Rh3CG335600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006843
Physical Location & Seq
Reverse (-)
37386662 .. 37391717
5056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG335600.1

Sequence Viewer

Length: 750 bp
ATGGATGCTAAAGCCAAGAACAAGGCGCTGTTTCGTGCCAAATTGAATGCCCAGAAGAAGGAAAAGCGCTTAAACTGTCCCCTTGTACGGTATAATGATTCTGACCAGCCTGTATGCAAGATTTGTGACGTTGTTTTGAAATCTGAATCCGTTTGGGACGCACATCAACTCTCTCGTAAACATAAAGAGGCAATAATTAACCTCAGAGCTACAGCAGGTGGAGTAAACCGAATAAACAGTACAACCACTGAAGCCCGTTCAGAATTGTCTAAACCTAACCATGGGAATTCTTTGGAGTTGGAGGACCCTAAACCTGAGCGCTCACCCGGGTTGCTTAGACCTCAGACGTCTTCTGGGCTTCCTCCGGGTTTTTTTGATAACCAGCCACAAAAGCGAAGTACTGGAACTGACTCTTACACATCAGTGGAGACTGATTCATACAAAAAGATGCAGAACAGAGGTATTGAGCCTTCTGGGGACCTTACACAGGCAATGTCACAGATTGCCAGTCCACAAGCCAAGCAAATGAAGGGAGCTCTTCCTGAAGGCTTCTTTGATAACAAGGAAGCGGATTTATCTGCACGTGGAATAAAGCTTGTCAAGCCAGATGTCAAAGATGAGTACAAAGAATTTGAGAAGTTGATCCAAGAGGACTTGAAGGAGGTTGACAATCGTTTAGAAGAAGAGGAGGTGATGCCTATATATCCTTGGCTGATTCAGATTTTTTCTCTTTTGTTCCTATATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

249

Amino Acids

28.15

Weight (kDa)

