Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Reverse (-)

15452992 .. 15454183

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGCTCTTCAGGGAACCAAAATCCTTGGGCACCATATGACAATTACAAAGATTGTTCTCAAGGAATTTGCAGCATCTACTGTCCACAATGGTGCTACATCCTTGGCCCTCCTCCCCCTCCTTTTGATTTTGCAGAAGCTGATGACAGCAAAGACTCTGCTACAGATTTCTCTCCTCTCATTATAGCAGTCATTGGCATCTTTGCAAGTGCTTTCATTTTAGTCACTTACTACACCATCATATCGAAATATTGCCGGCGAAGAGATAACGATGGCGGCCGAGACATAGACATGGAGAATTCGAATCCAAACCAAATTAGTGAATCATGGCAAGGCTCAACAACTGGCCTTGATGAGTCTCTGATCAAGTCAATCAAAGTTCACAAGTATAAGAGAGGTGACAGCCTTGTAGAAGGCACAGACTGCTCTGTTTGCCTAAGTGAGTTCGAAGAAAATGAGAGCCTGAGATTATTGCCAAAGTGCAGCCATGCTTTCCATGTTCCTTGCATTGATACTTGGTTCAAATCTCACTCTAGTTGCCCGCTGTGCCGGTCGAATATTGCTGCTCCTGCCATAGCTTTGGTGCCTCATCATCATCAACAAGTGCTGTCTCCAGTTCAAGAGAATCCACAGCAGGAGCAAAATGTGACTGCTTCAGAATACCAGCACAGAAGCCATGCAAGTGTTTTGGTTGTCCAAGATTTGGAAGAGGTTGTAAGTCTTGCAAATGATCATGTTGTTCCAAAGACCACAACTCAAGATATTGTTAGAGAAAGGGCTCATTTGGAGAATACAGTGAACAGTTGTGAGATTGAACAAGATGGGATCCAGCAATTGAGGAGATCAGCTTCTTTGAATTGTGTTTCCATTGCTGATGTGTTGCATTTACATGACTGTGAAGATGATGAGGACTTGGAGAACCAGATGGAAAATGTCCAATTTTCCATGGGAATTGGATCCTCAAATAGAGTAGCAGAGGAACAGAATTCCAAATCCGACAACCATAGAAGTGGAGTTTTCAGCTTGGTGAAGGGTCCTCTTGTGTTGAAGAGATCAACTTCAACAGGGAGATTTGTGTTCACAAGGTATGGAAAGGAAAAGAATTCTATAACTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

374

Amino Acids

41.59

Weight (kDa)

