Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Reverse (-)

850108 .. 851741

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGTTCAACAGGAAACCCTAATCCATGGGGTACAACATACGATTCATACAGAGACTGTTCTCAAGGAGTATGCAGTGTCTATTGCCCTCAATGGTGTTACGTCATCTTCCCTCCTCCTCCTTCCTTCTATCTCGACGACGAAGACGACTCTTCCTCCTCTGATTTCTCTCCTCTCCTCATCGCTCTCATCGGAATCCTCGCTAGCGCCTTCATCCTCGTCAGCTACTACACTCTCATCTCCAAATACTGCCACCGCCGTCGCCACAACTCCTCCTCTACCTCCGCCGCAGCTATAAACAGAATCTCATCAGATTACACCTGGCAAGGAACCAACAACAACAACAACAACGGAGCTACGAATCCGAATCAAACGATTGGTGGTGGTGGTGGCGATGGACTCGATGAATCTCTGATTAAATCGATAACTGTTTACAAATACAGAAAGATGGATGGATTTGTTGAATCTTCAGATTGCTCTGTTTGTTTAAGCGAGTTTCAAGAGAACGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCACGTTCCTTGTATTGATACTTGGTTGAAATCTCACTCTAATTGTCCTCTCTGCCGCGCCTTCATCGTCACTTCCTCCGCCGTTGAGATCGTCGATTTAACCAATCAACAGATCGTTACGGAGAACAACTCGATTTCGACCGGAGATGATTCCGTCGTTGTCGTTAACTTAGATCTGGAAAATTCTAGATCTCGGAATGAGACGGTTAATGAAGGATCGACGCCGAAACCACCGGAGATGCAGGATTCAAGAGACGGAGAAGAGCGGAGATCGGCGTCGTTAAACTCAGGCGGCGGTGTGGTATCGATCGCAGATATACTAAGGGAGATTGAAGACGACGAAGAATCAGCGGGTGTAGGAACTTCTCGGTGGGTAGAAGAAGGGGAAGGAGAGAAGACGCCTCCGCCGTCAGGATCGGCGGCGAATCAAACAAACGGAATTTCGAATTTTCTGGTTCGGAGTTCAATGGCGGCGATGAAGAGATCTGGTTACGATAGAGCAAAAAATTACCGTTTACCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

356

Amino Acids

38.86

Weight (kDa)

