Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001073

Physical Location & Seq

Genomic Coordinates Reverse (-)

29461821 .. 29472740

Gene Structure 10920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37440.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4182 bp

ATGGAACCAGTTAGCATGGGGATCAAATCAACCCAGCAATCTGCTGATCCTCTCCCATTCGCAAGAAGTTACCAACTAGAAGCACTGGATGCAGCAATTAAGCGCAATACCATCGTGTTCTTGGAGACTGGCTCTGGGAAAACTCTTATTGCCATAATGCTTCTTCGGAGCTATTCCCATATGCTCCGAAAACCTTCTCCATTTATTTCCATCTTCTTGGTTCCCCAAGTTCCCTTGGTTAAGCAGCAAGCGGATGCAGTCAAAATGCACACCGACTTGAGTGTTGGTATGTATTGGGGAGACATTGGAGTCGACTTCTGGGATGCTGATATGTGGAAGCAGGAAATTGAAAAATATGAGGTGCTTGTGATGACTCCCGCCATATTGCTTAATAATTTGAGGCATAGCTTCTTCAAACTAAGCATGATAAAGGTTTTGATAATGGATGAATGCCAACATGCGAGGGGTAACCATCCATATGCTTGTATAATGAAGGAATTTTTTCATCATCAGTTACAATTTGGTCCCTCTGATCTTCCAAGAATATTCGGAATGACTGCTTCCCCCATAAAATCAAAAGGCGGAAAGCAAGAATTATCCTATCAGAAAGCAATACATGAACTTGAGACACTAATGAATTCAAAGGTGTATACATGTGTTAGTGAAACTGTGCTTGCTGAGTTTGTACCAACTTCAACTCCCAAGTTTAGAACATACAGACGCTGGGAGATTCCATCTGCCTTGTATACATGCTTAACAAAGCAATTGAAGAACTTGAAAGAAAAGCATGAATTGTCGATAAGAAGTTTGGACCGTGGTGAATCTTCACAATCCATAAGCAAAAAGATGATGAAGTTCTTTTCAGCTTTAACTTTTTGTTTGGAAGAATTTGGTGTTTGGTTTGCTTCAAAGGCGGCATGGTGGTTTTCACACAGCGAAACTGACTTCTTTACGTGGGAGAAGCTAGATGTGATGGGTGAGAGAATTGTCAGAAGTTTCAGTTTAGAAGCCTACAAGGCATTTGCATATTTTCTACCGTCTGATCCAAACTGGACGATCGCTGGTGATGTCACAGACAATATGAACAAGGGGTTCTTAAGTTCTAAAGTTGTCTGCCTCATTCAGTTGCTTCTTGAATACAGGGGCTTACCAAATTTGAGATGTATAGTTTTTGTTGAAAGGGTCATCACAGCAGTTGTTCTAGAATCTTTGTTGAATGAATTTCTTCCTGAACATAATGACTGGAAGTCAAAGTACATTGCTGGAAATAACAGTGGGATGCAATCCCAAACCAGAAAATATCAGAATGAGATAGTTGAAGGATTTCGGAATGGCATGGTGAACATTATTGTTGCAACATCGATTCTTGAAGAGGGTTTAGACGTTCAAAGCTGCAATTTGGTTATTAGATTTGACCCTTGTTCCACTGTTTGTAGCTTCATACAGTCTAAAGGCCGTGCAAGGATGGAAAACTCAGATTATGTATTAATGGTGGAGAGTGGAGATTTGAATACATATTCTCGACTACAAAATTATCTTACAAGTGAAGATATAATGAGAAAGGAGTCCCTACGACATTCTTCTCTTCCTTGCACTTCACTGGATATCGATTTCCAGAATGATGGCTCTTATAGGGTTGAAAGCACTGGAGCAACCTTGACCCTAGATTCTTCTATTAGTTTGATATACTTCTACTGCTCTAGGCTACCTTCTGATGGATATTTTAAACCTGCTCCGAGGTGGGATGAGGAGACCTGCATTCTACATCTTCCTAAGAGCTGTCCAATACCTTTTGTTCATGAAGGAAGTGGTAAAGCTCTAAAGAAGATTGCATGCTTTGAAGCTTGCAAGCAACTTCACAAGATTGGTGCTTTAACGGATAGTCTGGTTCCAGATGTTGTGATGGAAAAAGCCCAACAAGAGTTTGAGTGTGAGCCTTATGATGAAGAACAATCATGTTATGTCCCAAGTGAATTGGTCAAAACTTGCTCAAATGATGATACTATGTTGTATCACCAGTACATAATTGTGCTGGATCAGACTTTTGACTATGAGATTCCAGTTAAAGATTTTGTGCTCTGCATGAGGACTAAGCTCGATTTTGAAATTGCAAATTGGCATTCTGAGTTAGAATTTGGCAGCGGTTGTTTAACAGTGAACTTCAAATATGGTGGTGAGATTCATTTGAATGCAGAGCAGGTACTCAACTGTAGAAGATTTCAAGTCACAATTTTCGGAATTCTAATTGATCACAACTTGGATAAGTGGAATGAAGTTTTTGATGGACTTTCTTTGAGAGAAAGTCTTGGCGTTGATTATTTGTTGCTCCCAGGGACCAGAGTGAGACCTTCGATTATTGATTGGCAATGTGTTAGATCTGTGTTATTTTCACGTGGAGAATATGTTAAGGAACACATAGATTGTTCTCTACCCAATGGTTGTTCCCATGCTGTACAGACCAAAAACAGTGTGGTTTGTACTTGCATGATTCAAAATTCCTTGGTGTATACTCCTCATAACGGTAGCTTGTATTACATCACTGGGGTATTGGATGAGTTGAATGGGAACTCACTTCTGCGGCTTAGTGAGGACAAAGTTCTTACATACAAGAACTACTTTGAAGCACGGCATGGGATTAACTTGTGTTATGATACACAGTCGTTGCTGAAAGGGAGACGCATTTTTCGTGTGCAAAGGCAGGTCCCTAGGGGTGGGCAGCAGACAGAAAAAGAATCAAAAGAAATATATGTGGAGTTGCCTCCTGAGCTGTGTTCTATAATCATGTCGCCCATATCAATCAGTACTTTATACTCGTTCTCATTTGTTCCGGCCATCATGCATCACTTGGAGGCTGTACTTCTTGCTGTTAATCTGAAAAGAATGCTTCTGGATCAGTGCTTGCCGAATGTCATTATTCCAACCATTAAGGTCCTGGAAGCTATTACCACAAAGAAGTGCCAAGAAAAATTGCATTTGGAATCCCTAGAGGCTCTTGGGGATTCATTTCTTAAATATGCTGCTAGCCAGCAGCTTTTTAGGACTTGTCAAAATAACCATGAAGGCCTTCTAAGTGTAAAGAAAGACAGAATAGTTTCTAATGCTGCGCTTTGCAAGCTTGGTTGCGACCGCAAACTTCCGGGTTTTATTCGTAATGAGCCTTTCGATCCAAAGAAATGGATTATACCTGGAGACTTTTCTGGACCTTGTTCATTAAAGGAGGAGTTGCTTTCTAGTGAAAGAAAAATCTACATCAGGGGAACAAGGAGGATTAAAAGCAAGAGAATTGCTGATATTGTCGAGGCACTTATTGGTGCATTCCTTGTCACGGGTGGTGAAATGGCTGCGGTATACTTTATGAATTGGGTAGGTATAAAGGTAGATTTTACCTATATTCCATATGACAGGAACTTTCCAGTGCAGCCAGAGAAGCTCATCAATGTCAAAGTTTTGGAGAAGAAACTTAACTACTCATTTCATGATCCTTCTCTCCTGGTGGAAGCACTGACTCATGGTTCTTACATGCTCCCTGAGATCCCAGGATGTTATCAGCGGTTAGAATTTCTTGGGGATGCAGTTTTAGATTACCTGATCACTATTTATCTGTACAACAAATATCCTGGGATGTCGCCAGGAGTTTTAACTGATATGAGGTCTGCTTCAGTGAACAATGATTGTTATGCTCGATCTTCTGTGAAGGCTGAATTGCACAAGCACATCCTCCATGCTTCACAGAAACTCCACAGGGAAATAGTTCACACAGTTGATAACTTTGAGAAGTTACACACAGAATCAACTTTTGGATGGGAATCTGAGACTTCTTTCCCCAAGGTACTAGGAGATATTATTGAGTCTCTAGGAGGGGCAATTTTTGTCGATTCCGGATACGATAAGAATGTCGTATTTCAGAGTATACGTCCTCTCTTAGAGCCCTTAATTACTCTGGAAACGATGAGGCTCCATCCTGCTAGGGAGCTGAATGAATTTTGTGCAAAAATGCATTATGACATGAAGAAGCCATTAAAATCATTTGAAAATGATGTGGCTACCATTACTATTGAGGTCGAAGCTAATGGGGTCACGTACAAGCATACATCAAAAGCTTCTGATAAGAAGACGGGAATTAAATTAGCCAGCAAAGAAGTTCTGAGGTCGTTGAAAGAGAGTTCTCATTCATCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

1394

Amino Acids

