Belongs to the helicase family. Dicer subfamily
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 20 - 162 | 3.1e-11 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 21 - 154 | 1.5e-12 | DEAD/DEAH box helicase |
| Dicer_dimer | PF03368 | 493 - 544 | 4.3e-07 | Dicer dimerisation domain |
| PAZ | PF02170 | 748 - 840 | 6.2e-07 | PAZ domain |
| Ribonuclease_3 | PF00636 | 877 - 995 | 2.1e-20 | Ribonuclease III domain |
| Ribonucleas_3_3 | PF14622 | 1035 - 1168 | 1.5e-11 | Ribonuclease-III-like |
| Ribonuclease_3 | PF00636 | 1059 - 1168 | 1.1e-19 | Ribonuclease III domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1674 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 302 |
| AbsI | CCTCGAGG | 1 cut(s) | 2522 |
| Acc16I | TGCGCA | 1 cut(s) | 2367 |
| Acc36I | ACCTGC | 5 cut(s) | 43, 1471, 1496, 1921, 2365 |
| AccI | GTMKAC | 4 cut(s) | 306, 662, 3535, 3863 |
| AciI | CCGC | 2 cut(s) | 1380, 3927 |
| AcoI | YGGCCR | 1 cut(s) | 1780 |
| AcsI | RAATTY | 7 cut(s) | 553, 935, 1133, 1285, 1865, 1971, 3182 |
| AcuI | CTGAAG | 1 cut(s) | 2273 |
| AfaI | GTAC | 7 cut(s) | 1273, 2076, 2207, 2479, 2532, 2853, 3002 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1276, 2387, 3917 |
| AflII | CTTAAG | 1 cut(s) | 158 |
| AflIII | ACRYGT | 2 cut(s) | 569, 2107 |
| AgeI | ACCGGT | 1 cut(s) | 2978 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1159, 1617 |
| AhlI | ACTAGT | 1 cut(s) | 3218 |
| AjiI | CACGTC | 2 cut(s) | 2129, 2577 |
| AjnI | CCWGG | 8 cut(s) | 1782, 2062, 2634, 2836, 3160, 3241, 3253, 3449 |
| AleI | CACNNNNGTG | 1 cut(s) | 107 |
| Alw21I | GWGCWC | 3 cut(s) | 180, 2576, 3790 |
| Alw44I | GTGCAC | 1 cut(s) | 2572 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3725, 3935 |
| Ama87I | CYCGRG | 2 cut(s) | 2522, 3306 |
| AoxI | GGCC | 5 cut(s) | 1267, 1780, 1813, 2067, 2713 |
| ApaLI | GTGCAC | 1 cut(s) | 2572 |
| ApoI | RAATTY | 7 cut(s) | 553, 935, 1133, 1285, 1865, 1971, 3182 |
| AseI | ATTAAT | 2 cut(s) | 1301, 1797 |
| AsiGI | ACCGGT | 1 cut(s) | 2978 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 187, 1137, 2010, 2715, 2743, 3876 |
| AspA2I | CCTAGG | 1 cut(s) | 2381 |
| AspLEI | GCGC | 3 cut(s) | 99, 2368, 3948 |
| AspS9I | GGNCC | 5 cut(s) | 727, 837, 2067, 2377, 3771 |
| AsuC2I | CCSGG | 1 cut(s) | 2790 |
| AsuHPI | GGTGA | 8 cut(s) | 502, 746, 905, 2454, 2510, 2768, 2996, 3823 |
| AsuII | TTCGAA | 2 cut(s) | 557, 3651 |
| AsuNHI | GCTAGC | 1 cut(s) | 2672 |
