Prupe.2G048000_v2.0.a1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0006843
Physical Location & Seq
Forward (+)
5505978 .. 5513596
7619 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G048000.1

Sequence Viewer

Length: 921 bp
ATGGATGCTAAAGCCAGGAATAAGGCATTGTTTCGTGCTAGATTGAATGCCCAGAAGAAGGAAAAGCGCATAGACTCTCCTCTTGTACGGTATAATGAATCTGACCAGCCCGTATGCAGGGTTTGTGACATCGCTCTGAAATCTGAATTTCAGTGGGAAGCACATCAAGCATCTCGTAAACATCATGAGGCAATAAATAATCTCAAAGCTACAGCAGCTGGACTAAACCGAGTCAACAACGCAAAAACTGAAGTCCGTCCAGAATTGTTGAAACCTGAACCTGAACATCCTCCGGAGTTGCATATCCCAAGACCTGAACGCTCTACAGAATTGCCTAGACCTCAAACGTCATCTGGGCTTCCTCCAGATTTTTTTGACAACCATGAGGCACAAAAACGAAATACTGGAACGGACTCTGTCACAGTGGCGGAGACTGATTCATACAAAAAGATTGAGACGAGAAAAACTGAGCCTGCCAGGGACCTTACACAGACATCATCACAGATTGCCAGTTCAGAAGCTAAGCAAATAAAGGGAGCTCTTCCTGAGGGCTTCTTTGATAACAAGGAAGCTGATTTATCTGCACGGGGAATAAAGCTTGTTAAGCCAGATGTCAAAGATGAGTACAAAGAATTCGAAAAGTTGATCCAAGAGGACTTGAAGGAGGTCGATAATAGGTTGGAAGAAGAAGAGATTGATGCCGCTGAGATGATAGAAGAGGCTGAATCAGTAGAGCAAAGGACATATCGGGAGAAAGTAGAATTGTTAAGAAAGAAGAAAATGGAGTTGAAGGCTGCGAGTGCTTCCAAGCGCAGAAGAGTTTCAGAGATTGTCAAAAAGGAGCCCAGTCATGATGAGTCATTAAGTGATAGTGACAGTGATGAGAATTTTGCAGTGGATTGGAGAGCTCAACATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

307

Amino Acids

35.06

Weight (kDa)