158.62

Weight (kDa)

6.44

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	22 - 189	2.2e-11	Type III restriction enzyme, res subunit
DEAD	PF00270	23 - 190	1.8e-13	DEAD/DEAH box helicase
Helicase_C	PF00271	369 - 487	2.4e-15	Helicase conserved C-terminal domain
Dicer_dimer	PF03368	558 - 632	5.6e-12	Dicer dimerisation domain
PAZ	PF02170	821 - 942	4.3e-12	PAZ domain
Ribonuclease_3	PF00636	993 - 1111	5.3e-18	Ribonuclease III domain
Ribonucleas_3_3	PF14622	1160 - 1241	3.1e-10	Ribonuclease-III-like
Ribonuclease_3	PF00636	1183 - 1258	5.9e-16	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03300 AT3G03300 AT3G03300 AT3G03300
fragaria_vesca	FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g00200 FvH4_6g37440 FvH4_6g37440 FvH4_6g37440
malus_domestica	MD04G1247300.v1.1 MD12G1087600.v1.1 MD14G1082600.v1.1 MD14G1082800.v1.1
prunus_persica	Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.6G363600_v2.0.a1 Prupe.7G047700_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G047900_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1 Prupe.7G048000_v2.0.a1
pyrus_communis	pycom04g21800 pycom12g07520 pycom14g07170
rosa_chinensis	RchiOBHm_Chr3g0447571
rosa_laevigata	RLG00000020482 RLG00000025988
rosa_multiflora	Rmu_sc0003550.1_g000007
rosa_roxburghii	Rroxscaffold_5G00355920
rosa_rugosa	Rorug02G0603000 Rorug02G0603100
rosa_samantha	Rh3AG003300 Rh3BG002800 Rh3CG003100 Rh3DG003100
rosa_wichuraiana	Rw3G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
Acc36I	ACCTGC	4 cut(s)	1738, 1763, 2188, 2689
AccI	GTMKAC	6 cut(s)	312, 650, 746, 2507, 3348, 3910
AccIII	TCCGGA	1 cut(s)	3878
AciI	CCGC	9 cut(s)	251, 378, 582, 914, 2142, 2578, 3127, 3344, 3550
AclWI	GGATC	8 cut(s)	29, 41, 1037, 2043, 2898, 3158, 3473, 3526
AcoI	YGGCCR	1 cut(s)	2829
AcuI	CTGAAG	1 cut(s)	3642
AcvI	CACGTG	1 cut(s)	2393
AfiI	CCNNNNNNNGG	4 cut(s)	1715, 2519, 2711, 3325
AflII	CTTAAG	1 cut(s)	1096
AflIII	ACRYGT	1 cut(s)	653
AhdI	GACNNNNNGTC	1 cut(s)	1246
AjnI	CCWGG	7 cut(s)	2329, 2931, 3184, 3489, 3535, 3616, 3628
AjuI	GAANNNNNNNTTGG	2 cut(s)	3780, 3812
Alw21I	GWGCWC	1 cut(s)	2079
Alw26I	GTCTC	9 cut(s)	119, 294, 620, 1745, 2338, 2668, 3183, 3806, 3855
AlwI	GGATC	8 cut(s)	29, 41, 1037, 2043, 2898, 3158, 3473, 3526
AlwNI	CAGNNNCTG	1 cut(s)	723
Aor13HI	TCCGGA	1 cut(s)	3878