| AvaI | CYCGRG | 2 cut(s) | 2522, 3306 |
| AvaII | GGWCC | 4 cut(s) | 727, 837, 2377, 3771 |
| AvrII | CCTAGG | 1 cut(s) | 2381 |
| AxyI | CCTNAGG | 1 cut(s) | 1817 |
| BaeGI | GKGCMC | 1 cut(s) | 2576 |
| BalI | TGGCCA | 1 cut(s) | 1782 |
| BamHI | GGATCC | 2 cut(s) | 4, 1009 |
| BanII | GRGCYC | 1 cut(s) | 3555 |
| BbsI | GAAGAC | 1 cut(s) | 199 |
| Bbv12I | GWGCWC | 3 cut(s) | 180, 2576, 3790 |
| BccI | CCATC | 8 cut(s) | 456, 658, 961, 1923, 2512, 3420, 3591, 3820 |
| BceAI | ACGGC | 3 cut(s) | 1254, 2281, 3753 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 848, 882 |
| BciT130I | CCWGG | 8 cut(s) | 1784, 2064, 2636, 2838, 3162, 3243, 3255, 3451 |
| BclI | TGATCA | 3 cut(s) | 1981, 2704, 3213 |
| BcnI | CCSGG | 1 cut(s) | 2790 |
| BcuI | ACTAGT | 1 cut(s) | 3218 |
| BfmI | CTRYAG | 1 cut(s) | 105 |
| BfrI | CTTAAG | 1 cut(s) | 158 |
| BfuAI | ACCTGC | 5 cut(s) | 43, 1471, 1496, 1921, 2365 |
| BlnI | CCTAGG | 1 cut(s) | 2381 |
| BmcAI | AGTACT | 1 cut(s) | 2479 |
| Bme1390I | CCNGG | 9 cut(s) | 1784, 2064, 2636, 2790, 2838, 3162, 3243, 3255, 3451 |
| Bme18I | GGWCC | 4 cut(s) | 727, 837, 2377, 3771 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1159, 1617 |
| BmeT110I | CYCGRG | 2 cut(s) | 2522, 3306 |
| BmgBI | CACGTC | 2 cut(s) | 2129, 2577 |
| BmgT120I | GGNCC | 5 cut(s) | 727, 837, 2067, 2377, 3771 |
| BmiI | GGNNCC | 5 cut(s) | 6, 216, 1011, 2068, 2379 |
| BmrFI | CCNGG | 9 cut(s) | 1784, 2064, 2636, 2790, 2838, 3162, 3243, 3255, 3451 |
| BmsI | GCATC | 9 cut(s) | 73, 238, 249, 307, 1720, 2123, 2342, 2524, 3705 |
| BmtI | GCTAGC | 1 cut(s) | 2676 |
| BpiI | GAAGAC | 1 cut(s) | 199 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 110, 142 |
| BpmI | CTGGAG | 4 cut(s) | 1926, 2657, 2859, 3549 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2439 |
| Bpu14I | TTCGAA | 2 cut(s) | 557, 3651 |
| BpuEI | CTTGAG | 2 cut(s) | 292, 560 |
| BpuMI | CCSGG | 1 cut(s) | 2790 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3430 |
| BsaI | GGTCTC | 2 cut(s) | 1478, 2077 |
| BsaWI | WCCGGW | 2 cut(s) | 2978, 3064 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 598, 628, 901, 931, 966, 996 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1276, 2387, 3917 |
| Bse118I | RCCGGY | 1 cut(s) | 2978 |
| Bse1I | ACTGG | 5 cut(s) | 84, 127, 1022, 1160, 3885 |
| Bse21I | CCTNAGG | 1 cut(s) | 1817 |
| Bse3DI | GCAATG | 1 cut(s) | 1170 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3430 |
