Rroxscaffold_6G00392500

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006843
Physical Location & Seq
Forward (+)
12097983 .. 12102940
4958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392500.1

Sequence Viewer

Length: 918 bp
ATGGATGCTAAAGCCAAGAACAAGGCGCTGTTTCGTGCCAAATTGAATGCCCAGAAGAAGGAAAAGCGCATAAACTCTCCCCTTGTACGGTATAATGATTCTGACCAGCCTGTATGCAAGATTTGTGACATTGTGTTGAAATCTGAATCCATTTGGGATGCACATCAACTCTCTCGTAAACATAAAGAGGCAATAATTAACCTCAGAGCTACAGCAGGTGGAGTAAACCGAATAAACAGTACAACCACTGAAGCCCGTTCAGAATTGTCTAAACCTAACCATGGGAGTTCTTTGGAGTTGGAGGACCCTAAACCTGAGCGCTCGCCTGAGTTGCTTAGACCTCAGACGTCTTCTGGGCTTCCTCCGGGTTTTTTTGATAACCAGCCACAAAAGAGAAGTACTGGAGCGGACTCTTACACATCAGTGGAGACTGATTCATACAAAAAGATGCAGAACAGAGGTATTGAGCCTTCTGGGGACCTTACACAGGTAATGTCACAGATTGCCAGTCCACAAGCTAAGCAAATGAAGGGAGCTCTTCCTGAAGGCTTCTTTGATAACAAGGAAGCGGATTTATCTGCACGTGGAATAAAGCTTGTCAAGCCAGATGTCAAAGATGAGTACAAAGAATTTGAGAAGTTGATCCAAGAGGACTTGAAGGAGGTTGACAATCGTTTAGAAGAAGAGGAGATTGATGCTGCTGAAATGATAGAAGAGGCCGAATCTGTAGAGCAAAAAACATATAGAGAGAAAGTGAAATTGATGAGAAAGAAGAGAATGGAGTTGAAGGCTGCCAATGCTGCCAAGCGTAGAAAAGCTTCGGAATTTGACAAGGTGGAGCCCAGTCATGAAGAGTCATCTAGTGATGGTGACAGTGATGAGAATTTTGCAGTGGATTGGAGAGCTCAACATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

305

Amino Acids

34.52

Weight (kDa)