7.65

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_jaz PF12171 37 - 62 9.6e-07 Zinc-finger double-stranded RNA-binding
zf-met PF12874 38 - 61 1.8e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
AatII GACGTC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 206
AciI CCGC 1 cut(s) 569
AclWI GGATC 1 cut(s) 637
AcsI RAATTY 2 cut(s) 286, 629
AcuI CTGAAG 2 cut(s) 270, 564
AcvI CACGTG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 4 cut(s) 87, 241, 400, 623
AfeI AGCGCT 2 cut(s) 68, 320
AfiI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
AgsI TTSAA 3 cut(s) 46, 139, 658
AleI CACNNNNGTG 1 cut(s) 422
AluBI AGCT 3 cut(s) 209, 536, 595
AluI AGCT 3 cut(s) 209, 536, 595
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 326
Aor51HI AGCGCT 2 cut(s) 68, 320
ApoI RAATTY 2 cut(s) 286, 629
AspLEI GCGC 3 cut(s) 28, 69, 321
AspS9I GGNCC 2 cut(s) 304, 478
AsuC2I CCSGG 3 cut(s) 327, 328, 366
AsuHPI GGTGA 2 cut(s) 315, 703
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 304, 478
BanII GRGCYC 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 454, 486
BbrPI CACGTG 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 538
BcnI CCSGG 3 cut(s) 327, 328, 366
BcoDI GTCTC 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 3 cut(s) 29, 70, 322
BfuAI ACCTGC 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 3 cut(s) 327, 328, 366
Bme18I GGWCC 2 cut(s) 304, 478
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 304, 478
BmiI GGNNCC 2 cut(s) 306, 479
BmrFI CCNGG 3 cut(s) 327, 328, 366
BmsI GCATC 2 cut(s) 438, 684
BpiI GAAGAC 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 315
BpuMI CCSGG 3 cut(s) 327, 328, 366
BsaAI YACGTR 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 280, 326, 707
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
Bse1I ACTGG 2 cut(s) 406, 507
Bse3DI GCAATG 1 cut(s) 498
BseDI CCNNGG 3 cut(s) 280, 326, 707
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 3 cut(s) 217, 306, 356
BseNI ACTGG 2 cut(s) 406, 507
BseRI GAGGAG 1 cut(s) 701
BsgI GTGCAG 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 2 cut(s) 327, 365
BslFI GGGAC 3 cut(s) 63, 170, 491
BslI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 3 cut(s) 63, 170, 491
BsmI GAATGC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 1 cut(s) 642
Bsp19I CCATGG 1 cut(s) 280
BspACI CCGC 1 cut(s) 569
BspCNI CTCAG 3 cut(s) 216, 307, 355
BspLI GGNNCC 2 cut(s) 306, 479
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 2 cut(s) 406, 507
BssECI CCNNGG 3 cut(s) 280, 326, 707
BssMI GATC 1 cut(s) 642
BssNI GRCGYC 1 cut(s) 347
BssT1I CCWWGG 2 cut(s) 280, 707
Bst4CI ACNGT 3 cut(s) 77, 90, 239
Bst6I CTCTTC 2 cut(s) 543, 678
BstACI GRCGYC 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 584
BstDEI CTNAG 4 cut(s) 203, 315, 335, 342
BstDSI CCRYGG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 3 cut(s) 29, 70, 322
BstHHI GCGC 3 cut(s) 28, 69, 321
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 2 cut(s) 391, 601
BstSCI CCNGG 3 cut(s) 325, 326, 364
BstSFI CTRYAG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 246, 429
BveI ACCTGC 1 cut(s) 206
CfoI GCGC 3 cut(s) 28, 69, 321
Cfr13I GGNCC 2 cut(s) 304, 478
Cfr9I CCCGGG 1 cut(s) 326
CseI GACGC 1 cut(s) 167
Csp6I GTAC 4 cut(s) 86, 240, 399, 622
CviAII CATG 1 cut(s) 281
CviQI GTAC 4 cut(s) 86, 240, 399, 622
DdeI CTNAG 4 cut(s) 203, 315, 335, 342
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 543, 678
EarI CTCTTC 2 cut(s) 543, 678
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 2 cut(s) 280, 707
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 304, 478
Eco47III AGCGCT 2 cut(s) 68, 320
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 270, 564
Eco72I CACGTG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoO109I RGGNCCY 2 cut(s) 304, 478
EcoRI GAATTC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 280, 707
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 280, 707
FaeI CATG 1 cut(s) 284
FaiI YATR 9 cut(s) 93, 115, 183, 282, 439, 701, 703, 742, 748
FaqI GGGAC 3 cut(s) 63, 170, 491
FatI CATG 1 cut(s) 280
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 538
GlaI GCGC 3 cut(s) 27, 68, 320
HaeII RGCGCY 3 cut(s) 29, 70, 322
HapII CCGG 2 cut(s) 327, 365
HgaI GACGC 1 cut(s) 167
HhaI GCGC 3 cut(s) 28, 69, 321
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 3 cut(s) 26, 67, 319
HinP1I GCGC 3 cut(s) 26, 67, 319
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 5 cut(s) 98, 146, 410, 434, 715
HpaII CCGG 2 cut(s) 327, 365
HphI GGTGA 2 cut(s) 315, 703
Hpy166II GTNNAC 4 cut(s) 179, 226, 512, 667
Hpy188I TCNGA 6 cut(s) 103, 145, 206, 262, 345, 720
Hpy188III TCNNGA 1 cut(s) 542
Hpy8I GTNNAC 4 cut(s) 179, 226, 512, 667
HpyAV CCTTC 5 cut(s) 52, 480, 523, 539, 652
HpyCH4III ACNGT 3 cut(s) 77, 90, 239
HpyCH4IV ACGT 3 cut(s) 129, 347, 583
HpyCH4V TGCA 3 cut(s) 117, 451, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 391, 601
HpyF3I CTNAG 4 cut(s) 203, 315, 335, 342
HpySE526I ACGT 3 cut(s) 129, 347, 583
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 3 cut(s) 26, 67, 319
Kzo9I GATC 1 cut(s) 642
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 533
LweI GCATC 2 cut(s) 438, 684
MaeII ACGT 3 cut(s) 129, 347, 583
MaeIII GTNAC 2 cut(s) 125, 495
MalI GATC 1 cut(s) 644
MboI GATC 1 cut(s) 642
MboII GAAGA 5 cut(s) 67, 342, 530, 692, 695
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 5 cut(s) 41, 195, 263, 286, 629
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 279
MseI TTAA 2 cut(s) 71, 198
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 2 cut(s) 327, 365
MspR9I CCNGG 3 cut(s) 327, 328, 366
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 391, 601
NciI CCSGG 3 cut(s) 327, 328, 366
NcoI CCATGG 1 cut(s) 280
NdeII GATC 1 cut(s) 642
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 2 cut(s) 306, 479
NmuCI GTSAC 2 cut(s) 125, 495
OliI CACNNNNGTG 1 cut(s) 422
PaqCI CACCTGC 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 543
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 4 cut(s) 98, 146, 434, 715
PleI GAGTC 1 cut(s) 404
PmaCI CACGTG 1 cut(s) 584
PmlI CACGTG 1 cut(s) 584
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 584
PpuMI RGGWCCY 2 cut(s) 304, 478
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 2 cut(s) 304, 478
PspCI CACGTG 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 306, 479
PspPI GGNCC 2 cut(s) 304, 478
PspPPI RGGWCCY 2 cut(s) 304, 478
RsaI GTAC 4 cut(s) 87, 241, 400, 623
RsaNI GTAC 4 cut(s) 86, 240, 399, 622
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 538
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 71, 198
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 2 cut(s) 304, 478
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 327, 328, 366
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 2 cut(s) 438, 684
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 2 cut(s) 304, 478
SmaI CCCGGG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 5 cut(s) 41, 195, 263, 286, 629
SsiI CCGC 1 cut(s) 569
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 3 cut(s) 325, 326, 364
StyI CCWWGG 2 cut(s) 280, 707
TaaI ACNGT 3 cut(s) 77, 90, 239
TaiI ACGT 3 cut(s) 132, 350, 586
TasI AATT 5 cut(s) 41, 195, 263, 286, 629
TatI WGTACW 3 cut(s) 239, 398, 621
TfiI GAWTC 4 cut(s) 98, 146, 434, 715
Tru1I TTAA 2 cut(s) 71, 198
Tru9I TTAA 2 cut(s) 71, 198
TscAI CASTG 2 cut(s) 253, 429
TseFI GTSAC 2 cut(s) 125, 495
Tsp45I GTSAC 2 cut(s) 125, 495
TspDTI ATGAA 2 cut(s) 426, 542
TspGWI ACGGA 1 cut(s) 139
TspMI CCCGGG 1 cut(s) 326
TspRI CASTG 2 cut(s) 253, 429
VpaK11BI GGWCC 2 cut(s) 304, 478
XagI CCTNNNNNAGG 1 cut(s) 485
XapI RAATTY 2 cut(s) 286, 629
XmaI CCCGGG 1 cut(s) 326
ZraI GACGTC 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.