Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001073

Physical Location & Seq

Genomic Coordinates Forward (+)

152041 .. 161520

Gene Structure 9480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00200.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4194 bp

ATGGAACCATCTCGGGTGATGGTTGAGGACCAAACCCAACAATCTGCCGAACCTCTCCCATTCGCCAGAAGTTACCAGCTAGAAGCTTTAGAAGCAGCAATCAAGCGGAACACCATAGTGTTCTTGGAGACTGGCTCCGGAAAAACATTGATTGCCATCATGCTTCTTCGGCGCTATTCCTATTTGCTCCGCAAACCATCTCCCTTCGTTGCTGTCTTCTTAGTTCCCCAAGTCGTCTTGGTTCAACAGCAAGCTGACGCAATTAAAATGCACACCGACCTAAAGGTTGGTATGTATTGGGGAGCTATGGGAGTAGACGGTTGGGATGCTAAAATGTGGAAGCAAAAAATAGAAGAATTTGAGGTGCTTGTGATGACTCCAGCAATATTGCTGAATAATCTGTGCCATAGCTTCTTTAAGCTAAGCATGATAAAGGTTTTAATCCTGGATGAATGCCATCATGCCAGGGGTAAACACCCATATGCTTGTATAATGAAGGACTTCTTTCATCGTCAGTTACAGTCTGGCCAATCTGAACTTCCAAAAATATTTGGAATGACTGCTTCCCCCATCAAATCAAAAGGTGGAAATCCAGAGTTAAACTATTGGAAAACAATCGAGGAACTTGAGACACTGATGAATTCAAAGGTGTACACATGTGTTGATGAATCTGTGCTTTCTGAGTTTATACCAACTTCAACGCCCAAGTTTAGAACGTACAGACGTGGGGAGATTCCCTCTGCATTGTATACATGCTTAACAAATCAGTTGATAGGTTTGAAAGAAAAGCATGAATTGTCGGCAAAAAGTTTGGACCTCAGTGAATCTTCACAATCCATAAGGAAAAGGCTGATGAAATTTTTTTCAGCTTTAACATTTTGTTTGGAAGAACTTGGTGTTTGGCTTGCTTCAAAGGCTGCGTGGTTCTTTTCAAACAATATTGACTTCTTTTCAAACGATATTGACTTCTTTACTTGGGAGAAGCTAGATGTGATGGGTGAGAGAATTGTTAGAACTTTCAGTCTAGAAGCCTACAAATCATTTGCATGTCTTCTTCCATCTGATCCAGAGTGGACCATTGCTGATGATCTGATAGGCAATGTGAACAAGGGGTTTCTTACTTCCAAAGTCGTTTGTCTCATTCAGTTGCTTCTTGAATACAGGACCTTAAAGAATTTGAGATGTATAGTTTTTGTTGAACGGGTCATCACAGCAGTTGTCCTAGAATATTTATTGAATGAGATTCTTTCTAAACACAATGATTGGAAGTCAAAGTACATTGCTGGAAATAACAGCGGGATGCAATCCCAAACGAGGAAAAAACACAACGAGATTGTTGAAGAATTTCGTAACGGCATGGTGAACATCATTGTTGCTACATCGATTCTTGAAGAGGGTTTAGACGTTCAAAGCTGCAATTTGGTTATCAGATTTGACCCTTCTTCTACTGTGTGTAGTTTCATACAGTCTAGAGGCCGTGCTAGAATGCAGAATTCTGATTATGTATTGATGGTGGAAAGTGGGGATGATAAAACATATTCTCGATTACAGAATTATCTTGCCAGTGGAGACATAATGAGAAAGGAGGCCCTACGACATTCTTCTCTTCCCTGTAGATTGCTGGAAATCGATTTACAGGATGATGACTTCTACAGGGTTGAAAGCACTGGAGCAAGCTTGACCCTGGAGTCTTCTATTGGTTTGATGTACTTCTATTGCTCTAGGCTCCCTTCTGATGGATATTTTAAACCTGCTCCAAGGTGGGATGAAGAGACCCACACTCTATATCTTCCCAAGAGCTGTCCAATACCTTATGTCAGGGTAGAAGGTAGTGGTAAAATTCTGAAGAAGATTGCATGCTTTGAAGCTTGCAAGCAACTTCACAATATTGGTGCTTTAACGGATAACCTTGTTCCAGATATTGTTATGGAAGAAGCCCCACAAGAGTCTGAGCATGCGCCTTATGATGAGGAGCAATCCAGTTATGTCCCAATTGAATTGGTCAAACCTTCGTCAGCTGGTACTAGCATTTTGTATCATTGCTACTTAATTGAGCTGGATCAGAAATTTGGATATGAGATTCCGGTTAATGATTTTGTGCTTGGCGTGAGGAGTCAGCTTGATAGAGATATTTCAAATTTGCATTTTGAGTTGGAATTTGGCAGGGGTTCTTTATCAGTGAACTTTAAATATGCTGGAGAGATGCATCTTGATTCAGAGCAGGTACTCCTCTGTAGAAGATTCCAGATTACAATATTCCGAATTCTAATGGATCACAACTTGGATAAGTTGAAAGAAGCTTTGGATGGCCTTTGTTCGGGAGAAAATCTTGGGTTTGATTATTTGATGCTCCCAGGGATCATCATCCATAAGAGACCTTCCATGATTGATTGGAAATGCGTCACATCTGTGTTATATTCTTGTGAAGAAAATAGTAAGGAACACATAGATTGTTCCCTACCCCGTGTTTTACATACCAAAAATGGCGCTGTTTGCACATGCATGATTCGGAACTCCGTGGTGTGCACCCCTCATAATGGTAGCTTGTATTGCATCACCGGTCTGTTGGATAACTTGAATGGAAACTCACTTCTGCAACTCAGTGATGGCAGAGTTCTTACTTACAAGAATTACTATGAAGCACGGCATGGTATCCACTTGCGTTTTGACAAACAGTTGTTGCTGAAAGGAAGACGCATTTTCCACATGAAAAAGCATGTTCAGAGGGGCGGGCAACATACAGAAAAAGAATCAAGCAATACATCTGTCGAGTTGCCTCCTGAGCTTTGTAATATAATCATGTCACCCATATCAATCAGCTGTTTATACACATTTTCATTTGTTCCATCTATCATGTATCACCTTGAGGCTGTACTTATTTCTGTCAACTTGAAAAATATGCTTATGGATCAGTGCACGCAAAATGTCATTATTCCAACCATCAAGGTTTTGGAAGCTGTTACAACAAAAAAATGCCAAGATAAATTTCATTTGGAATCCCTAGAGGCTCTTGGAGATTCATTTCTTAAATATGCTGCTAGCCAGCAGCTTTTTAGAACCTATCAAAATAATCATGAAGGTCTTCTAAGTGTGAAGAAAGACAGAATAGTTTCTAATGCTGCCCTTTGCCGGGTCGGATGCAACTACAAACTTCCGGGCTTTATTCGGAACGAGCCTTTTGATCCGAAAAAATGGATCATACCTGGAGATTTTTCTGATCCTTGTCTATTAAAAGAGGAGTTTCTTTCCAGTGAAAGAAATATCTACATTAGGGGGACAAGGAAGATTAAAAGCAAGAGTATTGCTGATGTGGTTGAGGCGCTAATTGGTGCATTTCTTAGCACTGGTGGTGAAACGGCTGCTGTTTACTTCATGAATTGGGTTGGTATAAAGGTAGATTTTACATATATACCATACGAGAGGAACTTTCCCGTGCAGCCAGAAAAGCTTGTCAATGTGAAACATCTAGAAGGCCTACTGAACTACTCATTTCATGATCCTTCTCTTCTAGTGGAAGCACTAACTCATGGTTCTTACATGCTTCCTGAGATCCCAGGATGTTATCAGCGGTTAGAATTTCTTGGTGATGCAGTGTTAGATTACTTGATCACTGTTTATTTGTACGACAAATATCCTGGGATGTCCCCAGGAGTTTTAACTGACATGAGGTCTGCTTCGGTGAACAATGACTGTTATGCCCGATCTGCTGTGAAGGCTGGATTGCACAAGCACATTCTCCATGCTTCACAGAAGCTCCACAAGGATATAGTTCAGACAATTTCTAATTTTCAGACATTATCTACAGAATCTACTTTTGGATGGGAATCTGAGACATCATTCCCCAAGGTACTGGGAGATATTGTCGAGTCTCTAGGAGGGGCAATTTATGTTGATTCAGGATACAATAAGGATATTGTCTTTGAGAGTATACGTCCTCTCTTAGAGCCCTTGATTACTCCAGAAACAATGACGCTCCATCCTGCAAGAGAGCTGAATGAGTATTGTTCGAAAATGCACTATGATATGAAGAAACCATTGAAATCTTTCCAAAATGATGCAGCTACCGTTACGATAGAGGTTGAAGCTAATGGGGTTACATATAGACATTCATCAACAGCTTCCGATAAAAAGACGGCCAAAAAATTAGCATGCAAAGAAGTCTTGAGGTCCTTGAAAGAGAGTAATGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

1398

Amino Acids

158.74

Weight (kDa)

6.35

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	23 - 191	4.6e-13	Type III restriction enzyme, res subunit
DEAD	PF00270	24 - 191	5.8e-16	DEAD/DEAH box helicase