4.8

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	158 - 201	3e-14	Ring finger domain
zf-RING_11	PF17123	158 - 187	3.2e-11	RING-like zinc finger
zf-rbx1	PF12678	159 - 201	2.5e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	159 - 200	1.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	159 - 200	2.7e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	811
AccII	CGCG	2 cut(s)	542, 603
AclWI	GGATC	2 cut(s)	769, 967
AcsI	RAATTY	3 cut(s)	727, 984, 991
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	3 cut(s)	767, 821, 944
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	956
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	7 cut(s)	9, 464, 500, 574, 795, 878, 1011
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	4 cut(s)	225, 293, 356, 513
AluI	AGCT	4 cut(s)	225, 293, 356, 513
Alw26I	GTCTC	3 cut(s)	48, 740, 792
AlwI	GGATC	2 cut(s)	769, 967
AlwNI	CAGNNNCTG	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	3 cut(s)	727, 984, 991
AspLEI	GCGC	2 cut(s)	209, 605
AsuII	TTCGAA	1 cut(s)	989
AsuNHI	GCTAGC	1 cut(s)	203
BbsI	GAAGAC	3 cut(s)	150, 885, 947
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	3 cut(s)	389, 442, 446
BceAI	ACGGC	3 cut(s)	243, 611, 937
BciT130I	CCWGG	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	48, 740, 792
BfaI	CTAG	2 cut(s)	204, 732
BfoI	RGCGCY	1 cut(s)	210
BglII	AGATCT	3 cut(s)	718, 734, 1028
BisI	GCNGC	6 cut(s)	288, 291, 601, 838, 966, 1017
BlsI	GCNGC	6 cut(s)	289, 292, 602, 839, 967, 1018
Bme1390I	CCNGG	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	774
BmtI	GCTAGC	1 cut(s)	207
BpiI	GAAGAC	3 cut(s)	150, 885, 947
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
Bpu14I	TTCGAA	1 cut(s)	989
BpuEI	CTTGAG	2 cut(s)	48, 535
Bsa29I	ATCGAT	2 cut(s)	422, 851
BsaHI	GRCGYC	3 cut(s)	767, 821, 944
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	686, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	956
BseBI	CCWGG	1 cut(s)	322
BseCI	ATCGAT	2 cut(s)	422, 851
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	213, 457
BseLI	CCNNNNNNNGG	1 cut(s)	956
BseMII	CTCAG	1 cut(s)	846
BseRI	GAGGAG	7 cut(s)	105, 108, 148, 162, 167, 262, 265
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	2 cut(s)	542, 603
Bsh1285I	CGRYCG	2 cut(s)	687, 855
BshVI	ATCGAT	2 cut(s)	422, 851
BsiEI	CGRYCG	2 cut(s)	687, 855
BsiSI	CCGG	2 cut(s)	687, 779
BslI	CCNNNNNNNGG	1 cut(s)	956
BsmAI	GTCTC	3 cut(s)	48, 740, 792
BsmBI	CGTCTC	2 cut(s)	740, 792
Bsp119I	TTCGAA	1 cut(s)	989
Bsp143I	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
Bsp19I	CCATGG	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	845
BspDI	ATCGAT	2 cut(s)	422, 851
BspFNI	CGCG	2 cut(s)	542, 603
BspLI	GGNNCC	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	207
BspPI	GGATC	2 cut(s)	769, 967
BspQI	GCTCTTC	1 cut(s)	801
BspT104I	TTCGAA	1 cut(s)	989
BsrBI	CCGCTC	1 cut(s)	811
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
BssNI	GRCGYC	3 cut(s)	767, 821, 944
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	4 cut(s)	59, 430, 751, 1058
Bst6I	CTCTTC	3 cut(s)	157, 801, 1019
BstACI	GRCGYC	3 cut(s)	767, 821, 944
BstBI	TTCGAA	1 cut(s)	989
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	715, 832, 866
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	213, 457
BstFNI	CGCG	2 cut(s)	542, 603
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	209, 605
BstKTI	GATC	9 cut(s)	636, 660, 721, 737, 764, 818, 855, 962, 1031
BstMAI	GTCTC	3 cut(s)	48, 740, 792
BstMBI	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
BstMCI	CGRYCG	2 cut(s)	687, 855
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	320
BstUI	CGCG	2 cut(s)	542, 603
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	3 cut(s)	150, 885, 947
BstX2I	RGATCY	3 cut(s)	718, 734, 1028
BstYI	RGATCY	3 cut(s)	718, 734, 1028
Bsu15I	ATCGAT	2 cut(s)	422, 851
BsuTUI	ATCGAT	2 cut(s)	422, 851
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	3 cut(s)	166, 408, 1034
BtsCI	GGATG	2 cut(s)	213, 457
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	57
CfoI	GCGC	2 cut(s)	209, 605
ClaI	ATCGAT	2 cut(s)	422, 851
