Rorug03G0252400

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006843
Physical Location & Seq
Reverse (-)
23890028 .. 23890867
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0252400.1

Sequence Viewer

Length: 840 bp
ATGCTCTCCCTTCTGAGAGCGTTTCTAGGGTTTCTGGCCGTAGGGTCTCATGGCGGCGCTGCAAACTCGGCTAGTAAGGGCGGGTTTCCCTTTCCTTCTGGTTCCTTTGAAGACGGCGGCGAGGGAGCGATTCATCGATGCCTATTCCTGACTCCCGCAAGGGAGATTTCTCGACTGCGATTGATTTCTGTTGGTGGTAGTCTTGTACCTTGGAAGGGAGGTAGCGCTCTCCTTCCTTCTCCCCTTTTCCGTGGTGGTGACAACGACGGCGGTATAGGTGGTATTGCCAGTGACTCTGCACTGGGTATGTGTTCTGGGAGTACGATCGGTGGTGGAGATCGTGCTTCCTTAGATCTGGATTGTTGGGATTCGGGGAGGGCTGCCGGTGGTGTGTTATACTACGCTGGTTTGGCTTGGGACCGGGTTGCAGGCTGGACGAAGATTGCGAATGCGGGCATCAGTGTCGGGGCCTTTATGCATGGCGATGGTGATCTTTGCCTGGGCTGGGTTCGGTCGATTCCTATGGAGGATAAAGAGATCGGTGGTGATCCCGAGCTTATTTTGGCGACAGAGTTTGGGGTGGCGACTCACGGCGGCAGTGGCGGCAGCTTGCACGGCTGTGATGGATTGCTTGGGGCGCCCTTAGCAATTTCGCCCTACTGGGCCAGCTTGGCCTGGAGCTGGTTGGCGGGTCTGGTGTATGGCCGGATGTGGGTGGGCTGGGCCCTTTCATGGGCTTTGGCTTCCAGCTTTGCTAGGGTTGGGGTTACTTTTGTCTCTTTTGTTTTTTATTTTATGAGGGTAGATGAGGAATTACCCTCATCTACTAGCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

279

Amino Acids

28.79

Weight (kDa)