| BseBI | CCWGG | 8 cut(s) | 1784, 2064, 2636, 2838, 3162, 3243, 3255, 3451 |
| BseGI | GGATG | 8 cut(s) | 88, 322, 445, 1483, 3252, 3431, 3583, 3696 |
| BseJI | GATNNNNATC | 1 cut(s) | 3430 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1276, 2387, 3917 |
| BseMI | GCAATG | 1 cut(s) | 1170 |
| BseMII | CTCAG | 9 cut(s) | 585, 1737, 1808, 1848, 2272, 2430, 3144, 3426, 3881 |
| BseNI | ACTGG | 5 cut(s) | 84, 127, 1022, 1160, 3885 |
| BseRI | GAGGAG | 3 cut(s) | 1694, 1834, 2885 |
| BseSI | GKGCMC | 1 cut(s) | 2576 |
| BseYI | CCCAGC | 1 cut(s) | 27 |
| BsgI | GTGCAG | 1 cut(s) | 3089 |
| BshFI | GGCC | 5 cut(s) | 1269, 1782, 1815, 2069, 2715 |
| BshTI | ACCGGT | 1 cut(s) | 2978 |
| BsiHKAI | GWGCWC | 3 cut(s) | 180, 2576, 3790 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2522, 3306 |
| BsiSI | CCGG | 3 cut(s) | 2789, 2979, 3065 |
| BslFI | GGGAC | 4 cut(s) | 1387, 1682, 2363, 3206 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1276, 2387, 3917 |
| BsmFI | GGGAC | 4 cut(s) | 1387, 1682, 2363, 3206 |
| BsmI | GAATGC | 5 cut(s) | 1491, 1852, 1927, 2562, 2966 |
| BsnI | GGCC | 5 cut(s) | 1269, 1782, 1815, 2069, 2715 |
| Bso31I | GGTCTC | 2 cut(s) | 1478, 2077 |
| BsoBI | CYCGRG | 2 cut(s) | 2522, 3306 |
| Bsp119I | TTCGAA | 2 cut(s) | 557, 3651 |
| Bsp1286I | GDGCHC | 4 cut(s) | 180, 2576, 3555, 3790 |
| BspACI | CCGC | 2 cut(s) | 1380, 3927 |
| BspANI | GGCC | 5 cut(s) | 1269, 1782, 1815, 2069, 2715 |
| BspCNI | CTCAG | 9 cut(s) | 586, 1736, 1809, 1849, 2271, 2431, 3145, 3427, 3880 |
| BspHI | TCATGA | 2 cut(s) | 2707, 3006 |
| BspLI | GGNNCC | 5 cut(s) | 6, 216, 1011, 2068, 2379 |
| BspMI | ACCTGC | 5 cut(s) | 43, 1471, 1496, 1921, 2365 |
| BspOI | GCTAGC | 1 cut(s) | 2676 |
| BspT104I | TTCGAA | 2 cut(s) | 557, 3651 |
| BspTI | CTTAAG | 1 cut(s) | 158 |
| BspTNI | GGTCTC | 2 cut(s) | 1478, 2077 |
| BsrDI | GCAATG | 1 cut(s) | 1170 |
| BsrFI | RCCGGY | 1 cut(s) | 2978 |
| BsrI | ACTGG | 5 cut(s) | 84, 127, 1022, 1160, 3885 |
| BssAI | RCCGGY | 1 cut(s) | 2978 |
| BssNAI | GTATAC | 2 cut(s) | 663, 3536 |
| BssT1I | CCWWGG | 3 cut(s) | 730, 2227, 2381 |
| Bst1107I | GTATAC | 2 cut(s) | 663, 3536 |
| Bst2UI | CCWGG | 8 cut(s) | 1784, 2064, 2636, 2838, 3162, 3243, 3255, 3451 |
| Bst4CI | ACNGT | 6 cut(s) | 586, 1260, 1888, 2196, 2334, 3385 |
| Bst6I | CTCTTC | 3 cut(s) | 1425, 1476, 3117 |
