RLG00000022791

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006843
Physical Location & Seq
Forward (+)
12280262 .. 12284524
4263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022791

Sequence Viewer

Length: 921 bp
ATGGATGCTAAAGCCAAGAACAAGGCGCTGTTTCGTGCCAAATTGAATGCCCAGAAGAAGGAAAAGCGCATAAACTCTCCCCTTGTACGGTATAATGATTCTGACCAGCCTGTATGCAAGATTTGTGACGTTGTGTTGAAATCTGAATCCATTTGGGATGCACATCAACTCTCTCGTAAACATAAAGAGGCAATAATTAACCTCAGAGCTACAGCAGGTGGAGTAAACCGAGTAAACAGTGCAACCACTGAAGCCCATCCAGAATTGTCTAAACCTAAGCATGGACATGCTTTGGAGTTGGATGACCCTAAACCTGAGCGCTCTCCCGAGTTGCTCAGACCTCAGACGTCTTCTGGGCTTCCTCCGGGTTTTTTTGATAACCAGCCACAAAAGCGAAGTACTGGAACGGACTCTTACACATCAGTGGAGACTGATTCGTACAAAAAGATGCAGAACAGAGGTATTGAGCCTTCTGGGGACCTTACACAGGCAGTGTCACAGATTGCCAGTCCACAAGCTAAGCAAATGAAGGGAGCTCTTCCTGAAGGATTCTTTGATAACAAGGAAGCGGATTTATCTGCACGCGGAATAAAGCTTGTCAAGCCAGATGTCAAAGATGAGTACAAAGAATTTGAGAAGTTGATCCAAGAGGACTTGAAGGAGGTTGACAATCGTTTAGAAGAAGAGGAGATTGATGCTGCTGAAATGATAGAAGAGGCCGAATCTGTAGAGCAAAAAACATATAGGGAGAAAGTGAAATTGATGAGAAAGAAGAGAATGGAGTTGAAGGCTGCCAAAGCTGCTAAGCGTAGAAAAGGTTCGGAATTTGACAAGAAGGAGGAGCCCAGTCATGAAGAGTCATCTAGTGATGGTGACAGTGATGAGAATTTTGCAGTGGATTGGAGAGCTCAACATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

307

Amino Acids

34.62

Weight (kDa)

