Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006843

Physical Location & Seq

Genomic Coordinates Reverse (-)

33032818 .. 33033653

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG321100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGGAGGGTCCACCAACGAAGATGAAGATGCACTCAGATGAGTACAAAGAATTTGAGAAGTTGATCCAAGAGGACTTGAAGGAGCTTGACAATCGTTTAGAAGAAAAGGAGATTGATGCTACTGAAATGATAGAAGAGGCCGAATCTGTAGAGCAAAAAACATACAGGGAGAAAGTGAAATTGATGAGAAAGAAGGGAATGGAGTTGAAGGCTGCCAATGCTGCCAAGCGTAGAAAAGCTTCGGAATTTGACAAGGAGGAGCCCAGTCATGAAGAGTCATCTCGTGATAGTGACAGTGACGAAAATTTTGCAGTGGATTGGAGAGCTCAACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_jaz zf-met

Protein Analysis

113

Amino Acids

13.36

Weight (kDa)

4.96

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02860 AT3G02860
fragaria_vesca	FvH4_1g30030 FvH4_1g30030 FvH4_1g30030 FvH4_1g30030
malus_domestica	MD02G1273300.v1.1 MD07G1042200.v1.1
prunus_persica	Prupe.2G048000_v2.0.a1
pyrus_communis	pycom02g23420 pycom07g02980
rosa_chinensis	RchiOBHm_Chr3g0492111
rosa_laevigata	RLG00000022791
rosa_multiflora	Rmu_sc0003579.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392500
rosa_rugosa	Rorug03G0252100 Rorug03G0252200 Rorug03G0252300 Rorug03G0252400
rosa_samantha	Rh3AG302200 Rh3BG321100 Rh3BG338100 Rh3CG319600 Rh3CG335600 Rh3DG337700
rosa_wichuraiana	Rw3G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	3 cut(s)	53, 248, 307
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	82, 211
AluBI	AGCT	3 cut(s)	88, 242, 329
AluI	AGCT	3 cut(s)	88, 242, 329
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	215, 224
ApoI	RAATTY	3 cut(s)	53, 248, 307
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
Asp700I	GAANNNNTTC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	267, 331
BarI	GAAGNNNNNNTAC	2 cut(s)	226, 258
BauI	CACGAG	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	202, 211
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	216, 225
BlsI	GCNGC	2 cut(s)	217, 226
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	12, 264
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	21, 109
BmuI	ACTGGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	202, 211
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	267, 331
Bsp143I	GATC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	12, 264
BspPI	GGATC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	2 cut(s)	132, 270
BstDEI	CTNAG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 224
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	202, 211
BsuRI	GGCC	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	304, 321
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	6 cut(s)	88, 143, 215, 242, 265, 329
CviKI_1	RGCY	6 cut(s)	88, 143, 215, 242, 265, 329
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	132, 270
EarI	CTCTTC	2 cut(s)	132, 270
Ecl136II	GAGCTC	1 cut(s)	329
Eco24I	GRGCYC	2 cut(s)	267, 331
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	329
EcoT38I	GRGCYC	2 cut(s)	267, 331
FaeI	CATG	1 cut(s)	275
FaiI	YATR	2 cut(s)	166, 273
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	216, 225
FriOI	GRGCYC	2 cut(s)	267, 331
Fsp4HI	GCNGC	2 cut(s)	216, 225
GluI	GCNGC	2 cut(s)	216, 225
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	2 cut(s)	146, 278
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	40, 247
Hpy188III	TCNNGA	2 cut(s)	272, 287
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	76, 190, 205
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	34, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 224
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	85, 262
LpnPI	CCDG	2 cut(s)	154, 280
Lsp1109I	GCAGC	2 cut(s)	202, 211
LweI	GCATC	2 cut(s)	21, 109
MaeIII	GTNAC	2 cut(s)	293, 299
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	5 cut(s)	34, 40, 116, 149, 287
MhlI	GDGCHC	2 cut(s)	267, 331
MluCI	AATT	4 cut(s)	53, 182, 248, 307
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	67, 133, 253
MroXI	GAANNNNTTC	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	221, 224
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	2 cut(s)	12, 264
NmuCI	GTSAC	2 cut(s)	293, 299
PagI	TCATGA	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	217, 226
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	12, 264
PspPI	GGNCC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	331
SatI	GCNGC	2 cut(s)	216, 225
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	267, 331
SetI	ASST	3 cut(s)	90, 244, 331
SfaNI	GCATC	2 cut(s)	21, 109
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	4 cut(s)	53, 182, 248, 307
SstI	GAGCTC	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	299
TasI	AATT	4 cut(s)	53, 182, 248, 307
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	2 cut(s)	304, 321
TseFI	GTSAC	2 cut(s)	293, 299
TseI	GCWGC	2 cut(s)	215, 224
Tsp45I	GTSAC	2 cut(s)	293, 299
TspDTI	ATGAA	2 cut(s)	41, 288
TspRI	CASTG	2 cut(s)	304, 321
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	3 cut(s)	53, 248, 307
XmnI	GAANNNNTTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.