AoxI	GGCC	3 cut(s)	1453, 2829, 3061
ArsI	GACNNNNNNTTYG	2 cut(s)	2667, 2699
AseI	ATTAAT	1 cut(s)	1487
Asp700I	GAANNNNTTC	7 cut(s)	193, 501, 1224, 1323, 3063, 3091, 3750
AspA2I	CCTAGG	1 cut(s)	2705
AspLEI	GCGC	2 cut(s)	105, 3106
AspS9I	GGNCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
AsuC2I	CCSGG	1 cut(s)	3138
AsuHPI	GGTGA	7 cut(s)	830, 989, 1076, 1351, 2006, 2186, 3344
AsuNHI	GCTAGC	1 cut(s)	3020
AvaII	GGWCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
AvrII	CCTAGG	1 cut(s)	2705
BanII	GRGCYC	1 cut(s)	3930
BarI	GAAGNNNNNNTAC	2 cut(s)	1238, 1270
BbrPI	CACGTG	1 cut(s)	2393
BbsI	GAAGAC	1 cut(s)	4118
Bbv12I	GWGCWC	1 cut(s)	2079
BceAI	ACGGC	2 cut(s)	1440, 2642
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	7 cut(s)	2331, 2933, 3186, 3491, 3537, 3618, 3630
BciVI	GTATCC	1 cut(s)	3875
BclI	TGATCA	2 cut(s)	2248, 3588
BcnI	CCSGG	1 cut(s)	3138
BcoDI	GTCTC	9 cut(s)	119, 294, 620, 1745, 2338, 2668, 3183, 3806, 3855
BfmI	CTRYAG	1 cut(s)	2209
BfrI	CTTAAG	1 cut(s)	1096
BfuAI	ACCTGC	4 cut(s)	1738, 1763, 2188, 2689
BfuI	GTATCC	1 cut(s)	3875
BglI	GCCNNNNNGGC	1 cut(s)	1016
BglII	AGATCT	1 cut(s)	2375
BlnI	CCTAGG	1 cut(s)	2705
BmcAI	AGTACT	1 cut(s)	2803
Bme1390I	CCNGG	8 cut(s)	2331, 2933, 3138, 3186, 3491, 3537, 3618, 3630
Bme18I	GGWCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
BmeRI	GACNNNNNGTC	1 cut(s)	1246
BmgT120I	GGNCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
BmiI	GGNNCC	7 cut(s)	6, 222, 526, 1890, 2335, 2703, 3956
BmrFI	CCNGG	8 cut(s)	2331, 2933, 3138, 3186, 3491, 3537, 3618, 3630
BmrI	ACTGGG	1 cut(s)	2550
BmsI	GCATC	6 cut(s)	79, 244, 313, 1269, 2848, 3559
BmtI	GCTAGC	1 cut(s)	3024
BmuI	ACTGGG	1 cut(s)	2550
BpiI	GAAGAC	1 cut(s)	4118
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	2 cut(s)	1668, 3207
Bpu10I	CCTNAGC	1 cut(s)	2763
BpuEI	CTTGAG	2 cut(s)	298, 644
BpuMI	CCSGG	1 cut(s)	3138
Bsa29I	ATCGAT	2 cut(s)	1361, 1608
BsaAI	YACGTR	3 cut(s)	954, 2393, 4080
BsaBI	GATNNNNATC	1 cut(s)	3805
BsaI	GGTCTC	2 cut(s)	1745, 2338
BsaWI	WCCGGW	1 cut(s)	3878
BsaXI	ACNNNNNCTCC	6 cut(s)	682, 712, 2388, 2418, 3720, 3750
Bsc4I	CCNNNNNNNGG	4 cut(s)	1715, 2519, 2711, 3325
Bse3DI	GCAATG	2 cut(s)	1257, 2372
Bse8I	GATNNNNATC	1 cut(s)	3805
BseAI	TCCGGA	1 cut(s)	3878
BseBI	CCWGG	7 cut(s)	2331, 2933, 3186, 3491, 3537, 3618, 3630
