Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006843

Physical Location & Seq

Genomic Coordinates Reverse (-)

32794226 .. 32799301

Gene Structure 5076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1273300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGATGCGAAAGCCAGGAACAAGGCGTTGTTTCGTGCGAGATTGAATGCCCAGAAGAAGGACAAGCGCATAGACTCTCCTCTCGTACGGTACAATGAATCTGAGCAGCCTGTGTGCAAGGTTTGTGACATTGCTCTGAAATCTGAATCACAATGGGACGGACATCAAGCATCTCGTAAACATCGTGAGGCACTAAGTAATTTCAAAGCTACAGCTGCTGGACTAAACCGAGTCAACAACGGAAAAGCTGAAGCCCGTCCAGAATTGCCAAAACCTAAGCCAGAACATTCTGTGGAGTTGCTTAAACCAGGACCTGAACGCTCTACAGAATTGCCTAGAGAGCAGTCGTCATCTGGGCTTCCTCCAGATTTTTTTGATAACCATGATGCAAAAAAGCAAAATACAGGTAGGGAAAAGGTGCAGACAAGAAATATTGAGCCTGCCAGGGACCTTACACAGACATCATCACAGGTTGCCAGTTCAGAGGCCAAGCAAATAAAGGGAGCTCTTCCTGAAGGCTTCTTTGACAACAAGGAGGCTGATTTATCTGCACGAGGAATAAAGCCTGTTAAGCCAGATGTCAAAGATGAGTACAGAGAATTTGAGAAGTTGATACAAGAGGACTTGAAGGAGGTCGATAATCGTATGGAAGAAGAGGAGATTGATGCTGCTGAGACGATAGAAGAGGCTGAATCAGTGGAGCAAAGGGCATATAGGGAGAAAGTGGAATTGTTGAAAAAGAAGAAAATGGAACTGAAGGCAGCCGGTGCTTCCAAGCGCAGAAGAGTTTCGGATGTCGTAAAAAAGGAGCCTAGTCACGATGAGTCATCAAGTGATAGCGACACGGATGAGAATTTTGCAGTGGATTGGAGAGCACAGCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_jaz zf-met

Protein Analysis

296

Amino Acids

33.47

Weight (kDa)

