Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006843

Physical Location & Seq

Genomic Coordinates Reverse (-)

3538623 .. 3542238

Gene Structure 3616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1042200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTATGCTAAAGGCAGGAACAAGGCGCTGTTTCGTGCGAAATTGAATGCCCAGAAGAACGACAAGCGCATCTCTTCTCGTACGCCTGAGTGCAGGGTTTGTGACATTACTCTGAAATCTGAATACCAATGGGATGCGCATCAAGCATCTCGTAAACATCGTGAGGCACTAAGTAATTTCAAAGCTACATCTGCTGGACTAAACCAAGTCAACAATACAAAAGCTGAAGCCGGTCCGGAATTGCCAAAATCTAAGCCTGAACATTCTGTGGAGTTGCATATACCAGGACCTGAACGCTCTACAGAATTGCCTAGAAAGCAGTCGTCATCTGAGCTGCCTCCTGATTTTTTTGATAACCATGATGCAAAAAAGCAAAATACAGGAAGGGAAACAGTGCAGACAAGAAATATTGAGCCTGCCAGGGACCTTACACAGACATCATCACAGATTGCCAGTTCAGAGGCCAAGCAAATAAAGGGAGCTCTTCCTGAAGGCTTCTTTGACAACAAGGAAGCTGATTTATCTGCACGAGGAATAAAGCCTGGTAAGCAAGATTTGATACAAGAGGACTTGAAGGAGGTCGATAATCGTCTGGAAGAAGAGGAGATTGATGCTGGTGAGACGATAGAAGAGGCTGAATCAGTGGAGCAAAGGGCATATAGGGAAAAAGTGGAATTGTTGAAGAAGAAAAAAATGGCACTGAAGGCTGCCATTGCTGCGAAGCGTAGGAGACTTTCAGAGGTTGTAAAAAAGGAGTCTAGCCACGGTGAGTCATCGAGTGATATTGATACGGATGAGAATTTTGCAGTGGATTGGAGAGCTCAACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_jaz zf-met

Protein Analysis

278

Amino Acids

31.24

Weight (kDa)

