) 227, 700
BseYI CCCAGC 1 cut(s) 881
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 3 cut(s) 26, 191, 256
BshTI ACCGGT 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 928
BsiSI CCGG 3 cut(s) 34, 438, 561
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 33, 840
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 3 cut(s) 26, 191, 256
Bsp119I TTCGAA 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 928
Bsp1407I TGTACA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 401, 752
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 6 cut(s) 67, 218, 314, 688, 716, 806
BspANI GGCC 3 cut(s) 26, 191, 256
BspCNI CTCAG 2 cut(s) 307, 829
BspLI GGNNCC 1 cut(s) 426
BspMI ACCTGC 3 cut(s) 250, 597, 664
BspPI GGATC 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 160
BsrI ACTGG 2 cut(s) 486, 523
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 2 cut(s) 401, 752
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 185
Bst6I CTCTTC 4 cut(s) 435, 696, 723, 776
BstAUI TGTACA 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 342, 594
BstDEI CTNAG 2 cut(s) 294, 837
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 5 cut(s) 10, 163, 284, 637, 901
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 2 cut(s) 404, 755
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 401, 752
BstMWI GCNNNNNNNGC 3 cut(s) 215, 388, 815
BstSFI CTRYAG 2 cut(s) 396, 723
BstV1I GCAGC 2 cut(s) 227, 700
BstV2I GAAGAC 2 cut(s) 302, 869
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BsuRI GGCC 3 cut(s) 26, 191, 256
BtgI CCRYGG 1 cut(s) 598
BtgZI GCGATG 1 cut(s) 900
BtsCI GGATG 5 cut(s) 10, 163, 284, 637, 901
BtsIMutI CAGTG 2 cut(s) 493, 516
BveI ACCTGC 3 cut(s) 250, 597, 664
Cac8I GCNNGC 2 cut(s) 342, 594
CfoI GCGC 1 cut(s) 825
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 425, 521
Csp6I GTAC 2 cut(s) 91, 161
CspAI ACCGGT 1 cut(s) 560
CviAII CATG 3 cut(s) 28, 599, 691
CviQI GTAC 2 cut(s) 91, 161
DdeI CTNAG 2 cut(s) 294, 837
DpnI GATC 2 cut(s) 403, 754
DpnII GATC 2 cut(s) 401, 752
DriI GACNNNNNGTC 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 254
Eam1104I CTCTTC 4 cut(s) 435, 696, 723, 776
Eam1105I GACNNNNNGTC 1 cut(s) 519
EarI CTCTTC 4 cut(s) 435, 696, 723, 776
EciI GGCGGA 1 cut(s) 303
Ecl136II GAGCTC 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 928
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 425, 521
Eco53kI GAGCTC 1 cut(s) 926
Eco57I CTGAAG 1 cut(s) 800
EcoICRI GAGCTC 1 cut(s) 926
EcoO109I RGGNCCY 1 cut(s) 425
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 3 cut(s) 31, 602, 694
FaiI YATR 8 cut(s) 29, 71, 398, 600, 639, 692, 725, 757
FaqI GGGAC 1 cut(s) 438
FatI CATG 3 cut(s) 27, 598, 690
FauI CCCGC 2 cut(s) 74, 211
Fnu4HI GCNGC 4 cut(s) 216, 688, 714, 807
FokI GGATG 5 cut(s) 17, 170, 271, 644, 908
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 4 cut(s) 216, 688, 714, 807
FspBI CTAG 2 cut(s) 210, 345
