Belongs to the helicase family. Dicer subfamily
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 25 - 190 | 5.3e-13 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 26 - 192 | 4.2e-15 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 376 - 489 | 1.3e-16 | Helicase conserved C-terminal domain |
| Dicer_dimer | PF03368 | 559 - 638 | 2e-19 | Dicer dimerisation domain |
| PAZ | PF02170 | 828 - 957 | 3.3e-15 | PAZ domain |
| Ribonuclease_3 | PF00636 | 995 - 1112 | 8.8e-15 | Ribonuclease III domain |
| Ribonucleas_3_3 | PF14622 | 1162 - 1300 | 4.4e-16 | Ribonuclease-III-like |
| Ribonuclease_3 | PF00636 | 1185 - 1296 | 4.2e-22 | Ribonuclease III domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1085, 3717 |
| AccB1I | GGYRCC | 1 cut(s) | 2102 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2540, 3180 |
| AccI | GTMKAC | 2 cut(s) | 2550, 3384 |
| AccII | CGCG | 4 cut(s) | 404, 1566, 3156, 3869 |
| AccIII | TCCGGA | 1 cut(s) | 1332 |
| AciI | CCGC | 7 cut(s) | 196, 1088, 1506, 1925, 3154, 3556, 3695 |
| AclWI | GGATC | 5 cut(s) | 825, 1587, 1767, 2394, 3397 |
| AcoI | YGGCCR | 3 cut(s) | 2730, 3291, 4107 |
| AcuI | CTGAAG | 5 cut(s) | 290, 1698, 1839, 2915, 3125 |
| AdeI | CACNNNGTG | 1 cut(s) | 2278 |
| AfaI | GTAC | 8 cut(s) | 1262, 1648, 1724, 2167, 2500, 2511, 2636, 3728 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 2540, 3180, 3694, 3929 |
| AflII | CTTAAG | 1 cut(s) | 4145 |
| AflIII | ACRYGT | 1 cut(s) | 402 |
| AhlI | ACTAGT | 1 cut(s) | 2344 |
| AjnI | CCWGG | 4 cut(s) | 1404, 3190, 3634, 4155 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2112, 2144, 3297, 3329 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1617, 1649 |
| Alw21I | GWGCWC | 1 cut(s) | 1891 |
| AlwI | GGATC | 5 cut(s) | 825, 1587, 1767, 2394, 3397 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3665, 3953 |
| Ama87I | CYCGRG | 2 cut(s) | 1946, 3236 |
| Aor13HI | TCCGGA | 1 cut(s) | 1332 |
| AoxI | GGCC | 6 cut(s) | 912, 990, 2730, 3291, 4089, 4107 |
| ApeKI | GCWGC | 4 cut(s) | 923, 1972, 3206, 3347 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2750, 2782 |
| AseI | ATTAAT | 2 cut(s) | 1532, 3311 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2682, 3097 |
| AspLEI | GCGC | 2 cut(s) | 1566, 3869 |
| AspS9I | GGNCC | 2 cut(s) | 913, 2221 |
| AvaI | CYCGRG | 2 cut(s) | 1946, 3236 |
| AvaII | GGWCC | 1 cut(s) | 2221 |
| BalI | TGGCCA | 2 cut(s) | 2732, 4109 |
| BanI | GGYRCC | 1 cut(s) | 2102 |
| BanII | GRGCYC | 1 cut(s) | 1891 |
| BauI | CACGAG | 1 cut(s) | 1455 |
| BbsI | GAAGAC | 6 cut(s) | 118, 214, 1332, 2701, 3062, 3777 |
| Bbv12I | GWGCWC | 1 cut(s) | 1891 |
| BbvI | GCAGC | 4 cut(s) | 910, 1984, 3218, 3359 |