6.1

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 38 - 61 2e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
AatII GACGTC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 407
AciI CCGC 2 cut(s) 407, 569
AclWI GGATC 1 cut(s) 637
AcsI RAATTY 3 cut(s) 629, 824, 883
AcuI CTGAAG 2 cut(s) 270, 564
AcvI CACGTG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 4 cut(s) 87, 241, 400, 623
AfeI AGCGCT 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
AgsI TTSAA 4 cut(s) 46, 139, 658, 787
AleI CACNNNNGTG 1 cut(s) 422
AluBI AGCT 6 cut(s) 209, 518, 536, 595, 818, 905
AluI AGCT 6 cut(s) 209, 518, 536, 595, 818, 905
Alw21I GWGCWC 2 cut(s) 538, 907
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 637
Aor51HI AGCGCT 1 cut(s) 320
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 3 cut(s) 698, 791, 800
ApoI RAATTY 3 cut(s) 629, 824, 883
Asp700I GAANNNNTTC 1 cut(s) 817
AspLEI GCGC 3 cut(s) 28, 69, 321
AspS9I GGNCC 2 cut(s) 304, 478
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 881
AvaII GGWCC 2 cut(s) 304, 478
BanII GRGCYC 3 cut(s) 538, 843, 907
BarI GAAGNNNNNNTAC 4 cut(s) 454, 486, 802, 834
BbrPI CACGTG 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 538, 907
BbvI GCAGC 3 cut(s) 685, 778, 787
BccI CCATC 1 cut(s) 860
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 861
BfmI CTRYAG 2 cut(s) 210, 726
BfoI RGCGCY 2 cut(s) 29, 322
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 699, 792, 801
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 3 cut(s) 700, 793, 802
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 2 cut(s) 304, 478
BmgT120I GGNCC 2 cut(s) 304, 478
BmiI GGNNCC 3 cut(s) 306, 479, 840
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 3 cut(s) 148, 438, 685
BmuI ACTGGG 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
Bse1I ACTGG 3 cut(s) 406, 507, 843
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 2 cut(s) 10, 163
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
BseMII CTCAG 4 cut(s) 217, 306, 318, 356
BseNI ACTGG 3 cut(s) 406, 507, 843
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 3 cut(s) 685, 778, 787
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 1 cut(s) 719
BsiHKAI GWGCWC 2 cut(s) 538, 907
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 4 cut(s) 58, 87, 281, 487
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 1 cut(s) 719
Bsp1286I GDGCHC 3 cut(s) 538, 843, 907
Bsp143I GATC 1 cut(s) 642
Bsp1720I GCTNAGC 1 cut(s) 519
Bsp19I CCATGG 1 cut(s) 280
BspACI CCGC 2 cut(s) 407, 569
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 4 cut(s) 216, 307, 319, 355
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 3 cut(s) 306, 479, 840
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 407
BsrI ACTGG 3 cut(s) 406, 507, 843
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 1 cut(s) 642
BssNI GRCGYC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 90, 239, 875
Bst6I CTCTTC 5 cut(s) 543, 678, 708, 767, 846
BstACI GRCGYC 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 6 cut(s) 203, 315, 327, 335, 342, 519
BstDSI CCRYGG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 10, 163
BstH2I RGCGCY 2 cut(s) 29, 322
BstHHI GCGC 3 cut(s) 28, 69, 321
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 4 cut(s) 331, 601, 797, 800
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 210, 726
BstV1I GCAGC 3 cut(s) 685, 778, 787
BstV2I GAAGAC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 719
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 10, 163
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 4 cut(s) 246, 429, 880, 897
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 323
CciI TCATGA 1 cut(s) 847
CfoI GCGC 3 cut(s) 28, 69, 321
Cfr13I GGNCC 2 cut(s) 304, 478
Csp6I GTAC 4 cut(s) 86, 240, 399, 622
CviAII CATG 2 cut(s) 281, 848
CviQI GTAC 4 cut(s) 86, 240, 399, 622
DdeI CTNAG 6 cut(s) 203, 315, 327, 335, 342, 519
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
Eam1104I CTCTTC 5 cut(s) 543, 678, 708, 767, 846
EarI CTCTTC 5 cut(s) 543, 678, 708, 767, 846
Ecl136II GAGCTC 2 cut(s) 536, 905
Eco130I CCWWGG 1 cut(s) 280
Eco24I GRGCYC 3 cut(s) 538, 843, 907
Eco47I GGWCC 2 cut(s) 304, 478
Eco47III AGCGCT 1 cut(s) 320
Eco53kI GAGCTC 2 cut(s) 536, 905
Eco57I CTGAAG 2 cut(s) 270, 564
Eco72I CACGTG 1 cut(s) 584
EcoICRI GAGCTC 2 cut(s) 536, 905
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoO109I RGGNCCY 2 cut(s) 304, 478