6.39

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_jaz	PF12171	37 - 62	1.2e-06	Zinc-finger double-stranded RNA-binding
zf-met	PF12874	38 - 61	1.3e-06	Zinc-finger of C2H2 type
ZNF380_CC	PF23406	170 - 250	5e-06	ZNF380 coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02860 AT3G02860
fragaria_vesca	FvH4_1g30030 FvH4_1g30030 FvH4_1g30030 FvH4_1g30030
malus_domestica	MD02G1273300.v1.1 MD07G1042200.v1.1
prunus_persica	Prupe.2G048000_v2.0.a1
pyrus_communis	pycom02g23420 pycom07g02980
rosa_chinensis	RchiOBHm_Chr3g0492111
rosa_laevigata	RLG00000022791
rosa_multiflora	Rmu_sc0003579.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392500
rosa_rugosa	Rorug03G0252100 Rorug03G0252200 Rorug03G0252300 Rorug03G0252400
rosa_samantha	Rh3AG302200 Rh3BG321100 Rh3BG338100 Rh3CG319600 Rh3CG335600 Rh3DG337700
rosa_wichuraiana	Rw3G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	599, 853
AcuI	CTGAAG	3 cut(s)	270, 534, 776
AfaI	GTAC	3 cut(s)	87, 92, 593
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	46, 205, 628, 736
AjnI	CCWGG	3 cut(s)	14, 307, 443
AluBI	AGCT	4 cut(s)	209, 215, 248, 506
AluI	AGCT	4 cut(s)	209, 215, 248, 506
Alw21I	GWGCWC	2 cut(s)	508, 877
Alw26I	GTCTC	1 cut(s)	668
AlwNI	CAGNNNCTG	2 cut(s)	218, 314
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	4 cut(s)	106, 215, 668, 761
ApoI	RAATTY	2 cut(s)	599, 853
Asp700I	GAANNNNTTC	1 cut(s)	787
AspLEI	GCGC	2 cut(s)	69, 780
AspS9I	GGNCC	2 cut(s)	311, 448
AvaII	GGWCC	2 cut(s)	311, 448
BanII	GRGCYC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	508, 877
BbvI	GCAGC	4 cut(s)	118, 202, 655, 773
BciT130I	CCWGG	3 cut(s)	16, 309, 445
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	2 cut(s)	336, 813
BfmI	CTRYAG	2 cut(s)	210, 324
BisI	GCNGC	4 cut(s)	107, 216, 669, 762
BlsI	GCNGC	4 cut(s)	108, 217, 670, 763
Bme1390I	CCNGG	3 cut(s)	16, 309, 445
Bme18I	GGWCC	2 cut(s)	311, 448
BmgT120I	GGNCC	2 cut(s)	311, 448
BmiI	GGNNCC	2 cut(s)	449, 810
BmrFI	CCNGG	3 cut(s)	16, 309, 445
BmsI	GCATC	3 cut(s)	179, 376, 655
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	3 cut(s)	16, 309, 445
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	3 cut(s)	10, 799, 853
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	93, 663
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	2 cut(s)	69, 671
BseXI	GCAGC	4 cut(s)	118, 202, 655, 773
BsgI	GTGCAG	2 cut(s)	440, 534
BshFI	GGCC	1 cut(s)	488
BsiHKAI	GWGCWC	2 cut(s)	508, 877
BsiSI	CCGG	1 cut(s)	765
BsiWI	CGTACG	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	170, 461
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	668
BsmBI	CGTCTC	1 cut(s)	668
BsmFI	GGGAC	2 cut(s)	170, 461
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	508, 877
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	2 cut(s)	94, 664
BspLI	GGNNCC	2 cut(s)	449, 810
BspQI	GCTCTTC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	477
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	3 cut(s)	16, 309, 445
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	4 cut(s)	513, 648, 678, 778
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	4 cut(s)	102, 194, 276, 672
BstF5I	GGATG	3 cut(s)	10, 799, 853
BstHHI	GCGC	2 cut(s)	69, 780
BstMAI	GTCTC	1 cut(s)	668
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 340, 571, 767
BstNI	CCWGG	3 cut(s)	16, 309, 445
BstSCI	CCNGG	3 cut(s)	14, 307, 443
BstSFI	CTRYAG	2 cut(s)	210, 324
BstV1I	GCAGC	4 cut(s)	118, 202, 655, 773
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	10, 799, 853
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	2 cut(s)	702, 867
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	2 cut(s)	218, 314
CfoI	GCGC	2 cut(s)	69, 780
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	2 cut(s)	311, 448
Csp6I	GTAC	3 cut(s)	86, 91, 592
CviAII	CATG	1 cut(s)	383
CviQI	GTAC	3 cut(s)	86, 91, 592
DdeI	CTNAG	4 cut(s)	102, 194, 276, 672
Eam1104I	CTCTTC	4 cut(s)	513, 648, 678, 778
EarI	CTCTTC	4 cut(s)	513, 648, 678, 778
Ecl136II	GAGCTC	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	311, 448