CseI	GACGC	3 cut(s)	775, 810, 952
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	4 cut(s)	225, 293, 356, 513
CviKI_1	RGCY	4 cut(s)	225, 293, 356, 513
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	3 cut(s)	715, 832, 866
DpnI	GATC	9 cut(s)	635, 659, 720, 736, 763, 817, 854, 961, 1030
DpnII	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
Eam1104I	CTCTTC	3 cut(s)	157, 801, 1019
EarI	CTCTTC	3 cut(s)	157, 801, 1019
EciI	GGCGGA	3 cut(s)	274, 613, 939
Eco130I	CCWWGG	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	2 cut(s)	740, 792
FaeI	CATG	1 cut(s)	30
FaiI	YATR	6 cut(s)	28, 40, 49, 73, 296, 863
FatI	CATG	1 cut(s)	26
FauI	CCCGC	1 cut(s)	889
Fnu4HI	GCNGC	6 cut(s)	288, 291, 601, 838, 966, 1017
FokI	GGATG	2 cut(s)	200, 464
Fsp4HI	GCNGC	6 cut(s)	288, 291, 601, 838, 966, 1017
FspBI	CTAG	2 cut(s)	204, 732
GlaI	GCGC	2 cut(s)	208, 604
GluI	GCNGC	6 cut(s)	288, 291, 601, 838, 966, 1017
HaeII	RGCGCY	1 cut(s)	210
HapII	CCGG	2 cut(s)	687, 779
HgaI	GACGC	3 cut(s)	775, 810, 952
HhaI	GCGC	2 cut(s)	209, 605
Hin1I	GRCGYC	3 cut(s)	767, 821, 944
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	2 cut(s)	207, 603
HinP1I	GCGC	2 cut(s)	207, 603
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	2 cut(s)	687, 779
Hpy166II	GTNNAC	3 cut(s)	433, 712, 1061
Hpy188I	TCNGA	8 cut(s)	163, 194, 313, 366, 414, 472, 741, 1005
Hpy188III	TCNNGA	6 cut(s)	134, 500, 722, 732, 795, 957
Hpy8I	GTNNAC	3 cut(s)	433, 712, 1061
Hpy99I	CGWCG	8 cut(s)	140, 143, 264, 641, 704, 769, 826, 887
HpyAV	CCTTC	7 cut(s)	132, 136, 220, 616, 752, 920, 926
HpyCH4III	ACNGT	4 cut(s)	59, 430, 751, 1058
HpyCH4IV	ACGT	2 cut(s)	102, 549
HpyCH4V	TGCA	3 cut(s)	75, 534, 787
HpyF3I	CTNAG	3 cut(s)	715, 832, 866
HpySE526I	ACGT	2 cut(s)	102, 549
Hsp92I	GRCGYC	3 cut(s)	767, 821, 944
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	2 cut(s)	207, 603
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	2 cut(s)	204, 732
MaeII	ACGT	2 cut(s)	102, 549
MaeIII	GTNAC	5 cut(s)	98, 522, 613, 661, 1034
MalI	GATC	9 cut(s)	635, 659, 720, 736, 763, 817, 854, 961, 1030
MbiI	CCGCTC	1 cut(s)	811
MboI	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
MflI	RGATCY	3 cut(s)	718, 734, 1028
MluCI	AATT	5 cut(s)	586, 727, 984, 991, 1051
MluI	ACGCGT	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	143, 393
MseI	TTAA	6 cut(s)	417, 488, 644, 711, 753, 827
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	2 cut(s)	687, 779
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	2 cut(s)	542, 603
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	989
PciSI	GCTCTTC	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 546, 950
PkrI	GCNGC	6 cut(s)	289, 292, 602, 839, 967, 1018
Ple19I	CGATCG	1 cut(s)	855
PleI	GAGTC	2 cut(s)	143, 393
PpsI	GAGTC	2 cut(s)	143, 393
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	57
PsuI	RGATCY	3 cut(s)	718, 734, 1028
PvuI	CGATCG	1 cut(s)	855
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	6 cut(s)	417, 488, 644, 711, 753, 827
SatI	GCNGC	6 cut(s)	288, 291, 601, 838, 966, 1017
Sau3AI	GATC	9 cut(s)	633, 657, 718, 734, 761, 815, 852, 959, 1028
SchI	GAGTC	2 cut(s)	143, 393
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	9 cut(s)	105, 227, 284, 295, 323, 358, 515, 529, 552
SfaNI	GCATC	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	989
SmlI	CTYRAG	2 cut(s)	63, 514
SmoI	CTYRAG	2 cut(s)	63, 514
Sse9I	AATT	5 cut(s)	586, 727, 984, 991, 1051
SspMI	CTAG	2 cut(s)	204, 732
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	59, 430, 751, 1058
TaiI	ACGT	2 cut(s)	105, 552
TaqI	TCGA	9 cut(s)	135, 402, 422, 639, 677, 683, 764, 851, 989
TasI	AATT	5 cut(s)	586, 727, 984, 991, 1051
TauI	GCSGC	5 cut(s)	290, 603, 840, 968, 1019
Tru1I	TTAA	6 cut(s)	417, 488, 644, 711, 753, 827
Tru9I	TTAA	6 cut(s)	417, 488, 644, 711, 753, 827
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	6 cut(s)	36, 202, 420, 598, 771, 1037
TspGWI	ACGGA	5 cut(s)	366, 680, 688, 816, 996
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	3 cut(s)	727, 984, 991
XbaI	TCTAGA	1 cut(s)	731
XspI	CTAG	2 cut(s)	204, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.