Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001073

Physical Location & Seq

Genomic Coordinates Reverse (-)

35081843 .. 35082376

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTGCTGTGCACTTCATGAATTGGGTTGGTATAAAAGTAGATTTTACCTATATACCATATGACAGGAACTTTCCGGTGCAGCCAGAGAAGCTTATTAATGTCAAACATTTAGAGAAGCAACTAAACTACTTATTCTGTGATCCTTATCTTCTAGTGGAAGCACTAACTCATGGTTCTTACATGCTCCCTGAGATCCCAGGATGTTATCAGCAGTTAGAATTTCTTGGGGACGCAGTTTTAGATTACCTGATCACTATTTATCTATCCAACAAATATCCTGGGATGTTGCCAGGAGTTTTAACTGATATGAGGTCTGCTTCGGTAAATAATGATTGTTATGCCCGAGCTGGTGTGAAGGCTGAATTGCACAAGCACATTCTCCATGCTTCAAAGAAACTCCACAAGGATATAGTTTACACAGTTGATAACTTTAAGAAGTTACGTATACAATCAACTTTTGGATGGGAATCTGAGACTTCGTTCTCCAAGGTGATCAATGGTTTGACTTGGCGGACAATGGTGAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

177

Amino Acids

20.41

Weight (kDa)

7.69

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	48 - 129	1e-09	Ribonuclease-III-like
Ribonuclease_3	PF00636	71 - 141	6.4e-15	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03300 AT3G03300 AT3G03300 AT3G03300
fragaria_vesca	FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g37440 FvH4_6g37440 FvH4_6g37440
malus_domestica	MD04G1247300.v1.1 MD12G1087600.v1.1 MD14G1082600.v1.1 MD14G1082800.v1.1
prunus_persica	Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.7G047700_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1
pyrus_communis	pycom04g21800 pycom12g07520 pycom14g07170
rosa_chinensis	RchiOBHm_Chr3g0447571
rosa_laevigata	RLG00000020482 RLG00000025988
rosa_multiflora	Rmu_sc0003550.1_g000007
rosa_roxburghii	Rroxscaffold_5G00355920
rosa_rugosa	Rorug02G0603000 Rorug02G0603100
rosa_samantha	Rh3AG003300 Rh3BG002800 Rh3CG003100 Rh3DG003100
rosa_wichuraiana	Rw3G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	2 cut(s)	137, 190
AcsI	RAATTY	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	393
AjnI	CCWGG	3 cut(s)	199, 280, 292
AluBI	AGCT	2 cut(s)	94, 350
AluI	AGCT	2 cut(s)	94, 350
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	470
Alw44I	GTGCAC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	137, 190
Ama87I	CYCGRG	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	5, 82
ApoI	RAATTY	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	459
BciT130I	CCWGG	3 cut(s)	201, 282, 294
BclI	TGATCA	2 cut(s)	252, 495
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	2 cut(s)	6, 83
BlsI	GCNGC	2 cut(s)	7, 84
Bme1390I	CCNGG	3 cut(s)	201, 282, 294
BmeT110I	CYCGRG	1 cut(s)	345
BmrFI	CCNGG	3 cut(s)	201, 282, 294
BsaAI	YACGTR	1 cut(s)	446
BsaBI	GATNNNNATC	2 cut(s)	147, 469
BsaJI	CCNNGG	3 cut(s)	199, 281, 489
BsaWI	WCCGGW	1 cut(s)	76
Bse8I	GATNNNNATC	2 cut(s)	147, 469
BseBI	CCWGG	3 cut(s)	201, 282, 294
BseDI	CCNNGG	3 cut(s)	199, 281, 489
BseGI	GGATG	3 cut(s)	209, 291, 470
BseJI	GATNNNNATC	2 cut(s)	147, 469
BseMII	CTCAG	2 cut(s)	183, 465
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	142, 195, 252, 495
BspACI	CCGC	1 cut(s)	514
BspCNI	CTCAG	2 cut(s)	184, 466
BspHI	TCATGA	1 cut(s)	18
BspPI	GGATC	2 cut(s)	137, 190
BssECI	CCNNGG	3 cut(s)	199, 281, 489
BssMI	GATC	4 cut(s)	142, 195, 252, 495
BssNAI	GTATAC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	489
Bst1107I	GTATAC	1 cut(s)	449
Bst2UI	CCWGG	3 cut(s)	201, 282, 294
Bst4CI	ACNGT	1 cut(s)	424
BstBAI	YACGTR	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	192, 474