| BceAI | ACGGC | 1 cut(s) | 2503 |
| BciT130I | CCWGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| BciVI | GTATCC | 1 cut(s) | 2537 |
| BclI | TGATCA | 4 cut(s) | 40, 435, 1897, 2394 |
| BcuI | ACTAGT | 1 cut(s) | 2344 |
| BfmI | CTRYAG | 3 cut(s) | 843, 2230, 3204 |
| BfrI | CTTAAG | 1 cut(s) | 4145 |
| BfuAI | ACCTGC | 2 cut(s) | 1085, 3717 |
| BfuI | GTATCC | 1 cut(s) | 2537 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 920, 3692 |
| BglII | AGATCT | 1 cut(s) | 1510 |
| BisI | GCNGC | 4 cut(s) | 924, 1973, 3207, 3348 |
| BlsI | GCNGC | 4 cut(s) | 925, 1974, 3208, 3349 |
| BmcAI | AGTACT | 3 cut(s) | 1648, 1724, 2636 |
| Bme1390I | CCNGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| Bme18I | GGWCC | 1 cut(s) | 2221 |
| BmeT110I | CYCGRG | 2 cut(s) | 1946, 3236 |
| BmgT120I | GGNCC | 2 cut(s) | 913, 2221 |
| BmiI | GGNNCC | 4 cut(s) | 231, 811, 2104, 3189 |
| BmrFI | CCNGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| BmrI | ACTGGG | 2 cut(s) | 1793, 1999 |
| BmuI | ACTGGG | 2 cut(s) | 1793, 1999 |
| BpiI | GAAGAC | 6 cut(s) | 118, 214, 1332, 2701, 3062, 3777 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1985, 2017, 3309, 3341, 4060, 4092 |
| BpmI | CTGGAG | 2 cut(s) | 1671, 3930 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2784, 4059 |
| BpuEI | CTTGAG | 6 cut(s) | 116, 219, 448, 1032, 1657, 1687 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3811 |
| BsaI | GGTCTC | 2 cut(s) | 26, 1103 |
| BsaJI | CCNNGG | 8 cut(s) | 6, 548, 805, 813, 993, 1152, 3568, 3634 |
| BsaWI | WCCGGW | 2 cut(s) | 1332, 2145 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1644, 1674, 3449, 3479 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 2540, 3180, 3694, 3929 |
| Bse1I | ACTGG | 7 cut(s) | 142, 614, 942, 1253, 1654, 1799, 2005 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3811 |
| BseAI | TCCGGA | 1 cut(s) | 1332 |
| BseBI | CCWGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| BseDI | CCNNGG | 8 cut(s) | 6, 548, 805, 813, 993, 1152, 3568, 3634 |
| BseJI | GATNNNNATC | 1 cut(s) | 3811 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 2540, 3180, 3694, 3929 |
| BseNI | ACTGG | 7 cut(s) | 142, 614, 942, 1253, 1654, 1799, 2005 |
| BseRI | GAGGAG | 3 cut(s) | 48, 817, 1391 |
| BseXI | GCAGC | 4 cut(s) | 910, 1984, 3218, 3359 |
| BseYI | CCCAGC | 1 cut(s) | 683 |
| BsgI | GTGCAG | 3 cut(s) | 1859, 2539, 3695 |
| Bsh1236I | CGCG | 4 cut(s) | 404, 1566, 3156, 3869 |
| BshFI | GGCC | 6 cut(s) | 914, 992, 2732, 3293, 4091, 4109 |
| BshNI | GGYRCC | 1 cut(s) | 2102 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1891 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1946, 3236 |
