FvH4_1g30030

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006843
Physical Location & Seq
Forward (+)
23784561 .. 23789027
4467 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30030.t1

Sequence Viewer

Length: 759 bp
ATGGATGCCAAAGCCAAGAACAAGGCGCTGTTTCGTGCCAAATTGAACGCCCAGAAGAAGGAAAAGCGCATCAACTCTCCTCTTGTACGGTACAATGATTCTGACCAGCCTTTATGCAAGATTTGTGACTGTGTTTTGAGATCTGAATCTGTTTGGGACGCACATCAACTCTCTCGTAAACATAAAGAGGCAATAATTAATCTCAGAGCTGCAGCAGGCGGATCAAATCGAGTAAATATTGCAACCACTGAAGCCCATCCAGAATTGTTTAAACCTAATGATGTATCTTTGGAGCTGGAGGACCCTAAACCCGAGTTGCTTAGACCTCAAATGTCTTCTGGTCTTCCTCCGGGTTTTTTCGATAACCAGCCACAAAAGCAAAGTACAGGTTCGGACTCTTACTCATCAGTGGAGACTGATTCATACAAAAGGATGCAGAACAGAAGTATTGAGCCTTCTGGGGACTTTACACAGGCAGCATCACAGAGTGCCAGTTCACAAGCTAAGCAAACAAAAGGAGCTCTTCCTGAAGGCTTCTTTGATAACAAGGAAGCTGACTTATCTGCACGGGGAATCAAGATTGTTAAGCCAGATGTCAAAGATGAGTACAAAGAATTTGAGAAGTTGATCCAAGAGGACTTGAAGGAGGTTGACAATCGTTTAGAAGAAGAGGAGATTGATGCTGCTGAAATGATAGAAGAAGCTGAATCAGTGGAGCAAAATTCTCCATTTTGTTCAGAACATATAGGGAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

253

Amino Acids

28.27

Weight (kDa)

