Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006843

Physical Location & Seq

Genomic Coordinates Reverse (-)

36177437 .. 36181847

Gene Structure 4411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG338100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATGCTAAAGCCAAGAACAAGGCGCTGTTTCGTGCCAAATTGAATGCCCAGAAGAAGGAAAAGCGCATAAACTCTCCCCTTGTACGGTATAATGATTCTGACCAGCCTGTATGCAAGATTTGTGACGTTGTTTTGAAATCTGAATCCGTTTGGGACGCACATCAACTCTCTCGTAAACATAAAGAGGCAATAATTAACCTCAGAGCTACAGCAGGTGGAGTAAACCGAATAAACAGTACAACCACTGAAGCCCATTCAGAATTGTCTAAACCTAACCATGGGAATTCTTTGGAGTTGGAGGACCCTAAACCTGAGCGCTCGCCCGAGTTGCTTAGACCTCAGACGTCTTCTGGGCTTCCTCCGGGTTTTTTTGATAACCAGCCACAAAAGCGAAGTACTGGAACGGACTCTTACACATCAGTGGAGACTGATTCATACAAAAAGATGCAGAACAGAGGTATTGAGCCTTCTGGGGACCTTACACAGGCAATGTCACAGATTGCCAGTCCACAAGCTAAGCAAATGAAGGGATCTCTTCCTGAAGGCTTCTTTGATAACAAGGAAGCAGATTTATCTGCACGTGGAATAAAGCTTGTCAAGCCAGATGTCAAAGATGAGTACAAAGAATTTGAGAAGTTGATCCAAGAGGACTTGAAGGAGGTTGACAATCGTTTAGAAGAAGAGGAGATTGATGCTGCTGAAATGATAGAAGAGGCCGAATCTGTAGAGCAAAAAACATATAGGGAGAAAGTGAAATTGATGAGAAAGAAGAGAATGGAGTTGAAGGCTGCCAATGCTGCCAAGCGTAGAAAAGCTTCGGAATTTGACAAGAAGGAGGAGCCCAGTCATGAAGAGTCATCTAGTGATGGTGACAGTGATGAGAATTTTGCAGTGGATTGGAGAGCTCAACATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_jaz zf-met

Protein Analysis

306

Amino Acids

34.68

Weight (kDa)