BseCI	ATCGAT	2 cut(s)	1361, 1608
BseJI	GATNNNNATC	1 cut(s)	3805
BseLI	CCNNNNNNNGG	4 cut(s)	1715, 2519, 2711, 3325
BseMI	GCAATG	2 cut(s)	1257, 2372
BseMII	CTCAG	7 cut(s)	669, 1488, 2115, 2754, 3519, 3801, 4136
BseRI	GAGGAG	3 cut(s)	1763, 2502, 3233
BseYI	CCCAGC	2 cut(s)	33, 723
BsgI	GTGCAG	1 cut(s)	3437
Bsh1285I	CGRYCG	2 cut(s)	1059, 3127
BshFI	GGCC	3 cut(s)	1455, 2831, 3063
BshVI	ATCGAT	2 cut(s)	1361, 1608
BsiEI	CGRYCG	2 cut(s)	1059, 3127
BsiHKAI	GWGCWC	1 cut(s)	2079
BsiSI	CCGG	3 cut(s)	2828, 3137, 3879
BslFI	GGGAC	5 cut(s)	510, 1552, 1949, 2347, 2687
BslI	CCNNNNNNNGG	4 cut(s)	1715, 2519, 2711, 3325
BsmAI	GTCTC	9 cut(s)	119, 294, 620, 1745, 2338, 2668, 3183, 3806, 3855
BsmBI	CGTCTC	1 cut(s)	2668
BsmFI	GGGAC	5 cut(s)	510, 1552, 1949, 2347, 2687
BsmI	GAATGC	6 cut(s)	455, 1758, 2119, 2194, 2886, 3314
BsnI	GGCC	3 cut(s)	1455, 2831, 3063
Bso31I	GGTCTC	2 cut(s)	1745, 2338
Bsp1286I	GDGCHC	2 cut(s)	2079, 3930
Bsp13I	TCCGGA	1 cut(s)	3878
Bsp1407I	TGTACA	2 cut(s)	2452, 3603
BspACI	CCGC	9 cut(s)	251, 378, 582, 914, 2142, 2578, 3127, 3344, 3550
BspANI	GGCC	3 cut(s)	1455, 2831, 3063
BspCNI	CTCAG	7 cut(s)	670, 1487, 2116, 2755, 3520, 3802, 4137
BspDI	ATCGAT	2 cut(s)	1361, 1608
BspEI	TCCGGA	1 cut(s)	3878
BspHI	TCATGA	2 cut(s)	1798, 3475
BspLI	GGNNCC	7 cut(s)	6, 222, 526, 1890, 2335, 2703, 3956
BspMI	ACCTGC	4 cut(s)	1738, 1763, 2188, 2689
BspOI	GCTAGC	1 cut(s)	3024
BspPI	GGATC	8 cut(s)	29, 41, 1037, 2043, 2898, 3158, 3473, 3526
BspTI	CTTAAG	1 cut(s)	1096
BspTNI	GGTCTC	2 cut(s)	1745, 2338
BsrDI	GCAATG	2 cut(s)	1257, 2372
BsrGI	TGTACA	2 cut(s)	2452, 3603
BssNAI	GTATAC	5 cut(s)	651, 747, 2508, 3349, 3911
BssT1I	CCWWGG	4 cut(s)	234, 2499, 2705, 3825
Bst1107I	GTATAC	5 cut(s)	651, 747, 2508, 3349, 3911
Bst2UI	CCWGG	7 cut(s)	2331, 2933, 3186, 3491, 3537, 3618, 3630
Bst6I	CTCTTC	2 cut(s)	1365, 1590
BstAFI	CTTAAG	1 cut(s)	1096
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstAUI	TGTACA	2 cut(s)	2452, 3603
BstBAI	YACGTR	3 cut(s)	954, 2393, 4080
BstDSI	CCRYGG	1 cut(s)	814
BstEII	GGTNACC	1 cut(s)	467
BstHHI	GCGC	2 cut(s)	105, 3106
BstMAI	GTCTC	9 cut(s)	119, 294, 620, 1745, 2338, 2668, 3183, 3806, 3855
BstMCI	CGRYCG	2 cut(s)	1059, 3127
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 911, 1016, 2764, 3112, 3427