5.26

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 39 - 61 8.2e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AclWI GGATC 2 cut(s) 229, 622
AcsI RAATTY 2 cut(s) 614, 721
AcuI CTGAAG 2 cut(s) 270, 549
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 4 cut(s) 87, 92, 385, 608
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 46, 643
AluBI AGCT 6 cut(s) 209, 295, 503, 521, 554, 704
AluI AGCT 6 cut(s) 209, 295, 503, 521, 554, 704
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 2 cut(s) 229, 622
Ama87I CYCGRG 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 209, 212, 476, 683
ApoI RAATTY 2 cut(s) 614, 721
AseI ATTAAT 1 cut(s) 198
AspLEI GCGC 2 cut(s) 28, 69
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 351
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 523
BarI GAAGNNNNNNTAC 2 cut(s) 439, 471
BbsI GAAGAC 2 cut(s) 327, 335
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 4 cut(s) 196, 224, 488, 670
BccI CCATC 1 cut(s) 264
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 29
BglII AGATCT 1 cut(s) 140
BisI GCNGC 4 cut(s) 210, 213, 477, 684
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 4 cut(s) 211, 214, 478, 685
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 4 cut(s) 78, 423, 488, 670
BpiI GAAGAC 2 cut(s) 327, 335
BpmI CTGGAG 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 145
BseGI GGATG 3 cut(s) 10, 256, 438
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 492
BseRI GAGGAG 2 cut(s) 69, 686
BseXI GCAGC 4 cut(s) 196, 224, 488, 670
BsgI GTGCAG 1 cut(s) 549
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 2 cut(s) 170, 476
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 407
BsmFI GGGAC 2 cut(s) 170, 476
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 3 cut(s) 140, 221, 627
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 2 cut(s) 229, 622
BspQI GCTCTTC 1 cut(s) 528
BsrI ACTGG 1 cut(s) 492
BssMI GATC 3 cut(s) 140, 221, 627
Bst4CI ACNGT 2 cut(s) 90, 131
Bst6I CTCTTC 2 cut(s) 528, 663
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 3 cut(s) 203, 320, 504
BstF5I GGATG 3 cut(s) 10, 256, 438
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 69
BstKTI GATC 3 cut(s) 143, 224, 630
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 3 cut(s) 140, 221, 627
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 4 cut(s) 196, 224, 488, 670
BstV2I GAAGAC 2 cut(s) 327, 335
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BtsCI GGATG 3 cut(s) 10, 256, 438
BtsIMutI CAGTG 3 cut(s) 246, 414, 717
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 2 cut(s) 28, 69
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 1 cut(s) 167
Csp6I GTAC 4 cut(s) 86, 91, 384, 607
CviQI GTAC 4 cut(s) 86, 91, 384, 607
DdeI CTNAG 3 cut(s) 203, 320, 504
DpnI GATC 3 cut(s) 142, 223, 629
DpnII GATC 3 cut(s) 140, 221, 627
DraI TTTAAA 1 cut(s) 271
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 2 cut(s) 528, 663
EarI CTCTTC 2 cut(s) 528, 663
EciI GGCGGA 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 2 cut(s) 270, 549
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 523
FaiI YATR 5 cut(s) 115, 183, 424, 744, 746
FalI AAGNNNNNCTT 2 cut(s) 507, 539
FaqI GGGAC 2 cut(s) 170, 476
Fnu4HI GCNGC 4 cut(s) 210, 213, 477, 684
FokI GGATG 3 cut(s) 17, 243, 445
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 4 cut(s) 210, 213, 477, 684
GlaI GCGC 2 cut(s) 27, 68
GluI GCNGC 4 cut(s) 210, 213, 477, 684
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 29
HapII CCGG 1 cut(s) 350
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 28, 69
Hin6I GCGC 2 cut(s) 26, 67
HinP1I GCGC 2 cut(s) 26, 67
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 6 cut(s) 98, 146, 395, 419, 573, 707
HpaII CCGG 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 179, 497, 652
Hpy188I TCNGA 5 cut(s) 103, 145, 206, 394, 739
Hpy188III TCNNGA 3 cut(s) 260, 527, 577
Hpy8I GTNNAC 3 cut(s) 179, 497, 652
HpyAV CCTTC 4 cut(s) 52, 465, 524, 637
HpyCH4III ACNGT 2 cut(s) 90, 131
HpyCH4V TGCA 5 cut(s) 117, 212, 242, 436, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 3 cut(s) 203, 320, 504
HspAI GCGC 2 cut(s) 26, 67
Kzo9I GATC 3 cut(s) 140, 221, 627
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 3 cut(s) 292, 518, 715
Lsp1109I GCAGC 4 cut(s) 196, 224, 488, 670
LweI GCATC 4 cut(s) 78, 423, 488, 670
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 142, 223, 629
MboI GATC 3 cut(s) 140, 221, 627
MboII GAAGA 7 cut(s) 67, 327, 335, 515, 677, 680, 710
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 5 cut(s) 41, 195, 263, 614, 721
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 8 cut(s) 90, 181, 292, 336, 357, 628, 640, 664
MseI TTAA 3 cut(s) 198, 270, 585
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 351
MssI GTTTAAAC 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 376
NciI CCSGG 1 cut(s) 351
NdeII GATC 3 cut(s) 140, 221, 627
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 528
PfeI GAWTC 5 cut(s) 98, 146, 419, 573, 707
PkrI GCNGC 4 cut(s) 211, 214, 478, 685
PleI GAGTC 1 cut(s) 389
PmeI GTTTAAAC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 389
PpuMI RGGWCCY 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 301
PspPPI RGGWCCY 1 cut(s) 301
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 4 cut(s) 87, 92, 385, 608
RsaNI GTAC 4 cut(s) 86, 91, 384, 607
SacI GAGCTC 1 cut(s) 523
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 198, 270, 585
SatI GCNGC 4 cut(s) 210, 213, 477, 684
Sau3AI GATC 3 cut(s) 140, 221, 627
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 4 cut(s) 78, 423, 488, 670
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 301
Sse9I AATT 5 cut(s) 41, 195, 263, 614, 721
SsiI CCGC 1 cut(s) 219
SspI AATATT 1 cut(s) 238
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 90, 131
TaqI TCGA 2 cut(s) 229, 360
TasI AATT 5 cut(s) 41, 195, 263, 614, 721
TatI WGTACW 2 cut(s) 383, 606
TfiI GAWTC 5 cut(s) 98, 146, 419, 573, 707
Tru1I TTAA 3 cut(s) 198, 270, 585
Tru9I TTAA 3 cut(s) 198, 270, 585
TscAI CASTG 3 cut(s) 253, 414, 717
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 4 cut(s) 209, 212, 476, 683
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 3 cut(s) 253, 414, 717
VpaK11BI GGWCC 1 cut(s) 301
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 2 cut(s) 614, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.