5.14

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 637
AciI CCGC 9 cut(s) 54, 81, 117, 156, 270, 452, 594, 603, 689
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 2 cut(s) 36, 703
AcyI GRCGYC 1 cut(s) 638
AfaI GTAC 2 cut(s) 207, 322
AfeI AGCGCT 1 cut(s) 226
AfiI CCNNNNNNNGG 6 cut(s) 215, 505, 681, 712, 732, 733
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 2 cut(s) 498, 674
AleI CACNNNNGTG 1 cut(s) 618
AluBI AGCT 5 cut(s) 556, 609, 669, 681, 750
AluI AGCT 5 cut(s) 556, 609, 669, 681, 750
Alw26I GTCTC 2 cut(s) 51, 781
AlwI GGATC 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 551
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 6 cut(s) 36, 468, 663, 672, 703, 723
ApaI GGGCCC 1 cut(s) 727
ApeKI GCWGC 3 cut(s) 59, 380, 606
AspLEI GCGC 3 cut(s) 59, 227, 640
AspS9I GGNCC 5 cut(s) 418, 468, 663, 723, 724
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 269, 500, 557
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 727
BanI GGYRCC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 46, 367, 618
BccI CCATC 2 cut(s) 479, 617
BceAI ACGGC 5 cut(s) 23, 130, 283, 607, 631
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 2 cut(s) 500, 676
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 51, 781
BfaI CTAG 4 cut(s) 26, 72, 756, 828
BfoI RGCGCY 3 cut(s) 60, 228, 641
BglI GCCNNNNNGGC 1 cut(s) 671
BglII AGATCT 1 cut(s) 352
BisI GCNGC 7 cut(s) 55, 60, 118, 381, 595, 604, 607
BlsI GCNGC 7 cut(s) 56, 61, 119, 382, 596, 605, 608
Bme1390I CCNGG 3 cut(s) 422, 500, 676
Bme18I GGWCC 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 5 cut(s) 418, 468, 663, 723, 724
BmiI GGNNCC 5 cut(s) 103, 419, 469, 639, 725
BmrFI CCNGG 3 cut(s) 422, 500, 676
BmrI ACTGGG 2 cut(s) 311, 670
BmsI GCATC 2 cut(s) 128, 465
BmuI ACTGGG 2 cut(s) 311, 670
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 697
Bpu10I CCTNAGC 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 489
BsaHI GRCGYC 1 cut(s) 638
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 209, 250, 499
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 505, 681, 712, 732, 733
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 288, 306, 665
Bse3DI GCAATG 1 cut(s) 838
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 2 cut(s) 500, 676
BseCI ATCGAT 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 209, 250, 499
BseGI GGATG 1 cut(s) 714
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 6 cut(s) 215, 505, 681, 712, 732, 733
BseMI GCAATG 1 cut(s) 838
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 3 cut(s) 288, 306, 665
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 3 cut(s) 46, 367, 618
BseYI CCCAGC 2 cut(s) 504, 720
BsgI GTGCAG 1 cut(s) 282
Bsh1285I CGRYCG 2 cut(s) 327, 515
BshFI GGCC 6 cut(s) 38, 470, 665, 674, 705, 725
BshNI GGYRCC 1 cut(s) 637
BshVI ATCGAT 1 cut(s) 136
BsiEI CGRYCG 2 cut(s) 327, 515
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 3 cut(s) 384, 421, 706
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 6 cut(s) 215, 505, 681, 712, 732, 733
BsmAI GTCTC 2 cut(s) 51, 781
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 6 cut(s) 38, 470, 665, 674, 705, 725
Bso31I GGTCTC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 551
Bsp120I GGGCCC 1 cut(s) 723
Bsp1286I GDGCHC 1 cut(s) 727
Bsp143I GATC 6 cut(s) 324, 337, 352, 490, 537, 547