BstNI	CCWGG	7 cut(s)	2331, 2933, 3186, 3491, 3537, 3618, 3630
BstNSI	RCATGY	5 cut(s)	461, 657, 753, 1836, 3523
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	8 cut(s)	2329, 2931, 3136, 3184, 3489, 3535, 3616, 3628
BstSFI	CTRYAG	1 cut(s)	2209
BstV2I	GAAGAC	1 cut(s)	4118
BstX2I	RGATCY	2 cut(s)	2375, 3531
BstXI	CCANNNNNNTGG	3 cut(s)	217, 1622, 3174
BstYI	RGATCY	2 cut(s)	2375, 3531
BstZ17I	GTATAC	5 cut(s)	651, 747, 2508, 3349, 3911
Bsu15I	ATCGAT	2 cut(s)	1361, 1608
BsuI	GTATCC	1 cut(s)	3875
BsuRI	GGCC	3 cut(s)	1455, 2831, 3063
BsuTUI	ATCGAT	2 cut(s)	1361, 1608
BtgI	CCRYGG	1 cut(s)	814
BveI	ACCTGC	4 cut(s)	1738, 1763, 2188, 2689
CaiI	CAGNNNCTG	1 cut(s)	723
CciI	TCATGA	2 cut(s)	1798, 3475
CfoI	GCGC	2 cut(s)	105, 3106
Cfr13I	GGNCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
ClaI	ATCGAT	2 cut(s)	1361, 1608
CseI	GACGC	2 cut(s)	729, 2685
CspCI	CAANNNNNGTGG	2 cut(s)	2152, 2187
DraI	TTTAAA	1 cut(s)	1726
DrdI	GACNNNNNNGTC	1 cut(s)	308
DriI	GACNNNNNGTC	1 cut(s)	1246
DseDI	GACNNNNNNGTC	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	2829
Eam1104I	CTCTTC	2 cut(s)	1365, 1590
Eam1105I	GACNNNNNGTC	1 cut(s)	1246
EarI	CTCTTC	2 cut(s)	1365, 1590
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	4 cut(s)	234, 2499, 2705, 3825
Eco147I	AGGCCT	1 cut(s)	3063
Eco24I	GRGCYC	1 cut(s)	3930
Eco31I	GGTCTC	2 cut(s)	1745, 2338
Eco32I	GATATC	1 cut(s)	1606
Eco47I	GGWCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
Eco57I	CTGAAG	1 cut(s)	3642
Eco72I	CACGTG	1 cut(s)	2393
Eco91I	GGTNACC	1 cut(s)	467
EcoO109I	RGGNCCY	2 cut(s)	2701, 2929
EcoO65I	GGTNACC	1 cut(s)	467
EcoRI	GAATTC	2 cut(s)	637, 2238
EcoRII	CCWGG	7 cut(s)	2329, 2931, 3184, 3489, 3535, 3616, 3628
EcoRV	GATATC	1 cut(s)	1606
EcoT14I	CCWWGG	4 cut(s)	234, 2499, 2705, 3825
EcoT22I	ATGCAT	2 cut(s)	2841, 3999
EcoT38I	GRGCYC	1 cut(s)	3930
ErhI	CCWWGG	4 cut(s)	234, 2499, 2705, 3825
Esp3I	CGTCTC	1 cut(s)	2668
FalI	AAGNNNNNCTT	4 cut(s)	1079, 1111, 2600, 2632
FaqI	GGGAC	5 cut(s)	510, 1552, 1949, 2347, 2687
FauI	CCCGC	1 cut(s)	385
FauNDI	CATATG	3 cut(s)	180, 478, 3397
FbaI	TGATCA	2 cut(s)	2248, 3588
FblI	GTMKAC	6 cut(s)	312, 650, 746, 2507, 3348, 3910
FriOI	GRGCYC	1 cut(s)	3930
GlaI	GCGC	2 cut(s)	104, 3105
GsaI	CCCAGC	2 cut(s)	37, 727
GsuI	CTGGAG	2 cut(s)	1668, 3207
HaeIII	GGCC	3 cut(s)	1455, 2831, 3063