Helicase_C	PF00271	376 - 494	3e-17	Helicase conserved C-terminal domain
Dicer_dimer	PF03368	565 - 639	4e-12	Dicer dimerisation domain
PAZ	PF02170	828 - 899	7e-09	PAZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03300 AT3G03300 AT3G03300 AT3G03300
fragaria_vesca	FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g37440 FvH4_6g37440 FvH4_6g37440
malus_domestica	MD04G1247300.v1.1 MD12G1087600.v1.1 MD14G1082600.v1.1 MD14G1082800.v1.1
prunus_persica	Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.7G047700_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1
pyrus_communis	pycom04g21800 pycom12g07520 pycom14g07170
rosa_chinensis	RchiOBHm_Chr3g0447571
rosa_laevigata	RLG00000020482 RLG00000025988
rosa_multiflora	Rmu_sc0003550.1_g000007
rosa_roxburghii	Rroxscaffold_5G00355920
rosa_rugosa	Rorug02G0603000 Rorug02G0603100
rosa_samantha	Rh3AG003300 Rh3BG002800 Rh3CG003100 Rh3DG003100
rosa_wichuraiana	Rw3G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1687
Acc36I	ACCTGC	2 cut(s)	1759, 2212
AccI	GTMKAC	3 cut(s)	315, 749, 3928
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	5 cut(s)	106, 190, 1296, 2730, 3568
AcoI	YGGCCR	2 cut(s)	526, 4134
AcuI	CTGAAG	1 cut(s)	1865
AfaI	GTAC	9 cut(s)	653, 719, 1277, 1709, 2023, 2226, 2874, 3623, 3849
AfiI	CCNNNNNNNGG	6 cut(s)	1314, 1736, 2317, 2537, 3129, 3130
AflIII	ACRYGT	1 cut(s)	656
AgeI	ACCGGT	1 cut(s)	2558
AhdI	GACNNNNNGTC	1 cut(s)	3667
AjiI	CACGTC	1 cut(s)	725
AjnI	CCWGG	8 cut(s)	444, 464, 1683, 2353, 3202, 3553, 3634, 3646
AjuI	GAANNNNNNNTTGG	8 cut(s)	522, 554, 2285, 2317, 2970, 3002, 3798, 3830
AleI	CACNNNNGTG	2 cut(s)	116, 2408
Alw21I	GWGCWC	2 cut(s)	2528, 2918
Alw26I	GTCTC	8 cut(s)	122, 623, 1142, 1563, 1766, 2368, 3824, 3873
Alw44I	GTGCAC	2 cut(s)	2524, 2914
Ama87I	CYCGRG	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	6 cut(s)	526, 1474, 1587, 2308, 3472, 4134
ApaLI	GTGCAC	2 cut(s)	2524, 2914
ApeKI	GCWGC	9 cut(s)	95, 917, 1413, 3035, 3046, 3119, 3359, 3436, 4058
AsiGI	ACCGGT	1 cut(s)	2558
Asp700I	GAANNNNTTC	5 cut(s)	500, 1344, 3081, 3109, 4043
AspLEI	GCGC	4 cut(s)	174, 1960, 2489, 3322
AspS9I	GGNCC	6 cut(s)	28, 814, 1074, 1164, 1588, 4167
AsuC2I	CCSGG	2 cut(s)	3131, 3156
AsuHPI	GGTGA	9 cut(s)	28, 1010, 1372, 2548, 2796, 2852, 3362, 3596, 3691
AsuII	TTCGAA	1 cut(s)	4007
AsuNHI	GCTAGC	1 cut(s)	3038
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	5 cut(s)	28, 814, 1074, 1164, 4167