5.16

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	31, 583
AccB7I	CCANNNNNTGG	1 cut(s)	703
AciI	CCGC	2 cut(s)	276, 542
AclWI	GGATC	4 cut(s)	820, 833, 951, 964
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	4 cut(s)	66, 298, 985, 1102
AcuI	CTGAAG	1 cut(s)	639
AfiI	CCNNNNNNNGG	1 cut(s)	703
AgsI	TTSAA	6 cut(s)	523, 620, 815, 856, 1048, 1062
AleI	CACNNNNGTG	1 cut(s)	91
AluBI	AGCT	4 cut(s)	140, 578, 848, 1023
AluI	AGCT	4 cut(s)	140, 578, 848, 1023
Alw26I	GTCTC	3 cut(s)	276, 363, 615
AlwI	GGATC	4 cut(s)	820, 833, 951, 964
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	3 cut(s)	106, 277, 346
ApeKI	GCWGC	3 cut(s)	72, 483, 563
ApoI	RAATTY	4 cut(s)	66, 298, 985, 1102
AspS9I	GGNCC	2 cut(s)	107, 1034
AsuHPI	GGTGA	2 cut(s)	410, 1039
AsuII	TTCGAA	2 cut(s)	302, 447
AvaII	GGWCC	1 cut(s)	1034
BaeGI	GKGCMC	1 cut(s)	34
BamHI	GGATCC	2 cut(s)	825, 956
BanI	GGYRCC	2 cut(s)	31, 583
BanII	GRGCYC	2 cut(s)	8, 781
BbvI	GCAGC	3 cut(s)	84, 495, 550
BccI	CCATC	4 cut(s)	245, 266, 815, 919
BclI	TGATCA	2 cut(s)	363, 730
BcoDI	GTCTC	3 cut(s)	276, 363, 615
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	4 cut(s)	73, 277, 484, 564
BlsI	GCNGC	4 cut(s)	74, 278, 485, 565
Bme18I	GGWCC	1 cut(s)	1034
BmgT120I	GGNCC	2 cut(s)	107, 1034
BmiI	GGNNCC	6 cut(s)	17, 33, 585, 827, 958, 1035
BmsI	GCATC	2 cut(s)	84, 207
BpmI	CTGGAG	1 cut(s)	597
Bpu14I	TTCGAA	2 cut(s)	302, 447
BpuEI	CTTGAG	2 cut(s)	45, 741
BsaJI	CCNNGG	3 cut(s)	26, 103, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse118I	RCCGGY	2 cut(s)	255, 549
Bse1I	ACTGG	2 cut(s)	349, 614
Bse3DI	GCAATG	1 cut(s)	867
BseDI	CCNNGG	3 cut(s)	26, 103, 945
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	349, 614
BseRI	GAGGAG	3 cut(s)	102, 165, 853
BseSI	GKGCMC	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	84, 495, 550
BsgI	GTGCAG	1 cut(s)	502
Bsh1285I	CGRYCG	2 cut(s)	280, 554
BshFI	GGCC	3 cut(s)	108, 279, 348
BshNI	GGYRCC	2 cut(s)	31, 583
BsiEI	CGRYCG	2 cut(s)	280, 554
BsiSI	CCGG	2 cut(s)	256, 550
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	3 cut(s)	276, 363, 615
BsnI	GGCC	3 cut(s)	108, 279, 348
Bsp119I	TTCGAA	2 cut(s)	302, 447
Bsp1286I	GDGCHC	3 cut(s)	8, 34, 781
Bsp143I	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
Bsp19I	CCATGG	1 cut(s)	945
BspACI	CCGC	2 cut(s)	276, 542
BspANI	GGCC	3 cut(s)	108, 279, 348
BspCNI	CTCAG	1 cut(s)	456
BspLI	GGNNCC	6 cut(s)	17, 33, 585, 827, 958, 1035
BspPI	GGATC	4 cut(s)	820, 833, 951, 964
BspQI	GCTCTTC	1 cut(s)	13
BspT104I	TTCGAA	2 cut(s)	302, 447
BspT107I	GGYRCC	2 cut(s)	31, 583
BsrDI	GCAATG	1 cut(s)	867
BsrFI	RCCGGY	2 cut(s)	255, 549
BsrI	ACTGG	2 cut(s)	349, 614
BssAI	RCCGGY	2 cut(s)	255, 549
BssECI	CCNNGG	3 cut(s)	26, 103, 945
BssMI	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
BssT1I	CCWWGG	3 cut(s)	26, 103, 945
Bst4CI	ACNGT	4 cut(s)	83, 796, 803, 896
Bst6I	CTCTTC	4 cut(s)	13, 256, 702, 1043
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstBI	TTCGAA	2 cut(s)	302, 447
BstC8I	GCNNGC	2 cut(s)	257, 542
BstDEI	CTNAG	2 cut(s)	437, 464
BstDSI	CCRYGG	1 cut(s)	945
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	6 cut(s)	366, 733, 828, 845, 959, 1055
BstMAI	GTCTC	3 cut(s)	276, 363, 615
BstMBI	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
BstMCI	CGRYCG	2 cut(s)	280, 554
BstMWI	GCNNNNNNNGC	4 cut(s)	423, 432, 546, 569
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	3 cut(s)	84, 495, 550
BstX2I	RGATCY	2 cut(s)	825, 956
BstXI	CCANNNNNNTGG	2 cut(s)	580, 1010
BstYI	RGATCY	2 cut(s)	825, 956
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	108, 279, 348
BtgI	CCRYGG	1 cut(s)	945
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	801
Cac8I	GCNNGC	2 cut(s)	257, 542
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr10I	RCCGGY	2 cut(s)	255, 549
Cfr13I	GGNCC	2 cut(s)	107, 1034
CviAII	CATG	8 cut(s)	292, 327, 488, 497, 677, 734, 890, 946
DdeI	CTNAG	2 cut(s)	437, 464
DpnI	GATC	6 cut(s)	365, 732, 827, 844, 958, 1054
DpnII	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
EaeI	YGGCCR	1 cut(s)	277
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	4 cut(s)	13, 256, 702, 1043
EarI	CTCTTC	4 cut(s)	13, 256, 702, 1043
EclXI	CGGCCG	1 cut(s)	277
Eco130I	CCWWGG	3 cut(s)	26, 103, 945
Eco24I	GRGCYC	2 cut(s)	8, 781
Eco47I	GGWCC	1 cut(s)	1034