BstF5I	GGATG	3 cut(s)	209, 291, 470
BstKTI	GATC	4 cut(s)	145, 198, 255, 498
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	4 cut(s)	142, 195, 252, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	3 cut(s)	201, 282, 294
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	199, 280, 292
BstSLI	GKGCMC	1 cut(s)	15
BstSNI	TACGTA	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BstZ17I	GTATAC	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	209, 291, 470
CciI	TCATGA	1 cut(s)	18
CseI	GACGC	1 cut(s)	242
CviAII	CATG	4 cut(s)	19, 173, 184, 386
CviJI	RGCY	5 cut(s)	5, 85, 94, 350, 362
CviKI_1	RGCY	5 cut(s)	5, 85, 94, 350, 362
DdeI	CTNAG	2 cut(s)	192, 474
DpnI	GATC	4 cut(s)	144, 197, 254, 497
DpnII	GATC	4 cut(s)	142, 195, 252, 495
EciI	GGCGGA	1 cut(s)	529
Eco105I	TACGTA	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	345
EcoRII	CCWGG	3 cut(s)	199, 280, 292
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	4 cut(s)	22, 176, 187, 389
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	4 cut(s)	18, 172, 183, 385
FauNDI	CATATG	1 cut(s)	61
FbaI	TGATCA	2 cut(s)	252, 495
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	6, 83
FokI	GGATG	3 cut(s)	216, 298, 477
Fsp4HI	GCNGC	2 cut(s)	6, 83
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	6, 83
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	22, 176, 187, 389
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	470
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	3 cut(s)	13, 418, 449
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	13, 418, 449
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	3 cut(s)	13, 82, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	192, 474
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	4 cut(s)	22, 176, 187, 389
Ksp22I	TGATCA	2 cut(s)	252, 495
Kzo9I	GATC	4 cut(s)	142, 195, 252, 495
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	4 cut(s)	144, 197, 254, 497
MboI	GATC	4 cut(s)	142, 195, 252, 495
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	22, 221, 365, 526
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	1 cut(s)	306
MseI	TTAA	3 cut(s)	99, 302, 435
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	3 cut(s)	201, 282, 294
MvaI	CCWGG	3 cut(s)	201, 282, 294
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	4 cut(s)	142, 195, 252, 495
NlaIII	CATG	4 cut(s)	22, 176, 187, 389
NspI	RCATGY	1 cut(s)	187
PagI	TCATGA	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	7, 84
Ppu21I	YACGTR	1 cut(s)	446
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	3 cut(s)	199, 280, 292
PspGI	CCWGG	3 cut(s)	199, 280, 292
PsuI	RGATCY	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	99, 302, 435
SatI	GCNGC	2 cut(s)	6, 83
Sau3AI	GATC	4 cut(s)	142, 195, 252, 495
ScrFI	CCNGG	3 cut(s)	201, 282, 294
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	7 cut(s)	53, 96, 252, 317, 352, 448, 495
SnaBI	TACGTA	1 cut(s)	446
Sse9I	AATT	4 cut(s)	22, 221, 365, 526
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	199, 280, 292
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	448
TasI	AATT	4 cut(s)	22, 221, 365, 526
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	3 cut(s)	99, 302, 435
Tru9I	TTAA	3 cut(s)	99, 302, 435
TseI	GCWGC	2 cut(s)	5, 82
TspDTI	ATGAA	2 cut(s)	7, 35
VneI	GTGCAC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.