BaeGI	GKGCMC	2 cut(s)	2528, 2918
BalI	TGGCCA	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	3948
BarI	GAAGNNNNNNTAC	2 cut(s)	1259, 1291
BbsI	GAAGAC	5 cut(s)	208, 1043, 1683, 2698, 3074
Bbv12I	GWGCWC	2 cut(s)	2528, 2918
BbvI	GCAGC	9 cut(s)	107, 904, 1400, 3022, 3058, 3106, 3346, 3448, 4070
BceAI	ACGGC	5 cut(s)	1369, 1461, 2660, 3372, 4149
BciT130I	CCWGG	8 cut(s)	446, 466, 1685, 2355, 3204, 3555, 3636, 3648
BciVI	GTATCC	2 cut(s)	2663, 3893
BclI	TGATCA	1 cut(s)	3606
BcnI	CCSGG	2 cut(s)	3131, 3156
BcoDI	GTCTC	8 cut(s)	122, 623, 1142, 1563, 1766, 2368, 3824, 3873
BfmI	CTRYAG	4 cut(s)	1612, 1651, 2233, 3801
BfoI	RGCGCY	3 cut(s)	175, 2490, 3323
BfuAI	ACCTGC	2 cut(s)	1759, 2212
BfuI	GTATCC	2 cut(s)	2663, 3893
BisI	GCNGC	9 cut(s)	96, 918, 1414, 3036, 3047, 3120, 3360, 3437, 4059
BlpI	GCTNAGC	1 cut(s)	422
BlsI	GCNGC	9 cut(s)	97, 919, 1415, 3037, 3048, 3121, 3361, 3438, 4060
Bme18I	GGWCC	5 cut(s)	28, 814, 1074, 1164, 4167
BmeRI	GACNNNNNGTC	1 cut(s)	3667
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	725
BmgT120I	GGNCC	6 cut(s)	28, 814, 1074, 1164, 1588, 4167
BmiI	GGNNCC	3 cut(s)	6, 136, 1727
BmrI	ACTGGG	1 cut(s)	3860
BmsI	GCATC	9 cut(s)	316, 1290, 2193, 2215, 2337, 2562, 3128, 3577, 4045
BmtI	GCTAGC	1 cut(s)	3042
BmuI	ACTGGG	1 cut(s)	3860
BpiI	GAAGAC	5 cut(s)	208, 1043, 1683, 2698, 3074
BplI	GAGNNNNNCTC	4 cut(s)	119, 151, 722, 754
BpmI	CTGGAG	6 cut(s)	363, 1689, 1706, 2217, 3225, 3942
Bpu10I	CCTNAGC	1 cut(s)	2781
Bpu1102I	GCTNAGC	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	4007
BpuEI	CTTGAG	3 cut(s)	647, 2885, 4183
BpuMI	CCSGG	2 cut(s)	3131, 3156
Bsa29I	ATCGAT	2 cut(s)	1382, 1629
BsaBI	GATNNNNATC	3 cut(s)	155, 2363, 3823
BsaI	GGTCTC	2 cut(s)	1766, 2368
BsaWI	WCCGGW	3 cut(s)	137, 2083, 2558
BsaXI	ACNNNNNCTCC	4 cut(s)	3738, 3768, 3846, 3876
Bsc4I	CCNNNNNNNGG	6 cut(s)	1314, 1736, 2317, 2537, 3129, 3130
Bse118I	RCCGGY	1 cut(s)	2558
Bse1I	ACTGG	7 cut(s)	136, 1563, 1672, 1980, 3249, 3349, 3855
Bse3DI	GCAATG	4 cut(s)	1077, 1105, 1278, 2038
Bse8I	GATNNNNATC	3 cut(s)	155, 2363, 3823
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	8 cut(s)	446, 466, 1685, 2355, 3204, 3555, 3636, 3648
BseCI	ATCGAT	2 cut(s)	1382, 1629
BseJI	GATNNNNATC	3 cut(s)	155, 2363, 3823
BseLI	CCNNNNNNNGG	6 cut(s)	1314, 1736, 2317, 2537, 3129, 3130
BseMI	GCAATG	4 cut(s)	1077, 1105, 1278, 2038
BseMII	CTCAG	7 cut(s)	672, 832, 1941, 2614, 2772, 3537, 3819