6.44

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 38 - 61 1.5e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
AatII GACGTC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 206
AccII CGCG 1 cut(s) 585
AciI CCGC 2 cut(s) 569, 585
AclWI GGATC 1 cut(s) 637
AcsI RAATTY 3 cut(s) 629, 824, 886
AcuI CTGAAG 2 cut(s) 270, 564
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 4 cut(s) 87, 400, 440, 623
AfeI AGCGCT 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
AgsI TTSAA 4 cut(s) 46, 139, 658, 787
AleI CACNNNNGTG 1 cut(s) 422
AluBI AGCT 6 cut(s) 209, 518, 536, 595, 800, 908
AluI AGCT 6 cut(s) 209, 518, 536, 595, 800, 908
Alw21I GWGCWC 2 cut(s) 538, 910
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 320
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 3 cut(s) 698, 791, 800
ApoI RAATTY 3 cut(s) 629, 824, 886
Asp700I GAANNNNTTC 1 cut(s) 817
AspLEI GCGC 3 cut(s) 28, 69, 321
AspS9I GGNCC 1 cut(s) 478
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 478
BanII GRGCYC 3 cut(s) 538, 846, 910
BarI GAAGNNNNNNTAC 2 cut(s) 454, 486
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 538, 910
BbvI GCAGC 3 cut(s) 685, 778, 787
BccI CCATC 2 cut(s) 264, 863
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 864
BfmI CTRYAG 2 cut(s) 210, 726
BfoI RGCGCY 2 cut(s) 29, 322
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 699, 792, 801
BlpI GCTNAGC 2 cut(s) 519, 804
BlsI GCNGC 3 cut(s) 700, 793, 802
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 2 cut(s) 479, 843
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 3 cut(s) 148, 438, 685
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 1 cut(s) 342
Bpu10I CCTNAGC 2 cut(s) 276, 315
Bpu1102I GCTNAGC 2 cut(s) 519, 804
BpuMI CCSGG 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 347
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
Bse1I ACTGG 3 cut(s) 406, 507, 846
Bse8I GATNNNNATC 1 cut(s) 162
BseGI GGATG 4 cut(s) 10, 163, 256, 307
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
BseMII CTCAG 4 cut(s) 217, 306, 349, 356
BseNI ACTGG 3 cut(s) 406, 507, 846
BseRI GAGGAG 2 cut(s) 701, 854
BseXI GCAGC 3 cut(s) 685, 778, 787
BsgI GTGCAG 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 1 cut(s) 719
BsiHKAI GWGCWC 2 cut(s) 538, 910
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 538, 846, 910
Bsp143I GATC 1 cut(s) 642
Bsp1720I GCTNAGC 2 cut(s) 519, 804
BspACI CCGC 2 cut(s) 569, 585
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 4 cut(s) 216, 307, 348, 355
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 479, 843
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 543
BsrI ACTGG 3 cut(s) 406, 507, 846
BssMI GATC 1 cut(s) 642
BssNI GRCGYC 1 cut(s) 347
Bst4CI ACNGT 3 cut(s) 90, 239, 878
Bst6I CTCTTC 5 cut(s) 543, 678, 708, 767, 849
BstACI GRCGYC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 7 cut(s) 203, 276, 315, 335, 342, 519, 804
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 4 cut(s) 10, 163, 256, 307
BstFNI CGCG 1 cut(s) 585
BstH2I RGCGCY 2 cut(s) 29, 322
BstHHI GCGC 3 cut(s) 28, 69, 321
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 4 cut(s) 391, 601, 797, 800
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 210, 726
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 685, 778, 787
BstV2I GAAGAC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 719
BtsCI GGATG 4 cut(s) 10, 163, 256, 307
BtsI GCAGTG 2 cut(s) 498, 900
BtsIMutI CAGTG 6 cut(s) 244, 246, 429, 498, 883, 900
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 583
CciI TCATGA 1 cut(s) 850
CfoI GCGC 3 cut(s) 28, 69, 321
Cfr13I GGNCC 1 cut(s) 478
Csp6I GTAC 4 cut(s) 86, 399, 439, 622
CviAII CATG 3 cut(s) 281, 287, 851
CviQI GTAC 4 cut(s) 86, 399, 439, 622
DdeI CTNAG 7 cut(s) 203, 276, 315, 335, 342, 519, 804
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
Eam1104I CTCTTC 5 cut(s) 543, 678, 708, 767, 849
EarI CTCTTC 5 cut(s) 543, 678, 708, 767, 849
Ecl136II GAGCTC 2 cut(s) 536, 908
Eco24I GRGCYC 3 cut(s) 538, 846, 910
Eco47I GGWCC 1 cut(s) 478
Eco47III AGCGCT 1 cut(s) 320
Eco53kI GAGCTC 2 cut(s) 536, 908
Eco57I CTGAAG 2 cut(s) 270, 564
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 2 cut(s) 536, 908
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 478
EcoT38I GRGCYC 3 cut(s) 538, 846, 910
FaeI CATG 3 cut(s) 284, 290, 854