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 3 cut(s) 538, 843, 907
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 284, 851
FaiI YATR 9 cut(s) 71, 93, 115, 183, 282, 439, 742, 744, 849
FaqI GGGAC 1 cut(s) 491
FatI CATG 2 cut(s) 280, 847
Fnu4HI GCNGC 3 cut(s) 699, 792, 801
FokI GGATG 2 cut(s) 17, 170
FriOI GRGCYC 3 cut(s) 538, 843, 907
Fsp4HI GCNGC 3 cut(s) 699, 792, 801
FspBI CTAG 1 cut(s) 861
GlaI GCGC 3 cut(s) 27, 68, 320
GluI GCNGC 3 cut(s) 699, 792, 801
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 2 cut(s) 29, 322
HaeIII GGCC 1 cut(s) 719
HapII CCGG 1 cut(s) 365
HhaI GCGC 3 cut(s) 28, 69, 321
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 2 cut(s) 284, 851
Hin6I GCGC 3 cut(s) 26, 67, 319
HinP1I GCGC 3 cut(s) 26, 67, 319
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 2 cut(s) 593, 816
HinfI GANTC 6 cut(s) 98, 146, 410, 434, 722, 854
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 881
Hpy166II GTNNAC 4 cut(s) 179, 226, 512, 667
Hpy188I TCNGA 6 cut(s) 103, 145, 206, 262, 345, 823
Hpy188III TCNNGA 2 cut(s) 542, 848
Hpy8I GTNNAC 4 cut(s) 179, 226, 512, 667
HpyAV CCTTC 6 cut(s) 52, 480, 523, 539, 652, 781
HpyCH4III ACNGT 3 cut(s) 90, 239, 875
HpyCH4IV ACGT 2 cut(s) 347, 583
HpyCH4V TGCA 5 cut(s) 117, 161, 451, 581, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 601, 797, 800
HpyF3I CTNAG 6 cut(s) 203, 315, 327, 335, 342, 519
HpySE526I ACGT 2 cut(s) 347, 583
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 2 cut(s) 284, 851
HspAI GCGC 3 cut(s) 26, 67, 319
Kzo9I GATC 1 cut(s) 642
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 3 cut(s) 404, 533, 838
Lsp1109I GCAGC 3 cut(s) 685, 778, 787
LweI GCATC 3 cut(s) 148, 438, 685
MaeI CTAG 1 cut(s) 861
MaeII ACGT 2 cut(s) 347, 583
MaeIII GTNAC 3 cut(s) 125, 495, 869
MalI GATC 1 cut(s) 644
MbiI CCGCTC 1 cut(s) 407
MboI GATC 1 cut(s) 642
MboII GAAGA 8 cut(s) 67, 342, 530, 692, 695, 725, 784, 863
MhlI GDGCHC 3 cut(s) 538, 843, 907
MluCI AATT 7 cut(s) 41, 195, 263, 629, 758, 824, 883
MlyI GAGTC 2 cut(s) 404, 863
MmeI TCCRAC 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 817
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 4 cut(s) 331, 601, 797, 800
NciI CCSGG 1 cut(s) 366
NcoI CCATGG 1 cut(s) 280
NdeII GATC 1 cut(s) 642
NlaIII CATG 2 cut(s) 284, 851
NlaIV GGNNCC 3 cut(s) 306, 479, 840
NmuCI GTSAC 3 cut(s) 125, 495, 869
OliI CACNNNNGTG 1 cut(s) 422
PagI TCATGA 1 cut(s) 847
PaqCI CACCTGC 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 543
PctI GAATGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 817
PfeI GAWTC 4 cut(s) 98, 146, 434, 722
PkrI GCNGC 3 cut(s) 700, 793, 802
PleI GAGTC 2 cut(s) 404, 862
PmaCI CACGTG 1 cut(s) 584
PmlI CACGTG 1 cut(s) 584
PpsI GAGTC 2 cut(s) 404, 862
Ppu21I YACGTR 1 cut(s) 584
PpuMI RGGWCCY 2 cut(s) 304, 478
Psp124BI GAGCTC 2 cut(s) 538, 907
Psp5II RGGWCCY 2 cut(s) 304, 478
PspCI CACGTG 1 cut(s) 584
PspN4I GGNNCC 3 cut(s) 306, 479, 840
PspPI GGNCC 2 cut(s) 304, 478
PspPPI RGGWCCY 2 cut(s) 304, 478
RsaI GTAC 4 cut(s) 87, 241, 400, 623
RsaNI GTAC 4 cut(s) 86, 240, 399, 622
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 2 cut(s) 538, 907
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 3 cut(s) 699, 792, 801
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 2 cut(s) 304, 478
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 2 cut(s) 404, 863
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 3 cut(s) 538, 843, 907
SfaNI GCATC 3 cut(s) 148, 438, 685
SfcI CTRYAG 2 cut(s) 210, 726
SinI GGWCC 2 cut(s) 304, 478
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 7 cut(s) 41, 195, 263, 629, 758, 824, 883
SsiI CCGC 2 cut(s) 407, 569
SspMI CTAG 1 cut(s) 861
SstI GAGCTC 2 cut(s) 538, 907
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 3 cut(s) 90, 239, 875
TaiI ACGT 2 cut(s) 350, 586
TasI AATT 7 cut(s) 41, 195, 263, 629, 758, 824, 883
TatI WGTACW 3 cut(s) 239, 398, 621
TfiI GAWTC 4 cut(s) 98, 146, 434, 722
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 4 cut(s) 253, 429, 880, 897
TseFI GTSAC 3 cut(s) 125, 495, 869
TseI GCWGC 3 cut(s) 698, 791, 800
Tsp45I GTSAC 3 cut(s) 125, 495, 869
TspDTI ATGAA 3 cut(s) 426, 542, 864
TspRI CASTG 4 cut(s) 253, 429, 880, 897
VpaK11BI GGWCC 2 cut(s) 304, 478
XagI CCTNNNNNAGG 1 cut(s) 485
XapI RAATTY 3 cut(s) 629, 824, 883
XmnI GAANNNNTTC 1 cut(s) 817
XspI CTAG 1 cut(s) 861
ZraI GACGTC 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.