5.89

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 2 cut(s) 428, 702
AclWI GGATC 1 cut(s) 640
AcsI RAATTY 3 cut(s) 146, 632, 886
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 2 cut(s) 87, 626
AfiI CCNNNNNNNGG 2 cut(s) 58, 117
AgsI TTSAA 4 cut(s) 46, 271, 661, 790
AjnI CCWGG 2 cut(s) 14, 476
AluBI AGCT 7 cut(s) 209, 218, 521, 539, 572, 598, 908
AluI AGCT 7 cut(s) 209, 218, 521, 539, 572, 598, 908
Alw21I GWGCWC 2 cut(s) 541, 910
Alw26I GTCTC 2 cut(s) 425, 449
AlwI GGATC 1 cut(s) 640
AlwNI CAGNNNCTG 1 cut(s) 218
Aor13HI TCCGGA 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 215, 794
ApoI RAATTY 3 cut(s) 146, 632, 886
Asp700I GAANNNNTTC 1 cut(s) 820
AspLEI GCGC 2 cut(s) 69, 813
AspS9I GGNCC 1 cut(s) 481
AsuII TTCGAA 1 cut(s) 636
AvaII GGWCC 1 cut(s) 481
AxyI CCTNAGG 1 cut(s) 546
BanII GRGCYC 3 cut(s) 541, 846, 910
Bbv12I GWGCWC 2 cut(s) 541, 910
BbvI GCAGC 2 cut(s) 227, 781
BciT130I CCWGG 2 cut(s) 16, 478
BcoDI GTCTC 2 cut(s) 425, 449
BfaI CTAG 2 cut(s) 39, 336
BfmI CTRYAG 2 cut(s) 210, 324
BisI GCNGC 3 cut(s) 216, 702, 795
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 3 cut(s) 217, 703, 796
Bme1390I CCNGG 2 cut(s) 16, 478
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 2 cut(s) 482, 843
BmrFI CCNGG 2 cut(s) 16, 478
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 2 cut(s) 179, 688
BmuI ACTGGG 1 cut(s) 840
BpmI CTGGAG 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 636
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 117
Bse1I ACTGG 3 cut(s) 409, 510, 846
Bse21I CCTNAGG 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 292
BseBI CCWGG 2 cut(s) 16, 478
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 10, 286
BseLI CCNNNNNNNGG 2 cut(s) 58, 117
BseMII CTCAG 3 cut(s) 459, 537, 696
BseNI ACTGG 3 cut(s) 409, 510, 846
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 227, 781
BsgI GTGCAG 1 cut(s) 567
BsiHKAI GWGCWC 2 cut(s) 541, 910
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 2 cut(s) 58, 117
BsmAI GTCTC 2 cut(s) 425, 449
BsmBI CGTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 636
Bsp1286I GDGCHC 3 cut(s) 541, 846, 910
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 1 cut(s) 645
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 2 cut(s) 428, 702
BspCNI CTCAG 3 cut(s) 460, 538, 697
BspEI TCCGGA 1 cut(s) 292
BspHI TCATGA 2 cut(s) 184, 850
BspLI GGNNCC 2 cut(s) 482, 843
BspPI GGATC 1 cut(s) 640
BspQI GCTCTTC 1 cut(s) 546
BspT104I TTCGAA 1 cut(s) 636
BsrI ACTGG 3 cut(s) 409, 510, 846
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 1 cut(s) 645
Bst2UI CCWGG 2 cut(s) 16, 478
Bst4CI ACNGT 3 cut(s) 90, 424, 878
Bst6I CTCTTC 4 cut(s) 546, 684, 711, 811
BstBI TTCGAA 1 cut(s) 636
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 4 cut(s) 468, 522, 546, 705
BstF5I GGATG 2 cut(s) 10, 286
BstHHI GCGC 2 cut(s) 69, 813
BstKTI GATC 1 cut(s) 648
BstMAI GTCTC 2 cut(s) 425, 449
BstMBI GATC 1 cut(s) 645
BstMWI GCNNNNNNNGC 4 cut(s) 167, 215, 604, 800
BstNI CCWGG 2 cut(s) 16, 478
BstSCI CCNGG 2 cut(s) 14, 476
BstSFI CTRYAG 2 cut(s) 210, 324
BstV1I GCAGC 2 cut(s) 227, 781
Bsu36I CCTNAGG 1 cut(s) 546
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 2 cut(s) 10, 286
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 4 cut(s) 158, 429, 883, 900
Cac8I GCNNGC 1 cut(s) 474
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 2 cut(s) 184, 850
CfoI GCGC 2 cut(s) 69, 813
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 86, 625
CviAII CATG 3 cut(s) 185, 383, 851
CviQI GTAC 2 cut(s) 86, 625
DdeI CTNAG 4 cut(s) 468, 522, 546, 705
DpnI GATC 1 cut(s) 647
DpnII GATC 1 cut(s) 645
Eam1104I CTCTTC 4 cut(s) 546, 684, 711, 811
EarI CTCTTC 4 cut(s) 546, 684, 711, 811
EciI GGCGGA 1 cut(s) 443
Ecl136II GAGCTC 2 cut(s) 539, 908
Eco24I GRGCYC 3 cut(s) 541, 846, 910
Eco47I GGWCC 1 cut(s) 481
Eco53kI GAGCTC 2 cut(s) 539, 908
Eco57I CTGAAG 1 cut(s) 270
Eco81I CCTNAGG 1 cut(s) 546
EcoICRI GAGCTC 2 cut(s) 539, 908
EcoO109I RGGNCCY 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 632
EcoRII CCWGG 2 cut(s) 14, 476
EcoT38I GRGCYC 3 cut(s) 541, 846, 910
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 3 cut(s) 188, 386, 854