FaiI YATR 9 cut(s) 71, 93, 115, 183, 282, 288, 742, 744, 852
FaqI GGGAC 1 cut(s) 491
FatI CATG 3 cut(s) 280, 286, 850
Fnu4HI GCNGC 3 cut(s) 699, 792, 801
FokI GGATG 4 cut(s) 17, 170, 243, 314
FriOI GRGCYC 3 cut(s) 538, 846, 910
Fsp4HI GCNGC 3 cut(s) 699, 792, 801
FspBI CTAG 1 cut(s) 864
GlaI GCGC 3 cut(s) 27, 68, 320
GluI GCNGC 3 cut(s) 699, 792, 801
HaeII RGCGCY 2 cut(s) 29, 322
HaeIII GGCC 1 cut(s) 719
HapII CCGG 1 cut(s) 365
HhaI GCGC 3 cut(s) 28, 69, 321
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 3 cut(s) 284, 290, 854
Hin6I GCGC 3 cut(s) 26, 67, 319
HinP1I GCGC 3 cut(s) 26, 67, 319
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 7 cut(s) 98, 146, 410, 434, 549, 722, 857
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 5 cut(s) 179, 226, 235, 512, 667
Hpy188I TCNGA 6 cut(s) 103, 145, 206, 338, 345, 823
Hpy188III TCNNGA 4 cut(s) 260, 326, 542, 851
Hpy8I GTNNAC 5 cut(s) 179, 226, 235, 512, 667
HpyAV CCTTC 7 cut(s) 52, 480, 523, 539, 652, 781, 829
HpyCH4III ACNGT 3 cut(s) 90, 239, 878
HpyCH4IV ACGT 2 cut(s) 129, 347
HpyCH4V TGCA 6 cut(s) 117, 161, 242, 451, 581, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 391, 601, 797, 800
HpyF3I CTNAG 7 cut(s) 203, 276, 315, 335, 342, 519, 804
HpySE526I ACGT 2 cut(s) 129, 347
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 3 cut(s) 284, 290, 854
HspAI GCGC 3 cut(s) 26, 67, 319
Kzo9I GATC 1 cut(s) 642
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 2 cut(s) 533, 841
Lsp1109I GCAGC 3 cut(s) 685, 778, 787
LweI GCATC 3 cut(s) 148, 438, 685
MaeI CTAG 1 cut(s) 864
MaeII ACGT 2 cut(s) 129, 347
MaeIII GTNAC 3 cut(s) 125, 495, 872
MalI GATC 1 cut(s) 644
MboI GATC 1 cut(s) 642
MboII GAAGA 8 cut(s) 67, 342, 530, 692, 695, 725, 784, 866
MhlI GDGCHC 3 cut(s) 538, 846, 910
MluCI AATT 7 cut(s) 41, 195, 263, 629, 758, 824, 886
MlyI GAGTC 2 cut(s) 404, 866
MmeI TCCRAC 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 817
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 2 cut(s) 285, 422
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 52
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 4 cut(s) 391, 601, 797, 800
NciI CCSGG 1 cut(s) 366
NdeII GATC 1 cut(s) 642
NlaIII CATG 3 cut(s) 284, 290, 854
NlaIV GGNNCC 2 cut(s) 479, 843
NmuCI GTSAC 3 cut(s) 125, 495, 872
NspI RCATGY 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 422
PagI TCATGA 1 cut(s) 850
PaqCI CACCTGC 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 543
PctI GAATGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 817
PfeI GAWTC 5 cut(s) 98, 146, 434, 549, 722
PkrI GCNGC 3 cut(s) 700, 793, 802
PleI GAGTC 2 cut(s) 404, 865
PpsI GAGTC 2 cut(s) 404, 865
PpuMI RGGWCCY 1 cut(s) 478
Psp124BI GAGCTC 2 cut(s) 538, 910
Psp5II RGGWCCY 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 479, 843
PspPI GGNCC 1 cut(s) 478
PspPPI RGGWCCY 1 cut(s) 478
PsrI GAACNNNNNNTAC 2 cut(s) 802, 834
RsaI GTAC 4 cut(s) 87, 400, 440, 623
RsaNI GTAC 4 cut(s) 86, 399, 439, 622
RseI CAYNNNNRTG 2 cut(s) 285, 422
SacI GAGCTC 2 cut(s) 538, 910
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 3 cut(s) 699, 792, 801
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 1 cut(s) 478
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 2 cut(s) 404, 866
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 3 cut(s) 538, 846, 910
SfaNI GCATC 3 cut(s) 148, 438, 685
SfcI CTRYAG 2 cut(s) 210, 726
SinI GGWCC 1 cut(s) 478
SmiMI CAYNNNNRTG 2 cut(s) 285, 422
Sse9I AATT 7 cut(s) 41, 195, 263, 629, 758, 824, 886
SsiI CCGC 2 cut(s) 569, 585
SspMI CTAG 1 cut(s) 864
SstI GAGCTC 2 cut(s) 538, 910
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 90, 239, 878
TaiI ACGT 2 cut(s) 132, 350
TasI AATT 7 cut(s) 41, 195, 263, 629, 758, 824, 886
TatI WGTACW 2 cut(s) 398, 621
TfiI GAWTC 5 cut(s) 98, 146, 434, 549, 722
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 6 cut(s) 244, 253, 429, 498, 883, 900
TseFI GTSAC 3 cut(s) 125, 495, 872
TseI GCWGC 3 cut(s) 698, 791, 800
Tsp45I GTSAC 3 cut(s) 125, 495, 872
TspDTI ATGAA 2 cut(s) 542, 867
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 6 cut(s) 244, 253, 429, 498, 883, 900
VpaK11BI GGWCC 1 cut(s) 478
XagI CCTNNNNNAGG 1 cut(s) 485
XapI RAATTY 3 cut(s) 629, 824, 886
XceI RCATGY 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 817
XspI CTAG 1 cut(s) 864
ZraI GACGTC 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.