pycom07g02980

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
2471974 .. 2472938
965 bp
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UTR
Exon/CDS
Intron
pycom07g02980.1

Sequence Viewer

Length: 390 bp
ATGCTCGCCCTATCGAGAGTAAGAGTTCCATTCCGTTTCCAAGAGAAAGGAAGGTCCAAATCTCATCTCAATCATCTCGTCTACAACAGCAAAGATGAGTACAGAGAATTTGAGAAGTTGATACAAGAGGACTTGAAGGAGGTCAATAATCGTATGGAAGAAGAGCAGATTGATGCTGCTGAGACAATAAAAGAGGCTGAATCAGTGGACCAAAGGGCATATAGCGAGAAAGTGGAATTGTTGAAAAAGAAGAAACTGGAACTGAAGGGTGCTGCCAAGCGTAGAAGAGTTTCTGAGGTTTTAAAAAAGGAGGCTAGTCACAATGAGTCATCGAGTGATAGTGAGACGGATGAGAATTTTGCAGTGGATTGGAGTGCTCAACATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

15.14

Weight (kDa)

6.13

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AcsI RAATTY 2 cut(s) 107, 355
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 2 cut(s) 136, 244
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 176, 338
ApeKI GCWGC 2 cut(s) 176, 272
ApoI RAATTY 2 cut(s) 107, 355
Asp700I GAANNNNTTC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 54, 208
AvaII GGWCC 2 cut(s) 54, 208
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 163, 259
BcoDI GTCTC 2 cut(s) 176, 338
BfaI CTAG 1 cut(s) 315
BisI GCNGC 2 cut(s) 177, 273
BlsI GCNGC 2 cut(s) 178, 274
Bme18I GGWCC 2 cut(s) 54, 208
BmgT120I GGNCC 2 cut(s) 54, 208
BmsI GCATC 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 171, 285
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 163, 259
BsiHKAI GWGCWC 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 176, 338
BsmBI CGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 172, 286
BspQI GCTCTTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 156, 280
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 180, 294
BstF5I GGATG 1 cut(s) 355
BstMAI GTCTC 2 cut(s) 176, 338
BstV1I GCAGC 2 cut(s) 163, 259
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 210, 369
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 54, 208
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 2 cut(s) 197, 314
CviKI_1 RGCY 2 cut(s) 197, 314
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 180, 294
DraI TTTAAA 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 156, 280
EarI CTCTTC 2 cut(s) 156, 280
Eco47I GGWCC 2 cut(s) 54, 208
Eco57I CTGAAG 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 338
FaiI YATR 3 cut(s) 155, 220, 222
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 177, 273
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 2 cut(s) 177, 273
FspBI CTAG 1 cut(s) 315
GluI GCNGC 2 cut(s) 177, 273
HinfI GANTC 2 cut(s) 200, 326
Hpy166II GTNNAC 2 cut(s) 82, 208
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 2 cut(s) 82, 208
HpyAV CCTTC 3 cut(s) 45, 130, 259
HpyCH4V TGCA 1 cut(s) 362
HpyF3I CTNAG 2 cut(s) 180, 294
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 1 cut(s) 242
Lsp1109I GCAGC 2 cut(s) 163, 259
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 317
MboII GAAGA 4 cut(s) 170, 173, 262, 297
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 3 cut(s) 107, 236, 355
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 5 cut(s) 121, 133, 187, 289, 304
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 178, 274
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PspPI GGNCC 2 cut(s) 54, 208
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 2 cut(s) 177, 273
Sau96I GGNCC 2 cut(s) 54, 208
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 379
SetI ASST 3 cut(s) 56, 144, 300
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 2 cut(s) 54, 208
Sse9I AATT 3 cut(s) 107, 236, 355
SspMI CTAG 1 cut(s) 315
TaqI TCGA 2 cut(s) 14, 332
TasI AATT 3 cut(s) 107, 236, 355
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 210, 369
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 176, 272
Tsp45I GTSAC 1 cut(s) 317
TspGWI ACGGA 2 cut(s) 23, 362
TspRI CASTG 2 cut(s) 210, 369
VpaK11BI GGWCC 2 cut(s) 54, 208
XapI RAATTY 2 cut(s) 107, 355
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.