BseNI	ACTGG	7 cut(s)	136, 1563, 1672, 1980, 3249, 3349, 3855
BseRI	GAGGAG	4 cut(s)	1985, 2125, 2219, 3251
BseSI	GKGCMC	2 cut(s)	2528, 2918
BseXI	GCAGC	9 cut(s)	107, 904, 1400, 3022, 3058, 3106, 3346, 3448, 4070
BsgI	GTGCAG	1 cut(s)	3455
BshFI	GGCC	6 cut(s)	528, 1476, 1589, 2310, 3474, 4136
BshTI	ACCGGT	1 cut(s)	2558
BshVI	ATCGAT	2 cut(s)	1382, 1629
BsiHKAI	GWGCWC	2 cut(s)	2528, 2918
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	5 cut(s)	138, 2084, 2559, 3130, 3155
BslFI	GGGAC	3 cut(s)	1973, 3289, 3628
BslI	CCNNNNNNNGG	6 cut(s)	1314, 1736, 2317, 2537, 3129, 3130
BsmAI	GTCTC	8 cut(s)	122, 623, 1142, 1563, 1766, 2368, 3824, 3873
BsmFI	GGGAC	3 cut(s)	1973, 3289, 3628
BsmI	GAATGC	2 cut(s)	458, 1491
BsnI	GGCC	6 cut(s)	528, 1476, 1589, 2310, 3474, 4136
Bso31I	GGTCTC	2 cut(s)	1766, 2368
BsoBI	CYCGRG	1 cut(s)	12
Bsp119I	TTCGAA	1 cut(s)	4007
Bsp1286I	GDGCHC	3 cut(s)	2528, 2918, 3948
Bsp13I	TCCGGA	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	651
Bsp1720I	GCTNAGC	1 cut(s)	422
BspACI	CCGC	5 cut(s)	106, 190, 1296, 2730, 3568
BspANI	GGCC	6 cut(s)	528, 1476, 1589, 2310, 3474, 4136
BspCNI	CTCAG	7 cut(s)	673, 831, 1942, 2613, 2773, 3538, 3820
BspDI	ATCGAT	2 cut(s)	1382, 1629
BspEI	TCCGGA	1 cut(s)	137
BspHI	TCATGA	3 cut(s)	3073, 3372, 3493
BspLI	GGNNCC	3 cut(s)	6, 136, 1727
BspMI	ACCTGC	2 cut(s)	1759, 2212
BspOI	GCTAGC	1 cut(s)	3042
BspT104I	TTCGAA	1 cut(s)	4007
BspTNI	GGTCTC	2 cut(s)	1766, 2368
BsrDI	GCAATG	4 cut(s)	1077, 1105, 1278, 2038
BsrFI	RCCGGY	1 cut(s)	2558
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	7 cut(s)	136, 1563, 1672, 1980, 3249, 3349, 3855
BssAI	RCCGGY	1 cut(s)	2558
BssNAI	GTATAC	2 cut(s)	750, 3929
BssT1I	CCWWGG	2 cut(s)	1757, 3843
Bst1107I	GTATAC	2 cut(s)	750, 3929
Bst2UI	CCWGG	8 cut(s)	446, 466, 1685, 2355, 3204, 3555, 3636, 3648
Bst4CI	ACNGT	8 cut(s)	320, 522, 1450, 1467, 2676, 3613, 3692, 4066
Bst6I	CTCTTC	4 cut(s)	1386, 1611, 1764, 3510
BstAUI	TGTACA	1 cut(s)	651
BstBI	TTCGAA	1 cut(s)	4007
BstDSI	CCRYGG	1 cut(s)	2517
BstH2I	RGCGCY	3 cut(s)	175, 2490, 3323
BstHHI	GCGC	4 cut(s)	174, 1960, 2489, 3322
BstMAI	GTCTC	8 cut(s)	122, 623, 1142, 1563, 1766, 2368, 3824, 3873
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 169, 914, 2493, 2550, 2782, 3445, 3704, 3713
BstNI	CCWGG	8 cut(s)	446, 466, 1685, 2355, 3204, 3555, 3636, 3648
BstNSI	RCATGY	9 cut(s)	660, 756, 1050, 1860, 1958, 2502, 2720, 3541, 4152
BstSFI	CTRYAG	4 cut(s)	1612, 1651, 2233, 3801