| BstAFI | CTTAAG | 1 cut(s) | 158 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 83, 3935 |
| BstBI | TTCGAA | 2 cut(s) | 557, 3651 |
| BstF5I | GGATG | 8 cut(s) | 88, 322, 445, 1483, 3252, 3431, 3583, 3696 |
| BstHHI | GCGC | 3 cut(s) | 99, 2368, 3948 |
| BstNI | CCWGG | 8 cut(s) | 1784, 2064, 2636, 2838, 3162, 3243, 3255, 3451 |
| BstNSI | RCATGY | 3 cut(s) | 573, 669, 3148 |
| BstSCI | CCNGG | 9 cut(s) | 1782, 2062, 2634, 2788, 2836, 3160, 3241, 3253, 3449 |
| BstSFI | CTRYAG | 1 cut(s) | 105 |
| BstSLI | GKGCMC | 1 cut(s) | 2576 |
| BstV2I | GAAGAC | 1 cut(s) | 199 |
| BstX2I | RGATCY | 4 cut(s) | 4, 1009, 1911, 3156 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2826 |
| BstYI | RGATCY | 4 cut(s) | 4, 1009, 1911, 3156 |
| BstZ17I | GTATAC | 2 cut(s) | 663, 3536 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1817 |
| BsuRI | GGCC | 5 cut(s) | 1269, 1782, 1815, 2069, 2715 |
| BtrI | CACGTC | 2 cut(s) | 2129, 2577 |
| BtsCI | GGATG | 8 cut(s) | 88, 322, 445, 1483, 3252, 3431, 3583, 3696 |
| BtsI | GCAGTG | 3 cut(s) | 847, 1239, 1747 |
| BtsIMutI | CAGTG | 9 cut(s) | 77, 847, 1239, 1747, 1893, 2201, 2266, 2576, 3892 |
| BveI | ACCTGC | 5 cut(s) | 43, 1471, 1496, 1921, 2365 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3725, 3935 |
| CciI | TCATGA | 2 cut(s) | 2707, 3006 |
| CfoI | GCGC | 3 cut(s) | 99, 2368, 3948 |
| Cfr10I | RCCGGY | 1 cut(s) | 2978 |
| Cfr13I | GGNCC | 5 cut(s) | 727, 837, 2067, 2377, 3771 |
| CseI | GACGC | 2 cut(s) | 3203, 3812 |
| Csp6I | GTAC | 7 cut(s) | 1272, 2075, 2206, 2478, 2531, 2852, 3001 |
| CspAI | ACCGGT | 1 cut(s) | 2978 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3658, 3693 |
| CviQI | GTAC | 7 cut(s) | 1272, 2075, 2206, 2478, 2531, 2852, 3001 |
| DraI | TTTAAA | 2 cut(s) | 409, 1459 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 302 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1159, 1617 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 302 |
| EaeI | YGGCCR | 1 cut(s) | 1780 |
| Eam1104I | CTCTTC | 3 cut(s) | 1425, 1476, 3117 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1159, 1617 |
| EarI | CTCTTC | 3 cut(s) | 1425, 1476, 3117 |
| Eco130I | CCWWGG | 3 cut(s) | 730, 2227, 2381 |
| Eco147I | AGGCCT | 1 cut(s) | 2715 |
| Eco24I | GRGCYC | 1 cut(s) | 3555 |
| Eco31I | GGTCTC | 2 cut(s) | 1478, 2077 |
| Eco47I | GGWCC | 4 cut(s) | 727, 837, 2377, 3771 |
| Eco57I | CTGAAG | 1 cut(s) | 2273 |
| Eco81I | CCTNAGG | 1 cut(s) | 1817 |