| BsiSI | CCGG | 3 cut(s) | 1333, 2021, 2146 |
| BslFI | GGGAC | 4 cut(s) | 677, 729, 2791, 3616 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 2540, 3180, 3694, 3929 |
| BsmFI | GGGAC | 4 cut(s) | 677, 729, 2791, 3616 |
| BsmI | GAATGC | 4 cut(s) | 1476, 1566, 1866, 2469 |
| BsnI | GGCC | 6 cut(s) | 914, 992, 2732, 3293, 4091, 4109 |
| Bso31I | GGTCTC | 2 cut(s) | 26, 1103 |
| BsoBI | CYCGRG | 2 cut(s) | 1946, 3236 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1891 |
| Bsp13I | TCCGGA | 1 cut(s) | 1332 |
| Bsp19I | CCATGG | 1 cut(s) | 6 |
| BspACI | CCGC | 7 cut(s) | 196, 1088, 1506, 1925, 3154, 3556, 3695 |
| BspANI | GGCC | 6 cut(s) | 914, 992, 2732, 3293, 4091, 4109 |
| BspEI | TCCGGA | 1 cut(s) | 1332 |
| BspFNI | CGCG | 4 cut(s) | 404, 1566, 3156, 3869 |
| BspHI | TCATGA | 4 cut(s) | 498, 622, 2419, 3360 |
| BspLI | GGNNCC | 4 cut(s) | 231, 811, 2104, 3189 |
| BspMAI | CTGCAG | 1 cut(s) | 3208 |
| BspMI | ACCTGC | 2 cut(s) | 1085, 3717 |
| BspPI | GGATC | 5 cut(s) | 825, 1587, 1767, 2394, 3397 |
| BspT107I | GGYRCC | 1 cut(s) | 2102 |
| BspTI | CTTAAG | 1 cut(s) | 4145 |
| BspTNI | GGTCTC | 2 cut(s) | 26, 1103 |
| BsrI | ACTGG | 7 cut(s) | 142, 614, 942, 1253, 1654, 1799, 2005 |
| BssECI | CCNNGG | 8 cut(s) | 6, 548, 805, 813, 993, 1152, 3568, 3634 |
| BssSI | CACGAG | 1 cut(s) | 1455 |
| BssT1I | CCWWGG | 5 cut(s) | 6, 805, 813, 993, 1152 |
| Bst2BI | CACGAG | 1 cut(s) | 1455 |
| Bst2UI | CCWGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| Bst6I | CTCTTC | 8 cut(s) | 845, 1140, 1563, 1611, 1637, 2211, 2688, 3498 |
| BstAFI | CTTAAG | 1 cut(s) | 4145 |
| BstC8I | GCNNGC | 8 cut(s) | 200, 258, 681, 757, 912, 1464, 1864, 3865 |
| BstDSI | CCRYGG | 2 cut(s) | 6, 548 |
| BstFNI | CGCG | 4 cut(s) | 404, 1566, 3156, 3869 |
| BstHHI | GCGC | 2 cut(s) | 1566, 3869 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 920, 3692, 3701, 4082 |
| BstNI | CCWGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| BstNSI | RCATGY | 1 cut(s) | 3655 |
| BstSCI | CCNGG | 4 cut(s) | 1404, 3190, 3634, 4155 |
| BstSFI | CTRYAG | 3 cut(s) | 843, 2230, 3204 |
| BstUI | CGCG | 4 cut(s) | 404, 1566, 3156, 3869 |
| BstV1I | GCAGC | 4 cut(s) | 910, 1984, 3218, 3359 |
| BstV2I | GAAGAC | 6 cut(s) | 118, 214, 1332, 2701, 3062, 3777 |
| BstX2I | RGATCY | 4 cut(s) | 817, 1510, 2399, 3402 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1207, 4117 |
| BstYI | RGATCY | 4 cut(s) | 817, 1510, 2399, 3402 |
| BsuI | GTATCC | 1 cut(s) | 2537 |
| BsuRI | GGCC | 6 cut(s) | 914, 992, 2732, 3293, 4091, 4109 |
| BtgI | CCRYGG | 2 cut(s) | 6, 548 |
| BtgZI | GCGATG | 3 cut(s) | 35, 779, 3171 |
| BtsIMutI | CAGTG | 4 cut(s) | 36, 2281, 3046, 3775 |