BstSLI	GKGCMC	2 cut(s)	2528, 2918
BstV1I	GCAGC	9 cut(s)	107, 904, 1400, 3022, 3058, 3106, 3346, 3448, 4070
BstV2I	GAAGAC	5 cut(s)	208, 1043, 1683, 2698, 3074
BstX2I	RGATCY	1 cut(s)	3549
BstXI	CCANNNNNNTGG	1 cut(s)	3850
BstYI	RGATCY	1 cut(s)	3549
BstZ17I	GTATAC	2 cut(s)	750, 3929
Bsu15I	ATCGAT	2 cut(s)	1382, 1629
BsuI	GTATCC	2 cut(s)	2663, 3893
BsuRI	GGCC	6 cut(s)	528, 1476, 1589, 2310, 3474, 4136
BsuTUI	ATCGAT	2 cut(s)	1382, 1629
BtgI	CCRYGG	1 cut(s)	2517
BtrI	CACGTC	1 cut(s)	725
BtsI	GCAGTG	1 cut(s)	3597
BveI	ACCTGC	2 cut(s)	1759, 2212
CciI	TCATGA	3 cut(s)	3073, 3372, 3493
CfoI	GCGC	4 cut(s)	174, 1960, 2489, 3322
Cfr10I	RCCGGY	1 cut(s)	2558
Cfr13I	GGNCC	6 cut(s)	28, 814, 1074, 1164, 1588, 4167
ClaI	ATCGAT	2 cut(s)	1382, 1629
CseI	GACGC	4 cut(s)	266, 2389, 2703, 3979
Csp6I	GTAC	9 cut(s)	652, 718, 1276, 1708, 2022, 2225, 2873, 3622, 3848
CspAI	ACCGGT	1 cut(s)	2558
CviQI	GTAC	9 cut(s)	652, 718, 1276, 1708, 2022, 2225, 2873, 3622, 3848
DraI	TTTAAA	2 cut(s)	1747, 2188
DrdI	GACNNNNNNGTC	1 cut(s)	1687
DriI	GACNNNNNGTC	1 cut(s)	3667
DseDI	GACNNNNNNGTC	1 cut(s)	1687
EaeI	YGGCCR	2 cut(s)	526, 4134
Eam1104I	CTCTTC	4 cut(s)	1386, 1611, 1764, 3510
Eam1105I	GACNNNNNGTC	1 cut(s)	3667
EarI	CTCTTC	4 cut(s)	1386, 1611, 1764, 3510
Eco130I	CCWWGG	2 cut(s)	1757, 3843
Eco147I	AGGCCT	1 cut(s)	3474
Eco24I	GRGCYC	1 cut(s)	3948
Eco31I	GGTCTC	2 cut(s)	1766, 2368
Eco47I	GGWCC	5 cut(s)	28, 814, 1074, 1164, 4167
Eco57I	CTGAAG	1 cut(s)	1865
Eco88I	CYCGRG	1 cut(s)	12
EcoO109I	RGGNCCY	3 cut(s)	1164, 1588, 4167
EcoRI	GAATTC	3 cut(s)	640, 1492, 2262
EcoRII	CCWGG	8 cut(s)	444, 464, 1683, 2353, 3202, 3553, 3634, 3646
EcoT14I	CCWWGG	2 cut(s)	1757, 3843
EcoT22I	ATGCAT	2 cut(s)	2208, 2504
EcoT38I	GRGCYC	1 cut(s)	3948
ErhI	CCWWGG	2 cut(s)	1757, 3843
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	3 cut(s)	1973, 3289, 3628
FauI	CCCGC	2 cut(s)	1289, 2723
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	3606
FblI	GTMKAC	3 cut(s)	315, 749, 3928
Fnu4HI	GCNGC	9 cut(s)	96, 918, 1414, 3036, 3047, 3120, 3360, 3437, 4059
FriOI	GRGCYC	1 cut(s)	3948
Fsp4HI	GCNGC	9 cut(s)	96, 918, 1414, 3036, 3047, 3120, 3360, 3437, 4059
GlaI	GCGC	4 cut(s)	173, 1959, 2488, 3321
GluI	GCNGC	9 cut(s)	96, 918, 1414, 3036, 3047, 3120, 3360, 3437, 4059
GsuI	CTGGAG	6 cut(s)	363, 1689, 1706, 2217, 3225, 3942
HaeII	RGCGCY	3 cut(s)	175, 2490, 3323
HaeIII	GGCC	6 cut(s)	528, 1476, 1589, 2310, 3474, 4136