GlaI GCGC 1 cut(s) 824
GluI GCNGC 4 cut(s) 216, 688, 714, 807
GsaI CCCAGC 1 cut(s) 885
HaeIII GGCC 3 cut(s) 26, 191, 256
HapII CCGG 3 cut(s) 34, 438, 561
HhaI GCGC 1 cut(s) 825
Hin1II CATG 3 cut(s) 31, 602, 694
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HindIII AAGCTT 2 cut(s) 168, 270
HpaII CCGG 3 cut(s) 34, 438, 561
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 8 cut(s) 103, 145, 297, 406, 456, 507, 780, 838
Hpy188III TCNNGA 3 cut(s) 136, 335, 524
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 2 cut(s) 16, 563
HpyCH4V TGCA 3 cut(s) 126, 215, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 388, 815
HpyF3I CTNAG 2 cut(s) 294, 837
Hsp92II CATG 3 cut(s) 31, 602, 694
HspAI GCGC 1 cut(s) 823
Kzo9I GATC 2 cut(s) 401, 752
Lsp1109I GCAGC 2 cut(s) 227, 700
LweI GCATC 1 cut(s) 700
MaeI CTAG 2 cut(s) 210, 345
MalI GATC 2 cut(s) 403, 754
MboI GATC 2 cut(s) 401, 752
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 928
MluCI AATT 5 cut(s) 264, 289, 319, 373, 644
MlyI GAGTC 2 cut(s) 231, 511
MmeI TCCRAC 2 cut(s) 250, 581
MseI TTAA 2 cut(s) 801, 849
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 3 cut(s) 34, 438, 561
MwoI GCNNNNNNNGC 3 cut(s) 215, 388, 815
NcoI CCATGG 1 cut(s) 598
NdeII GATC 2 cut(s) 401, 752
NlaIII CATG 3 cut(s) 31, 602, 694
NlaIV GGNNCC 1 cut(s) 426
NmeAIII GCCGAG 1 cut(s) 232
NspV TTCGAA 1 cut(s) 327
PfeI GAWTC 9 cut(s) 74, 98, 146, 441, 464, 603, 775, 875, 905
PinAI ACCGGT 1 cut(s) 560
PkrI GCNGC 4 cut(s) 217, 689, 715, 808
PleI GAGTC 2 cut(s) 230, 510
PpsI GAGTC 2 cut(s) 230, 510
PpuMI RGGWCCY 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 928
Psp5II RGGWCCY 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 881
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 2 cut(s) 425, 521
PspPPI RGGWCCY 1 cut(s) 425
PsuI RGATCY 1 cut(s) 401
RsaI GTAC 2 cut(s) 92, 162
RsaNI GTAC 2 cut(s) 91, 161
SacI GAGCTC 1 cut(s) 928
SaqAI TTAA 2 cut(s) 801, 849
SatI GCNGC 4 cut(s) 216, 688, 714, 807
Sau3AI GATC 2 cut(s) 401, 752
Sau96I GGNCC 2 cut(s) 425, 521
SchI GAGTC 2 cut(s) 231, 511
SduI GDGCHC 1 cut(s) 928
SfaNI GCATC 1 cut(s) 700
SfcI CTRYAG 2 cut(s) 396, 723
SfuI TTCGAA 1 cut(s) 327
SinI GGWCC 2 cut(s) 425, 521
SmlI CTYRAG 2 cut(s) 9, 203
SmoI CTYRAG 2 cut(s) 9, 203
Sse9I AATT 5 cut(s) 264, 289, 319, 373, 644
SsiI CCGC 6 cut(s) 67, 218, 314, 688, 716, 806
SspMI CTAG 2 cut(s) 210, 345
SstI GAGCTC 1 cut(s) 928
StyI CCWWGG 1 cut(s) 598
TaqI TCGA 2 cut(s) 118, 327
TasI AATT 5 cut(s) 264, 289, 319, 373, 644
TatI WGTACW 1 cut(s) 160
TauI GCSGC 2 cut(s) 690, 809
TfiI GAWTC 9 cut(s) 74, 98, 146, 441, 464, 603, 775, 875, 905
Tru1I TTAA 2 cut(s) 801, 849
Tru9I TTAA 2 cut(s) 801, 849
TscAI CASTG 2 cut(s) 493, 523
TseI GCWGC 2 cut(s) 215, 713
TspDTI ATGAA 1 cut(s) 648
TspRI CASTG 2 cut(s) 493, 523
VpaK11BI GGWCC 2 cut(s) 425, 521
XapI RAATTY 3 cut(s) 319, 373, 644
XspI CTAG 2 cut(s) 210, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.