| BveI | ACCTGC | 2 cut(s) | 1085, 3717 |
| Cac8I | GCNNGC | 8 cut(s) | 200, 258, 681, 757, 912, 1464, 1864, 3865 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3665, 3953 |
| CciI | TCATGA | 4 cut(s) | 498, 622, 2419, 3360 |
| CfoI | GCGC | 2 cut(s) | 1566, 3869 |
| Cfr13I | GGNCC | 2 cut(s) | 913, 2221 |
| CseI | GACGC | 2 cut(s) | 410, 1666 |
| CsiI | ACCWGGT | 1 cut(s) | 1404 |
| Csp6I | GTAC | 8 cut(s) | 1261, 1647, 1723, 2166, 2499, 2510, 2635, 3727 |
| CviQI | GTAC | 8 cut(s) | 1261, 1647, 1723, 2166, 2499, 2510, 2635, 3727 |
| DraI | TTTAAA | 2 cut(s) | 1110, 2085 |
| DraIII | CACNNNGTG | 1 cut(s) | 2278 |
| EaeI | YGGCCR | 3 cut(s) | 2730, 3291, 4107 |
| Eam1104I | CTCTTC | 8 cut(s) | 845, 1140, 1563, 1611, 1637, 2211, 2688, 3498 |
| EarI | CTCTTC | 8 cut(s) | 845, 1140, 1563, 1611, 1637, 2211, 2688, 3498 |
| EciI | GGCGGA | 1 cut(s) | 1940 |
| Ecl136II | GAGCTC | 1 cut(s) | 1889 |
| Eco130I | CCWWGG | 5 cut(s) | 6, 805, 813, 993, 1152 |
| Eco147I | AGGCCT | 1 cut(s) | 4091 |
| Eco24I | GRGCYC | 1 cut(s) | 1891 |
| Eco31I | GGTCTC | 2 cut(s) | 26, 1103 |
| Eco47I | GGWCC | 1 cut(s) | 2221 |
| Eco53kI | GAGCTC | 1 cut(s) | 1889 |
| Eco57I | CTGAAG | 5 cut(s) | 290, 1698, 1839, 2915, 3125 |
| Eco88I | CYCGRG | 2 cut(s) | 1946, 3236 |
| EcoICRI | GAGCTC | 1 cut(s) | 1889 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2221 |
| EcoRI | GAATTC | 1 cut(s) | 643 |
| EcoRII | CCWGG | 4 cut(s) | 1404, 3190, 3634, 4155 |
| EcoT14I | CCWWGG | 5 cut(s) | 6, 805, 813, 993, 1152 |
| EcoT22I | ATGCAT | 2 cut(s) | 279, 2521 |
| EcoT38I | GRGCYC | 1 cut(s) | 1891 |
| ErhI | CCWWGG | 5 cut(s) | 6, 805, 813, 993, 1152 |
| FaqI | GGGAC | 4 cut(s) | 677, 729, 2791, 3616 |
| FbaI | TGATCA | 4 cut(s) | 40, 435, 1897, 2394 |
| FblI | GTMKAC | 2 cut(s) | 2550, 3384 |
| Fnu4HI | GCNGC | 4 cut(s) | 924, 1973, 3207, 3348 |
| FriOI | GRGCYC | 1 cut(s) | 1891 |
| Fsp4HI | GCNGC | 4 cut(s) | 924, 1973, 3207, 3348 |
| GlaI | GCGC | 2 cut(s) | 1565, 3868 |
| GluI | GCNGC | 4 cut(s) | 924, 1973, 3207, 3348 |
| GsaI | CCCAGC | 1 cut(s) | 687 |
| GsuI | CTGGAG | 2 cut(s) | 1671, 3930 |
| HaeIII | GGCC | 6 cut(s) | 914, 992, 2732, 3293, 4091, 4109 |
| HapII | CCGG | 3 cut(s) | 1333, 2021, 2146 |
| HgaI | GACGC | 2 cut(s) | 410, 1666 |
| HhaI | GCGC | 2 cut(s) | 1566, 3869 |
| Hin6I | GCGC | 2 cut(s) | 1564, 3867 |
| HinP1I | GCGC | 2 cut(s) | 1564, 3867 |
| HincII | GTYRAC | 6 cut(s) | 1348, 1518, 3385, 3670, 3880, 3981 |
| HindII | GTYRAC | 6 cut(s) | 1348, 1518, 3385, 3670, 3880, 3981 |
| HindIII | AAGCTT | 5 cut(s) | 709, 757, 1860, 2140, 3434 |
| HpaI | GTTAAC | 3 cut(s) | 1348, 1518, 3670 |
| HpaII | CCGG | 3 cut(s) | 1333, 2021, 2146 |