HapII	CCGG	5 cut(s)	138, 2084, 2559, 3130, 3155
HgaI	GACGC	4 cut(s)	266, 2389, 2703, 3979
HhaI	GCGC	4 cut(s)	174, 1960, 2489, 3322
Hin6I	GCGC	4 cut(s)	172, 1958, 2487, 3320
HinP1I	GCGC	4 cut(s)	172, 1958, 2487, 3320
HincII	GTYRAC	1 cut(s)	2887
HindII	GTYRAC	1 cut(s)	2887
HindIII	AAGCTT	5 cut(s)	84, 1675, 1866, 2298, 3446
HpaII	CCGG	5 cut(s)	138, 2084, 2559, 3130, 3155
HphI	GGTGA	9 cut(s)	28, 1010, 1372, 2548, 2796, 2852, 3362, 3596, 3691
HpyCH4III	ACNGT	8 cut(s)	320, 522, 1450, 1467, 2676, 3613, 3692, 4066
HpyCH4IV	ACGT	4 cut(s)	716, 724, 1404, 3931
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 169, 914, 2493, 2550, 2782, 3445, 3704, 3713
HpySE526I	ACGT	4 cut(s)	716, 724, 1404, 3931
HspAI	GCGC	4 cut(s)	172, 1958, 2487, 3320
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	3606
Lsp1109I	GCAGC	9 cut(s)	107, 904, 1400, 3022, 3058, 3106, 3346, 3448, 4070
LweI	GCATC	9 cut(s)	316, 1290, 2193, 2215, 2337, 2562, 3128, 3577, 4045
MaeII	ACGT	4 cut(s)	716, 724, 1404, 3931
MaeIII	GTNAC	8 cut(s)	71, 516, 1349, 2401, 2802, 2959, 4066, 4093
MfeI	CAATTG	1 cut(s)	1992
MflI	RGATCY	1 cut(s)	3549
MhlI	GDGCHC	3 cut(s)	2528, 2918, 3948
MlsI	TGGCCA	1 cut(s)	528
MluNI	TGGCCA	1 cut(s)	528
MlyI	GAGTC	5 cut(s)	370, 1697, 1955, 2122, 3875
MmeI	TCCRAC	4 cut(s)	2133, 2547, 2960, 3115
Mox20I	TGGCCA	1 cut(s)	528
Mph1103I	ATGCAT	2 cut(s)	2208, 2504
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	5 cut(s)	500, 1344, 3081, 3109, 4043
MscI	TGGCCA	1 cut(s)	528
MslI	CAYNNNNRTG	5 cut(s)	116, 480, 1045, 2408, 2501
Msp20I	TGGCCA	1 cut(s)	528
MspA1I	CMGCKG	4 cut(s)	1296, 2018, 2820, 3568
MspI	CCGG	5 cut(s)	138, 2084, 2559, 3130, 3155
MunI	CAATTG	1 cut(s)	1992
Mva1269I	GAATGC	2 cut(s)	458, 1491
MvaI	CCWGG	8 cut(s)	446, 466, 1685, 2355, 3204, 3555, 3636, 3648
MwoI	GCNNNNNNNGC	9 cut(s)	92, 169, 914, 2493, 2550, 2782, 3445, 3704, 3713
NciI	CCSGG	2 cut(s)	3131, 3156
NdeI	CATATG	1 cut(s)	481
NheI	GCTAGC	1 cut(s)	3038
NlaIV	GGNNCC	3 cut(s)	6, 136, 1727
NmuCI	GTSAC	2 cut(s)	2401, 2802
NsiI	ATGCAT	2 cut(s)	2208, 2504
NspI	RCATGY	9 cut(s)	660, 756, 1050, 1860, 1958, 2502, 2720, 3541, 4152
NspV	TTCGAA	1 cut(s)	4007
OliI	CACNNNNGTG	2 cut(s)	116, 2408
PaeI	GCATGC	3 cut(s)	1860, 1958, 4152
PagI	TCATGA	3 cut(s)	3073, 3372, 3493
PasI	CCCWGGG	1 cut(s)	2354
PceI	AGGCCT	1 cut(s)	3474
PciI	ACATGT	1 cut(s)	656
PctI	GAATGC	2 cut(s)	458, 1491