FaiI YATR 9 cut(s) 71, 93, 115, 186, 303, 384, 442, 745, 852
FaqI GGGAC 1 cut(s) 494
FatI CATG 3 cut(s) 184, 382, 850
Fnu4HI GCNGC 3 cut(s) 216, 702, 795
FokI GGATG 2 cut(s) 17, 273
FriOI GRGCYC 3 cut(s) 541, 846, 910
Fsp4HI GCNGC 3 cut(s) 216, 702, 795
FspBI CTAG 2 cut(s) 39, 336
GlaI GCGC 2 cut(s) 68, 812
GluI GCNGC 3 cut(s) 216, 702, 795
GsuI CTGGAG 1 cut(s) 348
HapII CCGG 1 cut(s) 293
HhaI GCGC 2 cut(s) 69, 813
Hin1II CATG 3 cut(s) 188, 386, 854
Hin6I GCGC 2 cut(s) 67, 811
HinP1I GCGC 2 cut(s) 67, 811
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 7 cut(s) 74, 98, 231, 413, 437, 725, 857
HpaII CCGG 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 179, 235
Hpy188I TCNGA 5 cut(s) 103, 138, 145, 517, 826
Hpy188III TCNNGA 7 cut(s) 185, 260, 293, 365, 545, 749, 851
Hpy8I GTNNAC 2 cut(s) 179, 235
HpyAV CCTTC 3 cut(s) 52, 655, 784
HpyCH4III ACNGT 3 cut(s) 90, 424, 878
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 4 cut(s) 117, 301, 584, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 215, 604, 800
HpyF3I CTNAG 4 cut(s) 468, 522, 546, 705
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 3 cut(s) 188, 386, 854
HspAI GCGC 2 cut(s) 67, 811
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 645
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 2 cut(s) 536, 841
Lsp1109I GCAGC 2 cut(s) 227, 781
LweI GCATC 2 cut(s) 179, 688
MaeI CTAG 2 cut(s) 39, 336
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 3 cut(s) 125, 418, 872
MalI GATC 1 cut(s) 647
MboI GATC 1 cut(s) 645
MboII GAAGA 8 cut(s) 67, 533, 695, 698, 701, 728, 787, 828
MhlI GDGCHC 3 cut(s) 541, 846, 910
MluCI AATT 6 cut(s) 146, 263, 329, 632, 761, 886
MlyI GAGTC 4 cut(s) 68, 240, 407, 866
MmeI TCCRAC 1 cut(s) 660
MroI TCCGGA 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 820
MseI TTAA 3 cut(s) 603, 767, 863
MspA1I CMGCKG 2 cut(s) 218, 704
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 16, 478
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 2 cut(s) 16, 478
MwoI GCNNNNNNNGC 4 cut(s) 167, 215, 604, 800
NdeII GATC 1 cut(s) 645
NlaIII CATG 3 cut(s) 188, 386, 854
NlaIV GGNNCC 2 cut(s) 482, 843
NmuCI GTSAC 3 cut(s) 125, 418, 872
NspV TTCGAA 1 cut(s) 636
PagI TCATGA 2 cut(s) 184, 850
PciSI GCTCTTC 1 cut(s) 546
PctI GAATGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 820
PfeI GAWTC 3 cut(s) 98, 437, 725
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 217, 703, 796
PleI GAGTC 4 cut(s) 68, 239, 407, 865
PpsI GAGTC 4 cut(s) 68, 239, 407, 865
PpuMI RGGWCCY 1 cut(s) 481
Psp124BI GAGCTC 2 cut(s) 541, 910
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 14, 476
PspGI CCWGG 2 cut(s) 14, 476
PspN4I GGNNCC 2 cut(s) 482, 843
PspPI GGNCC 1 cut(s) 481
PspPPI RGGWCCY 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 416
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 87, 626
RsaNI GTAC 2 cut(s) 86, 625
SacI GAGCTC 2 cut(s) 541, 910
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 3 cut(s) 603, 767, 863
SatI GCNGC 3 cut(s) 216, 702, 795
Sau3AI GATC 1 cut(s) 645
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 4 cut(s) 68, 240, 407, 866
ScrFI CCNGG 2 cut(s) 16, 478
SduI GDGCHC 3 cut(s) 541, 846, 910
SfaNI GCATC 2 cut(s) 179, 688
SfcI CTRYAG 2 cut(s) 210, 324
SfuI TTCGAA 1 cut(s) 636
SinI GGWCC 1 cut(s) 481
Sse9I AATT 6 cut(s) 146, 263, 329, 632, 761, 886
SsiI CCGC 2 cut(s) 428, 702
SspMI CTAG 2 cut(s) 39, 336
SstI GAGCTC 2 cut(s) 541, 910
StyD4I CCNGG 2 cut(s) 14, 476
TaaI ACNGT 3 cut(s) 90, 424, 878
TaiI ACGT 1 cut(s) 350
TaqI TCGA 2 cut(s) 636, 669
TasI AATT 6 cut(s) 146, 263, 329, 632, 761, 886
TatI WGTACW 1 cut(s) 624
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 3 cut(s) 98, 437, 725
Tru1I TTAA 3 cut(s) 603, 767, 863
Tru9I TTAA 3 cut(s) 603, 767, 863
TscAI CASTG 4 cut(s) 158, 429, 883, 900
TseFI GTSAC 3 cut(s) 125, 418, 872
TseI GCWGC 2 cut(s) 215, 794
Tsp45I GTSAC 3 cut(s) 125, 418, 872
TspDTI ATGAA 2 cut(s) 111, 429
TspGWI ACGGA 2 cut(s) 245, 425
TspRI CASTG 4 cut(s) 158, 429, 883, 900
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 3 cut(s) 146, 632, 886
XmnI GAANNNNTTC 1 cut(s) 820
XspI CTAG 2 cut(s) 39, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.