Eco52I	CGGCCG	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRI	GAATTC	3 cut(s)	298, 985, 1102
EcoT14I	CCWWGG	3 cut(s)	26, 103, 945
EcoT38I	GRGCYC	2 cut(s)	8, 781
ErhI	CCWWGG	3 cut(s)	26, 103, 945
FaeI	CATG	8 cut(s)	295, 330, 491, 500, 680, 737, 893, 949
FatI	CATG	8 cut(s)	291, 326, 487, 496, 676, 733, 889, 945
FauI	CCCGC	1 cut(s)	549
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	2 cut(s)	363, 730
Fnu4HI	GCNGC	4 cut(s)	73, 277, 484, 564
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	2 cut(s)	8, 781
Fsp4HI	GCNGC	4 cut(s)	73, 277, 484, 564
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	4 cut(s)	73, 277, 484, 564
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	108, 279, 348
HapII	CCGG	2 cut(s)	256, 550
Hin1II	CATG	8 cut(s)	295, 330, 491, 500, 680, 737, 893, 949
HinfI	GANTC	5 cut(s)	155, 304, 323, 356, 625
HpaII	CCGG	2 cut(s)	256, 550
HphI	GGTGA	2 cut(s)	410, 1039
Hpy166II	GTNNAC	4 cut(s)	86, 382, 799, 1080
Hpy188I	TCNGA	3 cut(s)	363, 658, 997
Hpy188III	TCNNGA	2 cut(s)	620, 758
Hpy8I	GTNNAC	4 cut(s)	86, 382, 799, 1080
HpyAV	CCTTC	2 cut(s)	407, 1024
HpyCH4III	ACNGT	4 cut(s)	83, 796, 803, 896
HpyCH4V	TGCA	8 cut(s)	72, 134, 206, 483, 507, 680, 725, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	423, 432, 546, 569
HpyF3I	CTNAG	2 cut(s)	437, 464
Hsp92II	CATG	8 cut(s)	295, 330, 491, 500, 680, 737, 893, 949
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
Ksp22I	TGATCA	2 cut(s)	363, 730
Kzo9I	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	571, 637
Lsp1109I	GCAGC	3 cut(s)	84, 495, 550
LweI	GCATC	2 cut(s)	84, 207
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	3 cut(s)	223, 398, 646
MalI	GATC	6 cut(s)	365, 732, 827, 844, 958, 1054
MboI	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
MboII	GAAGA	5 cut(s)	273, 461, 719, 911, 1060
MfeI	CAATTG	1 cut(s)	833
MflI	RGATCY	2 cut(s)	825, 956
MhlI	GDGCHC	3 cut(s)	8, 34, 781
MlyI	GAGTC	2 cut(s)	149, 365
MmeI	TCCRAC	1 cut(s)	1020
MroNI	GCCGGC	1 cut(s)	255
MseI	TTAA	1 cut(s)	1120
MslI	CAYNNNNRTG	6 cut(s)	91, 290, 681, 888, 894, 1008
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	2 cut(s)	256, 550
MunI	CAATTG	1 cut(s)	833
MwoI	GCNNNNNNNGC	4 cut(s)	423, 432, 546, 569
NaeI	GCCGGC	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	945
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
NgoMIV	GCCGGC	1 cut(s)	255
NlaIII	CATG	8 cut(s)	295, 330, 491, 500, 680, 737, 893, 949
NlaIV	GGNNCC	6 cut(s)	17, 33, 585, 827, 958, 1035
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	223, 398, 646
NspV	TTCGAA	2 cut(s)	302, 447
OliI	CACNNNNGTG	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	304, 323, 625
PflMI	CCANNNNNTGG	1 cut(s)	703
PkrI	GCNGC	4 cut(s)	74, 278, 485, 565
PleI	GAGTC	2 cut(s)	149, 364
PpsI	GAGTC	2 cut(s)	149, 364
PpuMI	RGGWCCY	1 cut(s)	1034
Psp5II	RGGWCCY	1 cut(s)	1034
PspN4I	GGNNCC	6 cut(s)	17, 33, 585, 827, 958, 1035
PspPI	GGNCC	2 cut(s)	107, 1034
PspPPI	RGGWCCY	1 cut(s)	1034
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	825, 956
RseI	CAYNNNNRTG	6 cut(s)	91, 290, 681, 888, 894, 1008
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	1120
SatI	GCNGC	4 cut(s)	73, 277, 484, 564
Sau3AI	GATC	6 cut(s)	363, 730, 825, 842, 956, 1052
Sau96I	GGNCC	2 cut(s)	107, 1034
SchI	GAGTC	2 cut(s)	149, 365
SduI	GDGCHC	3 cut(s)	8, 34, 781
SetI	ASST	7 cut(s)	142, 400, 580, 714, 850, 1025, 1088
SfaNI	GCATC	2 cut(s)	84, 207
SfcI	CTRYAG	1 cut(s)	162
SfuI	TTCGAA	2 cut(s)	302, 447
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	6 cut(s)	91, 290, 681, 888, 894, 1008
SmlI	CTYRAG	2 cut(s)	60, 756
SmoI	CTYRAG	2 cut(s)	60, 756
SsiI	CCGC	2 cut(s)	276, 542
SspI	AATATT	2 cut(s)	251, 559
SspMI	CTAG	1 cut(s)	534
StyI	CCWWGG	3 cut(s)	26, 103, 945
TaaI	ACNGT	4 cut(s)	83, 796, 803, 896
TaqI	TCGA	4 cut(s)	245, 302, 447, 554
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	304, 323, 625
Tru1I	TTAA	1 cut(s)	1120
Tru9I	TTAA	1 cut(s)	1120
TscAI	CASTG	1 cut(s)	801
TseFI	GTSAC	3 cut(s)	223, 398, 646
TseI	GCWGC	3 cut(s)	72, 483, 563
Tsp45I	GTSAC	3 cut(s)	223, 398, 646
TspDTI	ATGAA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	801
Van91I	CCANNNNNTGG	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	1034
XapI	RAATTY	4 cut(s)	66, 298, 985, 1102
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.