BspACI CCGC 9 cut(s) 54, 81, 117, 156, 270, 452, 594, 603, 689
BspANI GGCC 6 cut(s) 38, 470, 665, 674, 705, 725
BspCNI CTCAG 1 cut(s) 6
BspDI ATCGAT 1 cut(s) 136
BspLI GGNNCC 5 cut(s) 103, 419, 469, 639, 725
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 838
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 3 cut(s) 288, 306, 665
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 209, 250, 499
BssMI GATC 6 cut(s) 324, 337, 352, 490, 537, 547
BssNI GRCGYC 1 cut(s) 638
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 2 cut(s) 500, 676
BstACI GRCGYC 1 cut(s) 638
BstC8I GCNNGC 4 cut(s) 430, 454, 611, 667
BstDEI CTNAG 3 cut(s) 14, 349, 643
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 714
BstH2I RGCGCY 3 cut(s) 60, 228, 641
BstHHI GCGC 3 cut(s) 59, 227, 640
BstKTI GATC 6 cut(s) 327, 340, 355, 493, 540, 550
BstMAI GTCTC 2 cut(s) 51, 781
BstMBI GATC 6 cut(s) 324, 337, 352, 490, 537, 547
BstMCI CGRYCG 2 cut(s) 327, 515
BstMWI GCNNNNNNNGC 8 cut(s) 68, 410, 600, 603, 615, 637, 644, 671
BstNI CCWGG 2 cut(s) 500, 676
BstSCI CCNGG 3 cut(s) 420, 498, 674
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 3 cut(s) 46, 367, 618
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu15I ATCGAT 1 cut(s) 136
BsuRI GGCC 6 cut(s) 38, 470, 665, 674, 705, 725
BsuTUI ATCGAT 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 714
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 4 cut(s) 295, 299, 466, 604
Cac8I GCNNGC 4 cut(s) 430, 454, 611, 667
CfoI GCGC 3 cut(s) 59, 227, 640
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 5 cut(s) 418, 468, 663, 723, 724
ClaI ATCGAT 1 cut(s) 136
Csp6I GTAC 2 cut(s) 206, 321
CviAII CATG 3 cut(s) 50, 479, 732
CviQI GTAC 2 cut(s) 206, 321
DdeI CTNAG 3 cut(s) 14, 349, 643
DinI GGCGCC 1 cut(s) 639
DpnI GATC 6 cut(s) 326, 339, 354, 492, 539, 549
DpnII GATC 6 cut(s) 324, 337, 352, 490, 537, 547
EaeI YGGCCR 2 cut(s) 36, 703
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 418
Eco47III AGCGCT 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 551
EcoO109I RGGNCCY 2 cut(s) 468, 724
EcoRII CCWGG 2 cut(s) 498, 674
EcoT14I CCWWGG 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 727
EgeI GGCGCC 1 cut(s) 639
EheI GGCGCC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 3 cut(s) 53, 482, 735
FaqI GGGAC 1 cut(s) 431
FatI CATG 3 cut(s) 49, 478, 731
FauI CCCGC 4 cut(s) 74, 163, 445, 682
Fnu4HI GCNGC 7 cut(s) 55, 60, 118, 381, 595, 604, 607
FokI GGATG 1 cut(s) 721
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 7 cut(s) 55, 60, 118, 381, 595, 604, 607
FspBI CTAG 4 cut(s) 26, 72, 756, 828
GlaI GCGC 3 cut(s) 58, 226, 639
GluI GCNGC 7 cut(s) 55, 60, 118, 381, 595, 604, 607
GsaI CCCAGC 2 cut(s) 508, 724
GsuI CTGGAG 1 cut(s) 697
HaeII RGCGCY 3 cut(s) 60, 228, 641
HaeIII GGCC 6 cut(s) 38, 470, 665, 674, 705, 725
HapII CCGG 3 cut(s) 384, 421, 706
HhaI GCGC 3 cut(s) 59, 227, 640
Hin1I GRCGYC 1 cut(s) 638
Hin1II CATG 3 cut(s) 53, 482, 735
Hin6I GCGC 3 cut(s) 57, 225, 638
HinP1I GCGC 3 cut(s) 57, 225, 638
HinfI GANTC 6 cut(s) 130, 151, 293, 368, 517, 586
HpaII CCGG 3 cut(s) 384, 421, 706
HphI GGTGA 3 cut(s) 269, 500, 557
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 4 cut(s) 148, 171, 356, 551
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 5 cut(s) 20, 105, 208, 242, 246