| Eco88I | CYCGRG | 2 cut(s) | 2522, 3306 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2377, 3771 |
| EcoRI | GAATTC | 2 cut(s) | 553, 1971 |
| EcoRII | CCWGG | 8 cut(s) | 1782, 2062, 2634, 2836, 3160, 3241, 3253, 3449 |
| EcoT14I | CCWWGG | 3 cut(s) | 730, 2227, 2381 |
| EcoT22I | ATGCAT | 4 cut(s) | 1430, 2357, 2517, 3624 |
| EcoT38I | GRGCYC | 1 cut(s) | 3555 |
| ErhI | CCWWGG | 3 cut(s) | 730, 2227, 2381 |
| FaqI | GGGAC | 4 cut(s) | 1387, 1682, 2363, 3206 |
| FauNDI | CATATG | 2 cut(s) | 472, 2422 |
| FbaI | TGATCA | 3 cut(s) | 1981, 2704, 3213 |
| FblI | GTMKAC | 4 cut(s) | 306, 662, 3535, 3863 |
| FokI | GGATG | 8 cut(s) | 95, 329, 452, 1490, 3259, 3438, 3570, 3683 |
| FriOI | GRGCYC | 1 cut(s) | 3555 |
| FspI | TGCGCA | 1 cut(s) | 2367 |
| GlaI | GCGC | 3 cut(s) | 98, 2367, 3947 |
| GsaI | CCCAGC | 1 cut(s) | 31 |
| GsuI | CTGGAG | 4 cut(s) | 1926, 2657, 2859, 3549 |
| HaeIII | GGCC | 5 cut(s) | 1269, 1782, 1815, 2069, 2715 |
| HapII | CCGG | 3 cut(s) | 2789, 2979, 3065 |
| HgaI | GACGC | 2 cut(s) | 3203, 3812 |
| HhaI | GCGC | 3 cut(s) | 99, 2368, 3948 |
| Hin6I | GCGC | 3 cut(s) | 97, 2366, 3946 |
| HinP1I | GCGC | 3 cut(s) | 97, 2366, 3946 |
| HincII | GTYRAC | 2 cut(s) | 307, 3864 |
| HindII | GTYRAC | 2 cut(s) | 307, 3864 |
| HindIII | AAGCTT | 3 cut(s) | 1578, 1716, 2765 |
| HpaII | CCGG | 3 cut(s) | 2789, 2979, 3065 |
| HphI | GGTGA | 8 cut(s) | 502, 746, 905, 2454, 2510, 2768, 2996, 3823 |
| HpyCH4III | ACNGT | 6 cut(s) | 586, 1260, 1888, 2196, 2334, 3385 |
| HpyCH4IV | ACGT | 4 cut(s) | 2107, 2128, 2576, 3538 |
| HpySE526I | ACGT | 4 cut(s) | 2107, 2128, 2576, 3538 |
| HspAI | GCGC | 3 cut(s) | 97, 2366, 3946 |
| Ksp22I | TGATCA | 3 cut(s) | 1981, 2704, 3213 |
| LmnI | GCTCC | 6 cut(s) | 183, 1471, 1681, 3153, 3890, 3913 |
| LweI | GCATC | 9 cut(s) | 73, 238, 249, 307, 1720, 2123, 2342, 2524, 3705 |
| MaeII | ACGT | 4 cut(s) | 2107, 2128, 2576, 3538 |
| MaeIII | GTNAC | 6 cut(s) | 1036, 2261, 2460, 2774, 2801, 3402 |
| MfeI | CAATTG | 2 cut(s) | 680, 1107 |
| MflI | RGATCY | 4 cut(s) | 4, 1009, 1911, 3156 |
| MhlI | GDGCHC | 4 cut(s) | 180, 2576, 3555, 3790 |
| MlsI | TGGCCA | 1 cut(s) | 1782 |
| MluNI | TGGCCA | 1 cut(s) | 1782 |
| MlyI | GAGTC | 7 cut(s) | 312, 361, 1409, 2648, 3267, 3482, 3859 |
| MmeI | TCCRAC | 1 cut(s) | 2618 |
| Mox20I | TGGCCA | 1 cut(s) | 1782 |
| Mph1103I | ATGCAT | 4 cut(s) | 1430, 2357, 2517, 3624 |