6.01

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_jaz	PF12171	37 - 62	1.3e-06	Zinc-finger double-stranded RNA-binding
zf-met	PF12874	38 - 61	2.4e-07	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02860 AT3G02860
fragaria_vesca	FvH4_1g30030 FvH4_1g30030 FvH4_1g30030 FvH4_1g30030
malus_domestica	MD02G1273300.v1.1 MD07G1042200.v1.1
prunus_persica	Prupe.2G048000_v2.0.a1
pyrus_communis	pycom02g23420 pycom07g02980
rosa_chinensis	RchiOBHm_Chr3g0492111
rosa_laevigata	RLG00000022791
rosa_multiflora	Rmu_sc0003579.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392500
rosa_rugosa	Rorug03G0252100 Rorug03G0252200 Rorug03G0252300 Rorug03G0252400
rosa_samantha	Rh3AG302200 Rh3BG321100 Rh3BG338100 Rh3CG319600 Rh3CG335600 Rh3DG337700
rosa_wichuraiana	Rw3G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	206
AclWI	GGATC	2 cut(s)	541, 637
AcsI	RAATTY	4 cut(s)	286, 629, 824, 886
AcuI	CTGAAG	2 cut(s)	270, 564
AcvI	CACGTG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	4 cut(s)	87, 241, 400, 623
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
AgsI	TTSAA	4 cut(s)	46, 139, 658, 787
AleI	CACNNNNGTG	1 cut(s)	422
AluBI	AGCT	5 cut(s)	209, 518, 595, 818, 908
AluI	AGCT	5 cut(s)	209, 518, 595, 818, 908
Alw21I	GWGCWC	1 cut(s)	910
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	541, 637
Ama87I	CYCGRG	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	698, 791, 800
ApoI	RAATTY	4 cut(s)	286, 629, 824, 886
Asp700I	GAANNNNTTC	1 cut(s)	817
AspLEI	GCGC	3 cut(s)	28, 69, 321
AspS9I	GGNCC	2 cut(s)	304, 478
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	884
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	304, 478
BanII	GRGCYC	2 cut(s)	846, 910
BarI	GAAGNNNNNNTAC	4 cut(s)	454, 486, 802, 834
BbrPI	CACGTG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	910
BbvI	GCAGC	3 cut(s)	685, 778, 787
BccI	CCATC	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	2 cut(s)	210, 726
BfoI	RGCGCY	2 cut(s)	29, 322
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	699, 792, 801
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	3 cut(s)	700, 793, 802
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	2 cut(s)	304, 478
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	304, 478
BmiI	GGNNCC	3 cut(s)	306, 479, 843
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	438, 685
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
Bse1I	ACTGG	3 cut(s)	406, 507, 846
Bse3DI	GCAATG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	217, 306, 356
BseNI	ACTGG	3 cut(s)	406, 507, 846
BseRI	GAGGAG	2 cut(s)	701, 854
BseXI	GCAGC	3 cut(s)	685, 778, 787
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	910
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	170, 491
BslI	CCNNNNNNNGG	4 cut(s)	58, 87, 281, 487
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	170, 491
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	719
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	846, 910
Bsp143I	GATC	2 cut(s)	533, 642
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	280
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	3 cut(s)	216, 307, 355
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	3 cut(s)	306, 479, 843
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	2 cut(s)	541, 637
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	406, 507, 846
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	2 cut(s)	533, 642
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	90, 239, 878
Bst6I	CTCTTC	5 cut(s)	543, 678, 708, 767, 849
BstACI	GRCGYC	1 cut(s)	347
BstBAI	YACGTR	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	5 cut(s)	203, 315, 335, 342, 519
BstDSI	CCRYGG	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	2 cut(s)	29, 322
BstHHI	GCGC	3 cut(s)	28, 69, 321
BstKTI	GATC	2 cut(s)	536, 645
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	533, 642
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 391, 601, 797, 800
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	210, 726
BstV1I	GCAGC	3 cut(s)	685, 778, 787
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	719
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	4 cut(s)	246, 429, 883, 900
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	323
CciI	TCATGA	1 cut(s)	850
CfoI	GCGC	3 cut(s)	28, 69, 321
Cfr13I	GGNCC	2 cut(s)	304, 478
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	4 cut(s)	86, 240, 399, 622
CviAII	CATG	2 cut(s)	281, 851
CviQI	GTAC	4 cut(s)	86, 240, 399, 622
DdeI	CTNAG	5 cut(s)	203, 315, 335, 342, 519
DpnI	GATC	2 cut(s)	535, 644
DpnII	GATC	2 cut(s)	533, 642
Eam1104I	CTCTTC	5 cut(s)	543, 678, 708, 767, 849
EarI	CTCTTC	5 cut(s)	543, 678, 708, 767, 849
Ecl136II	GAGCTC	1 cut(s)	908