| Hpy99I | CGWCG | 1 cut(s) | 404 |
| HpyAV | CCTTC | 5 cut(s) | 213, 913, 1722, 1793, 2737 |
| HpyCH4IV | ACGT | 4 cut(s) | 1263, 2547, 2708, 3255 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 920, 3692, 3701, 4082 |
| HpySE526I | ACGT | 4 cut(s) | 1263, 2547, 2708, 3255 |
| HspAI | GCGC | 2 cut(s) | 1564, 3867 |
| Kpn2I | TCCGGA | 1 cut(s) | 1332 |
| Ksp22I | TGATCA | 4 cut(s) | 40, 435, 1897, 2394 |
| KspAI | GTTAAC | 3 cut(s) | 1348, 1518, 3670 |
| LmnI | GCTCC | 5 cut(s) | 1154, 1652, 1886, 2195, 3317 |
| Lsp1109I | GCAGC | 4 cut(s) | 910, 1984, 3218, 3359 |
| MabI | ACCWGGT | 1 cut(s) | 1404 |
| MaeII | ACGT | 4 cut(s) | 1263, 2547, 2708, 3255 |
| MaeIII | GTNAC | 7 cut(s) | 247, 1660, 1979, 2176, 3002, 3572, 3887 |
| MflI | RGATCY | 4 cut(s) | 817, 1510, 2399, 3402 |
| MhlI | GDGCHC | 1 cut(s) | 1891 |
| MlsI | TGGCCA | 2 cut(s) | 2732, 4109 |
| MluI | ACGCGT | 1 cut(s) | 402 |
| MluNI | TGGCCA | 2 cut(s) | 2732, 4109 |
| MmeI | TCCRAC | 8 cut(s) | 1455, 1864, 2130, 2948, 3067, 3161, 3352, 3540 |
| Mox20I | TGGCCA | 2 cut(s) | 2732, 4109 |
| Mph1103I | ATGCAT | 2 cut(s) | 279, 2521 |
| MroI | TCCGGA | 1 cut(s) | 1332 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2682, 3097 |
| MscI | TGGCCA | 2 cut(s) | 2732, 4109 |
| MslI | CAYNNNNRTG | 5 cut(s) | 317, 486, 1178, 1919, 2364 |
| Msp20I | TGGCCA | 2 cut(s) | 2732, 4109 |
| MspA1I | CMGCKG | 1 cut(s) | 3556 |
| MspCI | CTTAAG | 1 cut(s) | 4145 |
| MspI | CCGG | 3 cut(s) | 1333, 2021, 2146 |
| MspR9I | CCNGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| Mva1269I | GAATGC | 4 cut(s) | 1476, 1566, 1866, 2469 |
| MvaI | CCWGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| MvnI | CGCG | 4 cut(s) | 404, 1566, 3156, 3869 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 920, 3692, 3701, 4082 |
| NcoI | CCATGG | 1 cut(s) | 6 |
| NlaIV | GGNNCC | 4 cut(s) | 231, 811, 2104, 3189 |
| NmuCI | GTSAC | 4 cut(s) | 247, 2176, 3002, 3572 |
| NsiI | ATGCAT | 2 cut(s) | 279, 2521 |
| NspI | RCATGY | 1 cut(s) | 3655 |
| PaeR7I | CTCGAG | 1 cut(s) | 1946 |
| PagI | TCATGA | 4 cut(s) | 498, 622, 2419, 3360 |
| PceI | AGGCCT | 1 cut(s) | 4091 |
| PctI | GAATGC | 4 cut(s) | 1476, 1566, 1866, 2469 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2682, 3097 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2540, 3180 |
| PkrI | GCNGC | 4 cut(s) | 925, 1974, 3208, 3349 |
| PpuMI | RGGWCCY | 1 cut(s) | 2221 |
| PshBI | ATTAAT | 2 cut(s) | 1532, 3311 |
| Psp124BI | GAGCTC | 1 cut(s) | 1891 |
| Psp5II | RGGWCCY | 1 cut(s) | 2221 |
| Psp6I | CCWGG | 4 cut(s) | 1404, 3190, 3634, 4155 |
| PspFI | CCCAGC | 1 cut(s) | 683 |
| PspGI | CCWGG | 4 cut(s) | 1404, 3190, 3634, 4155 |