HpyCH4V TGCA 5 cut(s) 62, 299, 428, 478, 613
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 410, 600, 603, 615, 637, 644, 671
HpyF3I CTNAG 3 cut(s) 14, 349, 643
Hsp92I GRCGYC 1 cut(s) 638
Hsp92II CATG 3 cut(s) 53, 482, 735
HspAI GCGC 3 cut(s) 57, 225, 638
KasI GGCGCC 1 cut(s) 637
Kzo9I GATC 6 cut(s) 324, 337, 352, 490, 537, 547
LmnI GCTCC 2 cut(s) 125, 678
Lsp1109I GCAGC 3 cut(s) 46, 367, 618
LweI GCATC 2 cut(s) 128, 465
MaeI CTAG 4 cut(s) 26, 72, 756, 828
MaeIII GTNAC 3 cut(s) 257, 290, 766
MalI GATC 6 cut(s) 326, 339, 354, 492, 539, 549
MboI GATC 6 cut(s) 324, 337, 352, 490, 537, 547
MboII GAAGA 2 cut(s) 122, 451
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 727
MluCI AATT 2 cut(s) 648, 812
Mly113I GGCGCC 1 cut(s) 638
MlyI GAGTC 3 cut(s) 145, 287, 580
MnlI CCTC 7 cut(s) 115, 212, 369, 520, 792, 802, 829
Mph1103I ATGCAT 1 cut(s) 480
MseI TTAA 1 cut(s) 838
MslI CAYNNNNRTG 2 cut(s) 483, 618
MspI CCGG 3 cut(s) 384, 421, 706
MspR9I CCNGG 3 cut(s) 422, 500, 676
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 2 cut(s) 500, 676
MwoI GCNNNNNNNGC 8 cut(s) 68, 410, 600, 603, 615, 637, 644, 671
NarI GGCGCC 1 cut(s) 638
NciI CCSGG 1 cut(s) 422
NdeII GATC 6 cut(s) 324, 337, 352, 490, 537, 547
NlaIII CATG 3 cut(s) 53, 482, 735
NlaIV GGNNCC 5 cut(s) 103, 419, 469, 639, 725
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 2 cut(s) 257, 290
NsiI ATGCAT 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PctI GAATGC 1 cut(s) 454
PfeI GAWTC 3 cut(s) 130, 368, 517
PkrI GCNGC 7 cut(s) 56, 61, 119, 382, 596, 605, 608
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 3 cut(s) 145, 287, 580
PluTI GGCGCC 1 cut(s) 641
PpsI GAGTC 3 cut(s) 145, 287, 580
Psp6I CCWGG 2 cut(s) 498, 674
PspFI CCCAGC 2 cut(s) 504, 720
PspGI CCWGG 2 cut(s) 498, 674
PspN4I GGNNCC 5 cut(s) 103, 419, 469, 639, 725
PspOMI GGGCCC 1 cut(s) 723
PspPI GGNCC 5 cut(s) 418, 468, 663, 723, 724
PsuI RGATCY 1 cut(s) 352
PvuI CGATCG 1 cut(s) 327
RsaI GTAC 2 cut(s) 207, 322
RsaNI GTAC 2 cut(s) 206, 321
RseI CAYNNNNRTG 2 cut(s) 483, 618
SaqAI TTAA 1 cut(s) 838
SatI GCNGC 7 cut(s) 55, 60, 118, 381, 595, 604, 607
Sau3AI GATC 6 cut(s) 324, 337, 352, 490, 537, 547
Sau96I GGNCC 5 cut(s) 418, 468, 663, 723, 724
SchI GAGTC 3 cut(s) 145, 287, 580
ScrFI CCNGG 3 cut(s) 422, 500, 676
SduI GDGCHC 1 cut(s) 727
SetI ASST 8 cut(s) 211, 223, 280, 558, 611, 671, 683, 752
SfaNI GCATC 2 cut(s) 128, 465
SfiI GGCCNNNNNGGCC 1 cut(s) 671
SfoI GGCGCC 1 cut(s) 639
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 2 cut(s) 483, 618
Sse9I AATT 2 cut(s) 648, 812
SsiI CCGC 9 cut(s) 54, 81, 117, 156, 270, 452, 594, 603, 689
SspDI GGCGCC 1 cut(s) 637
SspMI CTAG 4 cut(s) 26, 72, 756, 828
StyD4I CCNGG 3 cut(s) 420, 498, 674
StyI CCWWGG 1 cut(s) 209
TaqI TCGA 3 cut(s) 136, 172, 515
TaqII GACCGA 1 cut(s) 501
TasI AATT 2 cut(s) 648, 812
TauI GCSGC 4 cut(s) 57, 120, 597, 606
TfiI GAWTC 3 cut(s) 130, 368, 517
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TscAI CASTG 4 cut(s) 295, 306, 466, 604
TseFI GTSAC 2 cut(s) 257, 290
TseI GCWGC 3 cut(s) 59, 380, 606
Tsp45I GTSAC 2 cut(s) 257, 290
TspDTI ATGAA 2 cut(s) 122, 720
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 4 cut(s) 295, 306, 466, 604
VpaK11BI GGWCC 1 cut(s) 418
XspI CTAG 4 cut(s) 26, 72, 756, 828
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.