7.08

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	30 - 53	1.8e-07	Zinc-finger of C2H2 type
zf-C2H2_jaz	PF12171	30 - 54	8.1e-07	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02860 AT3G02860
fragaria_vesca	FvH4_1g30030 FvH4_1g30030 FvH4_1g30030 FvH4_1g30030
malus_domestica	MD02G1273300.v1.1 MD07G1042200.v1.1
prunus_persica	Prupe.2G048000_v2.0.a1
pyrus_communis	pycom02g23420 pycom07g02980
rosa_chinensis	RchiOBHm_Chr3g0492111
rosa_laevigata	RLG00000022791
rosa_multiflora	Rmu_sc0003579.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392500
rosa_rugosa	Rorug03G0252100 Rorug03G0252200 Rorug03G0252300 Rorug03G0252400
rosa_samantha	Rh3AG302200 Rh3BG321100 Rh3BG338100 Rh3CG319600 Rh3CG335600 Rh3DG337700
rosa_wichuraiana	Rw3G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	799
AcuI	CTGAAG	3 cut(s)	246, 510, 722
AfaI	GTAC	1 cut(s)	82
AgsI	TTSAA	4 cut(s)	46, 181, 574, 682
AjnI	CCWGG	3 cut(s)	283, 419, 541
AluBI	AGCT	6 cut(s)	185, 224, 334, 482, 515, 821
AluI	AGCT	6 cut(s)	185, 224, 334, 482, 515, 821
Alw21I	GWGCWC	2 cut(s)	484, 823
Alw26I	GTCTC	2 cut(s)	614, 724
AlwNI	CAGNNNCTG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	3 cut(s)	334, 707, 716
ApoI	RAATTY	1 cut(s)	799
AspLEI	GCGC	3 cut(s)	28, 69, 139
AspS9I	GGNCC	3 cut(s)	233, 287, 424
AsuHPI	GGTGA	2 cut(s)	629, 779
AvaII	GGWCC	3 cut(s)	233, 287, 424
BanII	GRGCYC	2 cut(s)	484, 823
BauI	CACGAG	1 cut(s)	528
Bbv12I	GWGCWC	2 cut(s)	484, 823
BbvI	GCAGC	3 cut(s)	321, 694, 703
BciT130I	CCWGG	3 cut(s)	285, 421, 543
BcoDI	GTCTC	2 cut(s)	614, 724
BfaI	CTAG	2 cut(s)	312, 759
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	3 cut(s)	335, 708, 717
BlsI	GCNGC	3 cut(s)	336, 709, 718
Bme1390I	CCNGG	3 cut(s)	285, 421, 543
Bme18I	GGWCC	3 cut(s)	233, 287, 424
BmgT120I	GGNCC	3 cut(s)	233, 287, 424
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	3 cut(s)	285, 421, 543
BmsI	GCATC	6 cut(s)	78, 124, 148, 155, 352, 601
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	420, 763
BsaWI	WCCGGW	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	3 cut(s)	285, 421, 543
BseDI	CCNNGG	2 cut(s)	420, 763
BseGI	GGATG	2 cut(s)	139, 799
BseJI	GATNNNNATC	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	78, 321
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	3 cut(s)	321, 694, 703
BsgI	GTGCAG	3 cut(s)	112, 416, 510
BshFI	GGCC	1 cut(s)	464
BsiHKAI	GWGCWC	2 cut(s)	484, 823
BsiSI	CCGG	2 cut(s)	231, 236
BsiWI	CGTACG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	614, 724
BsmBI	CGTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	484, 823
Bsp13I	TCCGGA	1 cut(s)	235
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	2 cut(s)	79, 322
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	453
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	420, 763
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	285, 421, 543
Bst4CI	ACNGT	2 cut(s)	394, 767
Bst6I	CTCTTC	4 cut(s)	79, 489, 594, 624
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	4 cut(s)	87, 170, 252, 330
BstDSI	CCRYGG	1 cut(s)	763
BstF5I	GGATG	2 cut(s)	139, 799
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	3 cut(s)	28, 69, 139
BstMAI	GTCTC	2 cut(s)	614, 724
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 191, 316, 547, 704, 713, 716
BstNI	CCWGG	3 cut(s)	285, 421, 543
BstSCI	CCNGG	3 cut(s)	283, 419, 541
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	321, 694, 703
BsuRI	GGCC	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	763
BtsCI	GGATG	2 cut(s)	139, 799
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	4 cut(s)	399, 648, 698, 813
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	3 cut(s)	28, 69, 139
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	233, 287, 424
CpoI	CGGWCCG	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	81
CspI	CGGWCCG	1 cut(s)	233
CviAII	CATG	1 cut(s)	359
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	4 cut(s)	87, 170, 252, 330
Eam1104I	CTCTTC	4 cut(s)	79, 489, 594, 624
EarI	CTCTTC	4 cut(s)	79, 489, 594, 624
Ecl136II	GAGCTC	2 cut(s)	482, 821
Eco24I	GRGCYC	2 cut(s)	484, 823
Eco47I	GGWCC	3 cut(s)	233, 287, 424
Eco53kI	GAGCTC	2 cut(s)	482, 821
Eco57I	CTGAAG	3 cut(s)	246, 510, 722
EcoICRI	GAGCTC	2 cut(s)	482, 821
EcoO109I	RGGNCCY	2 cut(s)	287, 424
EcoRII	CCWGG	3 cut(s)	283, 419, 541
EcoT38I	GRGCYC	2 cut(s)	484, 823
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	1 cut(s)	362
FaiI	YATR	6 cut(s)	6, 279, 281, 360, 658, 660
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	335, 708, 717
FokI	GGATG	2 cut(s)	146, 806
FriOI	GRGCYC	2 cut(s)	484, 823
Fsp4HI	GCNGC	3 cut(s)	335, 708, 717
FspAI	RTGCGCAY	1 cut(s)	138
FspBI	CTAG	2 cut(s)	312, 759
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	3 cut(s)	27, 68, 138
GluI	GCNGC	3 cut(s)	335, 708, 717
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	2 cut(s)	231, 236
HhaI	GCGC	3 cut(s)	28, 69, 139
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	3 cut(s)	26, 67, 137
HinP1I	GCGC	3 cut(s)	26, 67, 137
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	638, 755, 770
HpaII	CCGG	2 cut(s)	231, 236
HphI	GGTGA	2 cut(s)	629, 779
Hpy166II	GTNNAC	2 cut(s)	155, 211
Hpy188I	TCNGA	5 cut(s)	114, 121, 331, 460, 739
Hpy188III	TCNNGA	5 cut(s)	161, 236, 341, 488, 593
Hpy8I	GTNNAC	2 cut(s)	155, 211
HpyAV	CCTTC	4 cut(s)	378, 485, 568, 697
HpyCH4III	ACNGT	2 cut(s)	394, 767
HpyCH4V	TGCA	6 cut(s)	93, 277, 365, 397, 527, 806
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 191, 316, 547, 704, 713, 716
HpyF3I	CTNAG	4 cut(s)	87, 170, 252, 330
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	3 cut(s)	26, 67, 137
Kpn2I	TCCGGA	1 cut(s)	235
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	2 cut(s)	479, 646
Lsp1109I	GCAGC	3 cut(s)	321, 694, 703
LweI	GCATC	6 cut(s)	78, 124, 148, 155, 352, 601
MaeI	CTAG	2 cut(s)	312, 759
MaeIII	GTNAC	1 cut(s)	101
MboII	GAAGA	8 cut(s)	66, 67, 476, 608, 611, 641, 694, 697
MhlI	GDGCHC	2 cut(s)	484, 823
MluCI	AATT	6 cut(s)	41, 175, 239, 305, 674, 799
MlyI	GAGTC	2 cut(s)	764, 779
MnlI	CCTC	9 cut(s)	157, 348, 454, 524, 559, 571, 595, 625, 733
MroI	TCCGGA	1 cut(s)	235
MspI	CCGG	2 cut(s)	231, 236
MspR9I	CCNGG	3 cut(s)	285, 421, 543
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	3 cut(s)	285, 421, 543
MwoI	GCNNNNNNNGC	7 cut(s)	143, 191, 316, 547, 704, 713, 716
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	101
NsbI	TGCGCA	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	638
Pfl23II	CGTACG	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	336, 709, 718
PleI	GAGTC	2 cut(s)	763, 778
PpsI	GAGTC	2 cut(s)	763, 778
PpuMI	RGGWCCY	2 cut(s)	287, 424
Psp124BI	GAGCTC	2 cut(s)	484, 823
Psp5II	RGGWCCY	2 cut(s)	287, 424
Psp6I	CCWGG	3 cut(s)	283, 419, 541
PspGI	CCWGG	3 cut(s)	283, 419, 541
PspLI	CGTACG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	3 cut(s)	233, 287, 424
PspPPI	RGGWCCY	2 cut(s)	287, 424
PstNI	CAGNNNCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
Rsr2I	CGGWCCG	1 cut(s)	233
RsrII	CGGWCCG	1 cut(s)	233
SacI	GAGCTC	2 cut(s)	484, 823
SapI	GCTCTTC	1 cut(s)	489
SatI	GCNGC	3 cut(s)	335, 708, 717
Sau96I	GGNCC	3 cut(s)	233, 287, 424
SchI	GAGTC	2 cut(s)	764, 779
ScrFI	CCNGG	3 cut(s)	285, 421, 543
SduI	GDGCHC	2 cut(s)	484, 823
SfaNI	GCATC	6 cut(s)	78, 124, 148, 155, 352, 601
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	3 cut(s)	233, 287, 424
Sse9I	AATT	6 cut(s)	41, 175, 239, 305, 674, 799
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	2 cut(s)	312, 759
SstI	GAGCTC	2 cut(s)	484, 823
StyD4I	CCNGG	3 cut(s)	283, 419, 541
TaaI	ACNGT	2 cut(s)	394, 767
TaqI	TCGA	2 cut(s)	582, 776
TasI	AATT	6 cut(s)	41, 175, 239, 305, 674, 799
TfiI	GAWTC	1 cut(s)	638
TscAI	CASTG	4 cut(s)	399, 648, 705, 813
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	334, 707, 716
Tsp45I	GTSAC	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	4 cut(s)	399, 648, 705, 813
VpaK11BI	GGWCC	3 cut(s)	233, 287, 424
XapI	RAATTY	1 cut(s)	799
XspI	CTAG	2 cut(s)	312, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.