| MroXI | GAANNNNTTC | 6 cut(s) | 187, 1137, 2010, 2715, 2743, 3876 |
| MscI | TGGCCA | 1 cut(s) | 1782 |
| MslI | CAYNNNNRTG | 4 cut(s) | 107, 471, 1920, 2173 |
| Msp20I | TGGCCA | 1 cut(s) | 1782 |
| MspA1I | CMGCKG | 3 cut(s) | 1206, 3175, 3932 |
| MspCI | CTTAAG | 1 cut(s) | 158 |
| MspI | CCGG | 3 cut(s) | 2789, 2979, 3065 |
| MspR9I | CCNGG | 9 cut(s) | 1784, 2064, 2636, 2790, 2838, 3162, 3243, 3255, 3451 |
| MunI | CAATTG | 2 cut(s) | 680, 1107 |
| Mva1269I | GAATGC | 5 cut(s) | 1491, 1852, 1927, 2562, 2966 |
| MvaI | CCWGG | 8 cut(s) | 1784, 2064, 2636, 2838, 3162, 3243, 3255, 3451 |
| NciI | CCSGG | 1 cut(s) | 2790 |
| NdeI | CATATG | 2 cut(s) | 472, 2422 |
| NheI | GCTAGC | 1 cut(s) | 2672 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 216, 1011, 2068, 2379 |
| NmuCI | GTSAC | 4 cut(s) | 1036, 2261, 2460, 2774 |
| NsbI | TGCGCA | 1 cut(s) | 2367 |
| NsiI | ATGCAT | 4 cut(s) | 1430, 2357, 2517, 3624 |
| NspI | RCATGY | 3 cut(s) | 573, 669, 3148 |
| NspV | TTCGAA | 2 cut(s) | 557, 3651 |
| OliI | CACNNNNGTG | 1 cut(s) | 107 |
| PaeR7I | CTCGAG | 1 cut(s) | 2522 |
| PagI | TCATGA | 2 cut(s) | 2707, 3006 |
| PasI | CCCWGGG | 1 cut(s) | 3450 |
| PceI | AGGCCT | 1 cut(s) | 2715 |
| PciI | ACATGT | 1 cut(s) | 569 |
| PctI | GAATGC | 5 cut(s) | 1491, 1852, 1927, 2562, 2966 |
| PdmI | GAANNNNTTC | 6 cut(s) | 187, 1137, 2010, 2715, 2743, 3876 |
| PinAI | ACCGGT | 1 cut(s) | 2978 |
| PleI | GAGTC | 7 cut(s) | 311, 361, 1408, 2647, 3266, 3481, 3859 |
| PpsI | GAGTC | 7 cut(s) | 311, 361, 1408, 2647, 3266, 3481, 3859 |
| PpuMI | RGGWCCY | 2 cut(s) | 2377, 3771 |
| PscI | ACATGT | 1 cut(s) | 569 |
| PshBI | ATTAAT | 2 cut(s) | 1301, 1797 |
| PsiI | TTATAA | 1 cut(s) | 1674 |
| Psp5II | RGGWCCY | 2 cut(s) | 2377, 3771 |
| Psp6I | CCWGG | 8 cut(s) | 1782, 2062, 2634, 2836, 3160, 3241, 3253, 3449 |
| PspFI | CCCAGC | 1 cut(s) | 27 |
| PspGI | CCWGG | 8 cut(s) | 1782, 2062, 2634, 2836, 3160, 3241, 3253, 3449 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 216, 1011, 2068, 2379 |
| PspPI | GGNCC | 5 cut(s) | 727, 837, 2067, 2377, 3771 |
| PspPPI | RGGWCCY | 2 cut(s) | 2377, 3771 |
| PspXI | VCTCGAGB | 1 cut(s) | 2522 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3725, 3935 |
| PsuI | RGATCY | 4 cut(s) | 4, 1009, 1911, 3156 |
| PvuII | CAGCTG | 3 cut(s) | 1206, 3175, 3932 |
| RsaI | GTAC | 7 cut(s) | 1273, 2076, 2207, 2479, 2532, 2853, 3002 |
| RsaNI | GTAC | 7 cut(s) | 1272, 2075, 2206, 2478, 2531, 2852, 3001 |