Eco53kI	GAGCTC	1 cut(s)	506
Eco57I	CTGAAG	3 cut(s)	270, 534, 776
EcoICRI	GAGCTC	1 cut(s)	506
EcoO109I	RGGNCCY	2 cut(s)	311, 448
EcoRII	CCWGG	3 cut(s)	14, 307, 443
EcoT38I	GRGCYC	1 cut(s)	508
Esp3I	CGTCTC	1 cut(s)	668
FaeI	CATG	1 cut(s)	386
FaiI	YATR	5 cut(s)	71, 384, 647, 712, 714
FaqI	GGGAC	2 cut(s)	170, 461
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	4 cut(s)	107, 216, 669, 762
FokI	GGATG	3 cut(s)	17, 806, 860
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	4 cut(s)	107, 216, 669, 762
FspBI	CTAG	2 cut(s)	336, 813
GlaI	GCGC	2 cut(s)	68, 779
GluI	GCNGC	4 cut(s)	107, 216, 669, 762
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	1 cut(s)	765
HhaI	GCGC	2 cut(s)	69, 780
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	2 cut(s)	67, 778
HinP1I	GCGC	2 cut(s)	67, 778
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	6 cut(s)	74, 98, 146, 231, 692, 824
HpaII	CCGG	1 cut(s)	765
Hpy166II	GTNNAC	2 cut(s)	179, 235
Hpy188I	TCNGA	5 cut(s)	103, 138, 145, 484, 793
Hpy188III	TCNNGA	5 cut(s)	185, 260, 365, 512, 818
Hpy8I	GTNNAC	2 cut(s)	179, 235
HpyAV	CCTTC	4 cut(s)	52, 509, 622, 751
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	5 cut(s)	117, 389, 421, 551, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 340, 571, 767
HpyF3I	CTNAG	4 cut(s)	102, 194, 276, 672
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	2 cut(s)	67, 778
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	3 cut(s)	503, 700, 808
Lsp1109I	GCAGC	4 cut(s)	118, 202, 655, 773
LweI	GCATC	3 cut(s)	179, 376, 655
MaeI	CTAG	2 cut(s)	336, 813
MaeIII	GTNAC	2 cut(s)	125, 815
MboII	GAAGA	7 cut(s)	67, 500, 662, 665, 695, 754, 795
MhlI	GDGCHC	2 cut(s)	508, 877
MluCI	AATT	6 cut(s)	199, 263, 329, 599, 728, 853
MlyI	GAGTC	3 cut(s)	68, 240, 833
MroXI	GAANNNNTTC	1 cut(s)	787
MseI	TTAA	2 cut(s)	303, 570
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	3 cut(s)	16, 309, 445
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	3 cut(s)	16, 309, 445
MwoI	GCNNNNNNNGC	4 cut(s)	215, 340, 571, 767
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	2 cut(s)	449, 810
NmuCI	GTSAC	2 cut(s)	125, 815
PciSI	GCTCTTC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	787
PfeI	GAWTC	3 cut(s)	98, 146, 692
Pfl23II	CGTACG	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	108, 217, 670, 763
PleI	GAGTC	3 cut(s)	68, 239, 832
PpsI	GAGTC	3 cut(s)	68, 239, 832
PpuMI	RGGWCCY	2 cut(s)	311, 448
Psp124BI	GAGCTC	1 cut(s)	508
Psp5II	RGGWCCY	2 cut(s)	311, 448
Psp6I	CCWGG	3 cut(s)	14, 307, 443
PspGI	CCWGG	3 cut(s)	14, 307, 443
PspLI	CGTACG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	449, 810
PspPI	GGNCC	2 cut(s)	311, 448
PspPPI	RGGWCCY	2 cut(s)	311, 448
PstNI	CAGNNNCTG	2 cut(s)	218, 314
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	87, 92, 593
RsaNI	GTAC	3 cut(s)	86, 91, 592
SacI	GAGCTC	1 cut(s)	508
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	303, 570
SatI	GCNGC	4 cut(s)	107, 216, 669, 762
Sau96I	GGNCC	2 cut(s)	311, 448
SchI	GAGTC	3 cut(s)	68, 240, 833
ScrFI	CCNGG	3 cut(s)	16, 309, 445
SduI	GDGCHC	2 cut(s)	508, 877
SfaNI	GCATC	3 cut(s)	179, 376, 655
SfcI	CTRYAG	2 cut(s)	210, 324
SinI	GGWCC	2 cut(s)	311, 448
Sse9I	AATT	6 cut(s)	199, 263, 329, 599, 728, 853
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	336, 813
SstI	GAGCTC	1 cut(s)	508
StyD4I	CCNGG	3 cut(s)	14, 307, 443
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	636
TasI	AATT	6 cut(s)	199, 263, 329, 599, 728, 853
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	3 cut(s)	98, 146, 692
Tru1I	TTAA	2 cut(s)	303, 570
Tru9I	TTAA	2 cut(s)	303, 570
TscAI	CASTG	2 cut(s)	702, 867
TseFI	GTSAC	2 cut(s)	125, 815
TseI	GCWGC	4 cut(s)	106, 215, 668, 761
Tsp45I	GTSAC	2 cut(s)	125, 815
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	3 cut(s)	174, 255, 860
TspRI	CASTG	2 cut(s)	702, 867
VpaK11BI	GGWCC	2 cut(s)	311, 448
XapI	RAATTY	2 cut(s)	599, 853
XmnI	GAANNNNTTC	1 cut(s)	787
XspI	CTAG	2 cut(s)	336, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.