| PspN4I | GGNNCC | 4 cut(s) | 231, 811, 2104, 3189 |
| PspPI | GGNCC | 2 cut(s) | 913, 2221 |
| PspPPI | RGGWCCY | 1 cut(s) | 2221 |
| PstI | CTGCAG | 1 cut(s) | 3208 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3665, 3953 |
| PsuI | RGATCY | 4 cut(s) | 817, 1510, 2399, 3402 |
| RsaI | GTAC | 8 cut(s) | 1262, 1648, 1724, 2167, 2500, 2511, 2636, 3728 |
| RsaNI | GTAC | 8 cut(s) | 1261, 1647, 1723, 2166, 2499, 2510, 2635, 3727 |
| RseI | CAYNNNNRTG | 5 cut(s) | 317, 486, 1178, 1919, 2364 |
| SacI | GAGCTC | 1 cut(s) | 1891 |
| SalI | GTCGAC | 1 cut(s) | 3383 |
| SatI | GCNGC | 4 cut(s) | 924, 1973, 3207, 3348 |
| Sau96I | GGNCC | 2 cut(s) | 913, 2221 |
| ScaI | AGTACT | 3 cut(s) | 1648, 1724, 2636 |
| ScrFI | CCNGG | 4 cut(s) | 1406, 3192, 3636, 4157 |
| SduI | GDGCHC | 1 cut(s) | 1891 |
| SexAI | ACCWGGT | 1 cut(s) | 1404 |
| SfcI | CTRYAG | 3 cut(s) | 843, 2230, 3204 |
| Sfr274I | CTCGAG | 1 cut(s) | 1946 |
| SinI | GGWCC | 1 cut(s) | 2221 |
| SlaI | CTCGAG | 1 cut(s) | 1946 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 317, 486, 1178, 1919, 2364 |
| SmlI | CTYRAG | 8 cut(s) | 95, 234, 427, 1047, 1672, 1702, 1946, 4145 |
| SmoI | CTYRAG | 8 cut(s) | 95, 234, 427, 1047, 1672, 1702, 1946, 4145 |
| SpeI | ACTAGT | 1 cut(s) | 2344 |
| SseBI | AGGCCT | 1 cut(s) | 4091 |
| SsiI | CCGC | 7 cut(s) | 196, 1088, 1506, 1925, 3154, 3556, 3695 |
| SspI | AATATT | 1 cut(s) | 2920 |
| SstI | GAGCTC | 1 cut(s) | 1891 |
| StuI | AGGCCT | 1 cut(s) | 4091 |
| StyD4I | CCNGG | 4 cut(s) | 1404, 3190, 3634, 4155 |
| StyI | CCWWGG | 5 cut(s) | 6, 805, 813, 993, 1152 |
| TaiI | ACGT | 4 cut(s) | 1266, 2550, 2711, 3258 |
| TaqI | TCGA | 8 cut(s) | 399, 630, 1528, 1641, 1947, 3384, 4008, 4032 |
| TatI | WGTACW | 4 cut(s) | 1646, 1722, 2498, 2634 |
| TscAI | CASTG | 4 cut(s) | 43, 2281, 3053, 3775 |
| TseFI | GTSAC | 4 cut(s) | 247, 2176, 3002, 3572 |
| TseI | GCWGC | 4 cut(s) | 923, 1972, 3206, 3347 |
| Tsp45I | GTSAC | 4 cut(s) | 247, 2176, 3002, 3572 |
| TspGWI | ACGGA | 4 cut(s) | 565, 1625, 2392, 2598 |
| TspRI | CASTG | 4 cut(s) | 43, 2281, 3053, 3775 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2540, 3180 |
| Vha464I | CTTAAG | 1 cut(s) | 4145 |
| VpaK11BI | GGWCC | 1 cut(s) | 2221 |
| VspI | ATTAAT | 2 cut(s) | 1532, 3311 |
| XbaI | TCTAGA | 4 cut(s) | 1372, 1384, 3242, 3758 |
| XceI | RCATGY | 1 cut(s) | 3655 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2935, 3181 |
| XhoI | CTCGAG | 1 cut(s) | 1946 |
| XmiI | GTMKAC | 2 cut(s) | 2550, 3384 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2682, 3097 |
| ZrmI | AGTACT | 3 cut(s) | 1648, 1724, 2636 |
| Zsp2I | ATGCAT | 2 cut(s) | 279, 2521 |