| RseI | CAYNNNNRTG | 4 cut(s) | 107, 471, 1920, 2173 |
| SalI | GTCGAC | 2 cut(s) | 305, 3862 |
| Sau96I | GGNCC | 5 cut(s) | 727, 837, 2067, 2377, 3771 |
| ScaI | AGTACT | 1 cut(s) | 2479 |
| SchI | GAGTC | 7 cut(s) | 312, 361, 1409, 2648, 3267, 3482, 3859 |
| ScrFI | CCNGG | 9 cut(s) | 1784, 2064, 2636, 2790, 2838, 3162, 3243, 3255, 3451 |
| SduI | GDGCHC | 4 cut(s) | 180, 2576, 3555, 3790 |
| SfaNI | GCATC | 9 cut(s) | 73, 238, 249, 307, 1720, 2123, 2342, 2524, 3705 |
| SfcI | CTRYAG | 1 cut(s) | 105 |
| Sfr274I | CTCGAG | 1 cut(s) | 2522 |
| SfuI | TTCGAA | 2 cut(s) | 557, 3651 |
| SinI | GGWCC | 4 cut(s) | 727, 837, 2377, 3771 |
| SlaI | CTCGAG | 1 cut(s) | 2522 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 107, 471, 1920, 2173 |
| SmlI | CTYRAG | 4 cut(s) | 158, 271, 539, 2522 |
| SmoI | CTYRAG | 4 cut(s) | 158, 271, 539, 2522 |
| SpeI | ACTAGT | 1 cut(s) | 3218 |
| SseBI | AGGCCT | 1 cut(s) | 2715 |
| SsiI | CCGC | 2 cut(s) | 1380, 3927 |
| StuI | AGGCCT | 1 cut(s) | 2715 |
| StyD4I | CCNGG | 9 cut(s) | 1782, 2062, 2634, 2788, 2836, 3160, 3241, 3253, 3449 |
| StyI | CCWWGG | 3 cut(s) | 730, 2227, 2381 |
| TaaI | ACNGT | 6 cut(s) | 586, 1260, 1888, 2196, 2334, 3385 |
| TaiI | ACGT | 4 cut(s) | 2110, 2131, 2579, 3541 |
| TaqI | TCGA | 7 cut(s) | 306, 557, 1357, 1761, 2523, 3651, 3863 |
| TatI | WGTACW | 5 cut(s) | 2074, 2205, 2477, 2530, 3000 |
| TauI | GCSGC | 1 cut(s) | 3929 |
| TscAI | CASTG | 9 cut(s) | 84, 854, 1246, 1754, 1893, 2201, 2266, 2576, 3892 |
| TseFI | GTSAC | 4 cut(s) | 1036, 2261, 2460, 2774 |
| Tsp45I | GTSAC | 4 cut(s) | 1036, 2261, 2460, 2774 |
| TspGWI | ACGGA | 2 cut(s) | 1628, 2351 |
| TspRI | CASTG | 9 cut(s) | 84, 854, 1246, 1754, 1893, 2201, 2266, 2576, 3892 |
| Vha464I | CTTAAG | 1 cut(s) | 158 |
| VneI | GTGCAC | 1 cut(s) | 2572 |
| VpaK11BI | GGWCC | 4 cut(s) | 727, 837, 2377, 3771 |
| VspI | ATTAAT | 2 cut(s) | 1301, 1797 |
| XapI | RAATTY | 7 cut(s) | 553, 935, 1133, 1285, 1865, 1971, 3182 |
| XbaI | TCTAGA | 2 cut(s) | 1262, 1448 |
| XceI | RCATGY | 3 cut(s) | 573, 669, 3148 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2195 |
| XhoI | CTCGAG | 1 cut(s) | 2522 |
| XmaJI | CCTAGG | 1 cut(s) | 2381 |
| XmiI | GTMKAC | 4 cut(s) | 306, 662, 3535, 3863 |
| XmnI | GAANNNNTTC | 6 cut(s) | 187, 1137, 2010, 2715, 2743, 3876 |
| ZrmI | AGTACT | 1 cut(s) | 2479 |
| Zsp2I | ATGCAT | 4 cut(s) | 1430, 2357, 2517, 3624 |