PdmI	GAANNNNTTC	5 cut(s)	500, 1344, 3081, 3109, 4043
PfoI	TCCNGGA	1 cut(s)	444
PinAI	ACCGGT	1 cut(s)	2558
PkrI	GCNGC	9 cut(s)	97, 919, 1415, 3037, 3048, 3121, 3361, 3438, 4060
PleI	GAGTC	5 cut(s)	370, 1696, 1954, 2121, 3874
PpsI	GAGTC	5 cut(s)	370, 1696, 1954, 2121, 3874
PpuMI	RGGWCCY	2 cut(s)	1164, 4167
PscI	ACATGT	1 cut(s)	656
Psp5II	RGGWCCY	2 cut(s)	1164, 4167
Psp6I	CCWGG	8 cut(s)	444, 464, 1683, 2353, 3202, 3553, 3634, 3646
PspGI	CCWGG	8 cut(s)	444, 464, 1683, 2353, 3202, 3553, 3634, 3646
PspN4I	GGNNCC	3 cut(s)	6, 136, 1727
PspPI	GGNCC	6 cut(s)	28, 814, 1074, 1164, 1588, 4167
PspPPI	RGGWCCY	2 cut(s)	1164, 4167
PsuI	RGATCY	1 cut(s)	3549
PvuII	CAGCTG	2 cut(s)	2018, 2820
RsaI	GTAC	9 cut(s)	653, 719, 1277, 1709, 2023, 2226, 2874, 3623, 3849
RsaNI	GTAC	9 cut(s)	652, 718, 1276, 1708, 2022, 2225, 2873, 3622, 3848
RseI	CAYNNNNRTG	5 cut(s)	116, 480, 1045, 2408, 2501
SatI	GCNGC	9 cut(s)	96, 918, 1414, 3036, 3047, 3120, 3360, 3437, 4059
Sau96I	GGNCC	6 cut(s)	28, 814, 1074, 1164, 1588, 4167
SchI	GAGTC	5 cut(s)	370, 1697, 1955, 2122, 3875
SduI	GDGCHC	3 cut(s)	2528, 2918, 3948
SfaNI	GCATC	9 cut(s)	316, 1290, 2193, 2215, 2337, 2562, 3128, 3577, 4045
SfcI	CTRYAG	4 cut(s)	1612, 1651, 2233, 3801
SfuI	TTCGAA	1 cut(s)	4007
SinI	GGWCC	5 cut(s)	28, 814, 1074, 1164, 4167
SmiMI	CAYNNNNRTG	5 cut(s)	116, 480, 1045, 2408, 2501
SmlI	CTYRAG	3 cut(s)	626, 2864, 4162
SmoI	CTYRAG	3 cut(s)	626, 2864, 4162
SphI	GCATGC	3 cut(s)	1860, 1958, 4152
SseBI	AGGCCT	1 cut(s)	3474
SsiI	CCGC	5 cut(s)	106, 190, 1296, 2730, 3568
SspI	AATATT	6 cut(s)	387, 549, 940, 1229, 1888, 2256
StuI	AGGCCT	1 cut(s)	3474
StyI	CCWWGG	2 cut(s)	1757, 3843
TaaI	ACNGT	8 cut(s)	320, 522, 1450, 1467, 2676, 3613, 3692, 4066
TaiI	ACGT	4 cut(s)	719, 727, 1407, 3934
TaqI	TCGA	7 cut(s)	618, 1382, 1543, 1629, 2769, 3864, 4007
TatI	WGTACW	4 cut(s)	651, 1275, 1707, 2872
TseFI	GTSAC	2 cut(s)	2401, 2802
TseI	GCWGC	9 cut(s)	95, 917, 1413, 3035, 3046, 3119, 3359, 3436, 4058
Tsp45I	GTSAC	2 cut(s)	2401, 2802
TspGWI	ACGGA	2 cut(s)	1916, 2506
VneI	GTGCAC	2 cut(s)	2524, 2914
VpaK11BI	GGWCC	5 cut(s)	28, 814, 1074, 1164, 4167
XbaI	TCTAGA	3 cut(s)	1024, 1469, 3466
XceI	RCATGY	9 cut(s)	660, 756, 1050, 1860, 1958, 2502, 2720, 3541, 4152
XcmI	CCANNNNNNNNNTGG	2 cut(s)	121, 2947
XmiI	GTMKAC	3 cut(s)	315, 749, 3928
XmnI	GAANNNNTTC	5 cut(s)	500, 1344, 3081, 3109, 4043
Zsp2I	ATGCAT	2 cut(s)	2208, 2504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.