HapII	CCGG	3 cut(s)	2828, 3137, 3879
HgaI	GACGC	2 cut(s)	729, 2685
HhaI	GCGC	2 cut(s)	105, 3106
Hin6I	GCGC	2 cut(s)	103, 3104
HinP1I	GCGC	2 cut(s)	103, 3104
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	3 cut(s)	1842, 3113, 4098
HpaII	CCGG	3 cut(s)	2828, 3137, 3879
HphI	GGTGA	7 cut(s)	830, 989, 1076, 1351, 2006, 2186, 3344
HpyCH4IV	ACGT	5 cut(s)	953, 1383, 2392, 3913, 4079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 911, 1016, 2764, 3112, 3427
HpySE526I	ACGT	5 cut(s)	953, 1383, 2392, 3913, 4079
HspAI	GCGC	2 cut(s)	103, 3104
Kpn2I	TCCGGA	1 cut(s)	3878
Ksp22I	TGATCA	2 cut(s)	2248, 3588
LmnI	GCTCC	8 cut(s)	168, 189, 1649, 1738, 2331, 3528, 3960, 3970
LweI	GCATC	6 cut(s)	79, 244, 313, 1269, 2848, 3559
MaeII	ACGT	5 cut(s)	953, 1383, 2392, 3913, 4079
MaeIII	GTNAC	8 cut(s)	68, 467, 513, 1069, 2224, 3322, 3777, 4075
MfeI	CAATTG	1 cut(s)	764
MflI	RGATCY	2 cut(s)	2375, 3531
MhlI	GDGCHC	2 cut(s)	2079, 3930
MlyI	GAGTC	5 cut(s)	318, 367, 1574, 3499, 3857
MmeI	TCCRAC	1 cut(s)	2942
Mph1103I	ATGCAT	2 cut(s)	2841, 3999
MroI	TCCGGA	1 cut(s)	3878
MroXI	GAANNNNTTC	7 cut(s)	193, 501, 1224, 1323, 3063, 3091, 3750
MslI	CAYNNNNRTG	4 cut(s)	477, 2027, 2187, 4177
MspA1I	CMGCKG	2 cut(s)	2142, 3550
MspCI	CTTAAG	1 cut(s)	1096
MspI	CCGG	3 cut(s)	2828, 3137, 3879
MspR9I	CCNGG	8 cut(s)	2331, 2933, 3138, 3186, 3491, 3537, 3618, 3630
MunI	CAATTG	1 cut(s)	764
Mva1269I	GAATGC	6 cut(s)	455, 1758, 2119, 2194, 2886, 3314
MvaI	CCWGG	7 cut(s)	2331, 2933, 3186, 3491, 3537, 3618, 3630
MwoI	GCNNNNNNNGC	6 cut(s)	89, 911, 1016, 2764, 3112, 3427
NciI	CCSGG	1 cut(s)	3138
NdeI	CATATG	3 cut(s)	180, 478, 3397
NheI	GCTAGC	1 cut(s)	3020
NlaIV	GGNNCC	7 cut(s)	6, 222, 526, 1890, 2335, 2703, 3956
NmuCI	GTSAC	4 cut(s)	1069, 2224, 3322, 4075
NsiI	ATGCAT	2 cut(s)	2841, 3999
NspI	RCATGY	5 cut(s)	461, 657, 753, 1836, 3523
PaeI	GCATGC	1 cut(s)	1836
PagI	TCATGA	2 cut(s)	1798, 3475
PasI	CCCWGGG	1 cut(s)	2330
PceI	AGGCCT	1 cut(s)	3063
PciI	ACATGT	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	1 cut(s)	2683
PctI	GAATGC	6 cut(s)	455, 1758, 2119, 2194, 2886, 3314
PdmI	GAANNNNTTC	7 cut(s)	193, 501, 1224, 1323, 3063, 3091, 3750
PfoI	TCCNGGA	1 cut(s)	2931
Ple19I	CGATCG	1 cut(s)	1059
PleI	GAGTC	5 cut(s)	317, 367, 1573, 3499, 3856
PmaCI	CACGTG	1 cut(s)	2393
PmlI	CACGTG	1 cut(s)	2393