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	2 cut(s)	846, 910
Eco47I	GGWCC	2 cut(s)	304, 478
Eco47III	AGCGCT	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	908
Eco57I	CTGAAG	2 cut(s)	270, 564
Eco72I	CACGTG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	908
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoO109I	RGGNCCY	2 cut(s)	304, 478
EcoRI	GAATTC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	846, 910
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	284, 854
FaiI	YATR	9 cut(s)	71, 93, 115, 183, 282, 439, 742, 744, 852
FaqI	GGGAC	2 cut(s)	170, 491
FatI	CATG	2 cut(s)	280, 850
Fnu4HI	GCNGC	3 cut(s)	699, 792, 801
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	846, 910
Fsp4HI	GCNGC	3 cut(s)	699, 792, 801
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	3 cut(s)	27, 68, 320
GluI	GCNGC	3 cut(s)	699, 792, 801
HaeII	RGCGCY	2 cut(s)	29, 322
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	3 cut(s)	28, 69, 321
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	284, 854
Hin6I	GCGC	3 cut(s)	26, 67, 319
HinP1I	GCGC	3 cut(s)	26, 67, 319
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	2 cut(s)	593, 816
HinfI	GANTC	6 cut(s)	98, 146, 410, 434, 722, 857
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	4 cut(s)	179, 226, 512, 667
Hpy188I	TCNGA	6 cut(s)	103, 145, 206, 262, 345, 823
Hpy188III	TCNNGA	2 cut(s)	542, 851
Hpy8I	GTNNAC	4 cut(s)	179, 226, 512, 667
HpyAV	CCTTC	7 cut(s)	52, 480, 523, 539, 652, 781, 829
HpyCH4III	ACNGT	3 cut(s)	90, 239, 878
HpyCH4IV	ACGT	3 cut(s)	129, 347, 583
HpyCH4V	TGCA	4 cut(s)	117, 451, 581, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 391, 601, 797, 800
HpyF3I	CTNAG	5 cut(s)	203, 315, 335, 342, 519
HpySE526I	ACGT	3 cut(s)	129, 347, 583
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	284, 854
HspAI	GCGC	3 cut(s)	26, 67, 319
Kzo9I	GATC	2 cut(s)	533, 642
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	3 cut(s)	685, 778, 787
LweI	GCATC	2 cut(s)	438, 685
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	3 cut(s)	129, 347, 583
MaeIII	GTNAC	3 cut(s)	125, 495, 872
MalI	GATC	2 cut(s)	535, 644
MboI	GATC	2 cut(s)	533, 642
MboII	GAAGA	8 cut(s)	67, 342, 530, 692, 695, 725, 784, 866
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	2 cut(s)	846, 910
MluCI	AATT	8 cut(s)	41, 195, 263, 286, 629, 758, 824, 886
MlyI	GAGTC	2 cut(s)	404, 866
MmeI	TCCRAC	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	817
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	5 cut(s)	331, 391, 601, 797, 800
NciI	CCSGG	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	2 cut(s)	533, 642
NlaIII	CATG	2 cut(s)	284, 854
NlaIV	GGNNCC	3 cut(s)	306, 479, 843
NmuCI	GTSAC	3 cut(s)	125, 495, 872
OliI	CACNNNNGTG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	850
PaqCI	CACCTGC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	4 cut(s)	98, 146, 434, 722
PkrI	GCNGC	3 cut(s)	700, 793, 802
PleI	GAGTC	2 cut(s)	404, 865
PmaCI	CACGTG	1 cut(s)	584
PmlI	CACGTG	1 cut(s)	584
PpsI	GAGTC	2 cut(s)	404, 865
Ppu21I	YACGTR	1 cut(s)	584
PpuMI	RGGWCCY	2 cut(s)	304, 478
Psp124BI	GAGCTC	1 cut(s)	910
Psp5II	RGGWCCY	2 cut(s)	304, 478
PspCI	CACGTG	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	306, 479, 843
PspPI	GGNCC	2 cut(s)	304, 478
PspPPI	RGGWCCY	2 cut(s)	304, 478
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	4 cut(s)	87, 241, 400, 623
RsaNI	GTAC	4 cut(s)	86, 240, 399, 622
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	910
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	699, 792, 801
Sau3AI	GATC	2 cut(s)	533, 642
Sau96I	GGNCC	2 cut(s)	304, 478
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	2 cut(s)	404, 866
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	846, 910
SfaNI	GCATC	2 cut(s)	438, 685
SfcI	CTRYAG	2 cut(s)	210, 726
SinI	GGWCC	2 cut(s)	304, 478
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	8 cut(s)	41, 195, 263, 286, 629, 758, 824, 886
SspMI	CTAG	1 cut(s)	864
SstI	GAGCTC	1 cut(s)	910
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	90, 239, 878
TaiI	ACGT	3 cut(s)	132, 350, 586
TasI	AATT	8 cut(s)	41, 195, 263, 286, 629, 758, 824, 886
TatI	WGTACW	3 cut(s)	239, 398, 621
TfiI	GAWTC	4 cut(s)	98, 146, 434, 722
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	4 cut(s)	253, 429, 883, 900
TseFI	GTSAC	3 cut(s)	125, 495, 872
TseI	GCWGC	3 cut(s)	698, 791, 800
Tsp45I	GTSAC	3 cut(s)	125, 495, 872
TspDTI	ATGAA	3 cut(s)	426, 542, 867
TspGWI	ACGGA	2 cut(s)	139, 422
TspRI	CASTG	4 cut(s)	253, 429, 883, 900
VpaK11BI	GGWCC	2 cut(s)	304, 478
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	4 cut(s)	286, 629, 824, 886
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	1 cut(s)	864
ZraI	GACGTC	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.