PpsI	GAGTC	5 cut(s)	317, 367, 1573, 3499, 3856
Ppu21I	YACGTR	3 cut(s)	954, 2393, 4080
PpuMI	RGGWCCY	2 cut(s)	2701, 2929
PscI	ACATGT	1 cut(s)	653
PshBI	ATTAAT	1 cut(s)	1487
Psp5II	RGGWCCY	2 cut(s)	2701, 2929
Psp6I	CCWGG	7 cut(s)	2329, 2931, 3184, 3489, 3535, 3616, 3628
PspCI	CACGTG	1 cut(s)	2393
PspEI	GGTNACC	1 cut(s)	467
PspFI	CCCAGC	2 cut(s)	33, 723
PspGI	CCWGG	7 cut(s)	2329, 2931, 3184, 3489, 3535, 3616, 3628
PspN4I	GGNNCC	7 cut(s)	6, 222, 526, 1890, 2335, 2703, 3956
PspPI	GGNCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
PspPPI	RGGWCCY	2 cut(s)	2701, 2929
PstNI	CAGNNNCTG	1 cut(s)	723
PsuI	RGATCY	2 cut(s)	2375, 3531
PvuI	CGATCG	1 cut(s)	1059
RseI	CAYNNNNRTG	4 cut(s)	477, 2027, 2187, 4177
SalI	GTCGAC	1 cut(s)	311
Sau96I	GGNCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
ScaI	AGTACT	1 cut(s)	2803
SchI	GAGTC	5 cut(s)	318, 367, 1574, 3499, 3857
ScrFI	CCNGG	8 cut(s)	2331, 2933, 3138, 3186, 3491, 3537, 3618, 3630
SduI	GDGCHC	2 cut(s)	2079, 3930
SfaNI	GCATC	6 cut(s)	79, 244, 313, 1269, 2848, 3559
SfcI	CTRYAG	1 cut(s)	2209
SinI	GGWCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
SmiMI	CAYNNNNRTG	4 cut(s)	477, 2027, 2187, 4177
SmlI	CTYRAG	3 cut(s)	277, 623, 1096
SmoI	CTYRAG	3 cut(s)	277, 623, 1096
SphI	GCATGC	1 cut(s)	1836
SseBI	AGGCCT	1 cut(s)	3063
SsiI	CCGC	9 cut(s)	251, 378, 582, 914, 2142, 2578, 3127, 3344, 3550
SspI	AATATT	1 cut(s)	546
StuI	AGGCCT	1 cut(s)	3063
StyD4I	CCNGG	8 cut(s)	2329, 2931, 3136, 3184, 3489, 3535, 3616, 3628
StyI	CCWWGG	4 cut(s)	234, 2499, 2705, 3825
TaiI	ACGT	5 cut(s)	956, 1386, 2395, 3916, 4082
TatI	WGTACW	7 cut(s)	1254, 2019, 2452, 2477, 2801, 2854, 3603
TauI	GCSGC	2 cut(s)	917, 2581
TseFI	GTSAC	4 cut(s)	1069, 2224, 3322, 4075
Tsp45I	GTSAC	4 cut(s)	1069, 2224, 3322, 4075
TspGWI	ACGGA	1 cut(s)	1892
Vha464I	CTTAAG	1 cut(s)	1096
VpaK11BI	GGWCC	6 cut(s)	524, 811, 2334, 2701, 2929, 3200
VspI	ATTAAT	1 cut(s)	1487
XbaI	TCTAGA	1 cut(s)	1201
XceI	RCATGY	5 cut(s)	461, 657, 753, 1836, 3523
XcmI	CCANNNNNNNNNTGG	3 cut(s)	118, 2467, 2929
XmaJI	CCTAGG	1 cut(s)	2705
XmiI	GTMKAC	6 cut(s)	312, 650, 746, 2507, 3348, 3910
XmnI	GAANNNNTTC	7 cut(s)	193, 501, 1224, 1323, 3063, 3091, 3750
ZrmI	AGTACT	1 cut(s)	2803
Zsp2I	ATGCAT	2 cut(s)	2841, 3999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.