Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Reverse (-)

5799432 .. 5801418

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTCGACAAACCCTAACCCATGGTCACCATACGATTCATACAATGATTGTTCTCAAGGAATCTGCAACATCTACTGTCCTCAATGGTGTTACCTAATCTTCCCTCCTCCTCCTCCTTCTTTCTTCCTCGACGACGACTCTTCCTCCTCCTCCTCCAGTTTCTCTCCTCTCCTCATCGCTCTCATCGGTATCTTAACCAGCGCTCTCATCCTCGTCAGCTACTACACTCTCATCTCAAAATACTGTCATCGCCACCACCAAACCTCCTCTTCAGAAACTCTTAACCTAAATCATAACGGTGAGGGTTTCTTTTCCTCCACGCAAAGAATCTCCACGAATGGAGATGGACTCAATGAGTCCATGATTAAATCAATCACTGTTTATAAGTATAAAAGTGGAGATGGATTCGTTGATGGTTCAGATTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAAACGAGAGTTTGAGATTGTTGCCGAAATGTAACCACGCGTTTCATCTTCCTTGTATTGATACTTGGTTAAAATCTCACTCTAATTGTCCACTTTGCCGCGCTTTCGTCACCGGAGTTAATAATCCCACCGCCTCCGTCGGCCAGAATGTTTCAGTCGTTGTAGCTAACCAATCGAATTCTGCTCATCAAACCGGTTCGGTATCTGAAATCAATTTGAATTTGGCCGGTTATGAAAGCCAAACCGGTGATTTTGATTCCGTTGTTGTAATCGAAGATCTGGAAATTGGATCTCGGAATAGTGACGCTAGATCGGAATTGCAACTACCGGAGGAGAGACGGGAGACTAAGGATGAAGATTCGCTGCCGATTCGGAGATCTGTATCGTTGAACTCTGGTGTAGTGGTTTCGATTGCTGATGTACTGCGAGAGATTGAAGACGAAGAAGGAGAATCCGGCGGAGTTGGAACTTCGCAGCGGCGAGAGGAAGGGGAAGATGGCGATGGGAAGACGATTCCACCGACGGAGGCGAATCAGAGAAGCGGCGGAGTTTCGGGTTTTTTTGTACGGAGTTTATCGACGGGAAGATTTATTTTCTCGAGGTATGATCGAGGGCGAAATTACCGTCTGCCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

362

Amino Acids

39.75

Weight (kDa)

4.82

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	141 - 184	2.5e-14	Ring finger domain
zf-RING_11	PF17123	141 - 170	5e-11	RING-like zinc finger
zf-rbx1	PF12678	142 - 184	2.8e-09	RING-H2 zinc finger domain
zf-C3HC4	PF00097	142 - 183	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	142 - 183	1.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	491, 552
AciI	CCGC	6 cut(s)	550, 582, 909, 928, 993, 996
AclWI	GGATC	1 cut(s)	748
AcoI	YGGCCR	2 cut(s)	592, 675
AcsI	RAATTY	2 cut(s)	628, 670
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	873, 1017
AfeI	AGCGCT	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	489
AgeI	ACCGGT	2 cut(s)	644, 695
AgsI	TTSAA	4 cut(s)	449, 670, 841, 887
AluBI	AGCT	2 cut(s)	219, 617
AluI	AGCT	2 cut(s)	219, 617
Alw26I	GTCTC	2 cut(s)	781, 788
AlwI	GGATC	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	1048
Aor51HI	AGCGCT	1 cut(s)	202
AoxI	GGCC	2 cut(s)	592, 675
ApeKI	GCWGC	2 cut(s)	814, 925
ApoI	RAATTY	2 cut(s)	628, 670
ArsI	GACNNNNNNTTYG	1 cut(s)	1060
AsiGI	ACCGGT	2 cut(s)	644, 695
AspLEI	GCGC	2 cut(s)	203, 554
AsuHPI	GGTGA	4 cut(s)	18, 311, 553, 710
AvaI	CYCGRG	1 cut(s)	1048
BbsI	GAAGAC	2 cut(s)	894, 965
BbvI	GCAGC	2 cut(s)	801, 937
BccI	CCATC	5 cut(s)	338, 395, 407, 941, 947
BcoDI	GTCTC	2 cut(s)	781, 788
BfaI	CTAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	204
BglII	AGATCT	2 cut(s)	727, 827
BisI	GCNGC	5 cut(s)	550, 815, 926, 929, 994
BlsI	GCNGC	5 cut(s)	551, 816, 927, 930, 995
BmeT110I	CYCGRG	1 cut(s)	1048
BpiI	GAAGAC	2 cut(s)	894, 965
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	832
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	4 cut(s)	563, 644, 695, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 248, 278
Bse118I	RCCGGY	3 cut(s)	644, 677, 695
Bse1I	ACTGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	832
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	207, 808
BseJI	GATNNNNATC	1 cut(s)	832
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	801, 937
Bsh1236I	CGCG	2 cut(s)	491, 552
BshFI	GGCC	2 cut(s)	594, 677
BshTI	ACCGGT	2 cut(s)	644, 695
BsiHKCI	CYCGRG	1 cut(s)	1048
BsiSI	CCGG	6 cut(s)	564, 645, 678, 696, 779, 906
BsmAI	GTCTC	2 cut(s)	781, 788
BsmBI	CGTCTC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	594, 677
BsoBI	CYCGRG	1 cut(s)	1048
Bsp143I	GATC	5 cut(s)	727, 740, 761, 827, 1057
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	6 cut(s)	550, 582, 909, 928, 993, 996
BspANI	GGCC	2 cut(s)	594, 677
BspFNI	CGCG	2 cut(s)	491, 552
BspPI	GGATC	1 cut(s)	748
BsrFI	RCCGGY	3 cut(s)	644, 677, 695
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	3 cut(s)	644, 677, 695
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	5 cut(s)	727, 740, 761, 827, 1057
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	5 cut(s)	77, 245, 299, 379, 1076
Bst6I	CTCTTC	2 cut(s)	145, 274
BstDEI	CTNAG	1 cut(s)	798
BstDSI	CCRYGG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	207, 808
BstFNI	CGCG	2 cut(s)	491, 552
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	203, 554
BstKTI	GATC	5 cut(s)	730, 743, 764, 830, 1060
BstMAI	GTCTC	2 cut(s)	781, 788
BstMBI	GATC	5 cut(s)	727, 740, 761, 827, 1057
BstPI	GGTNACC	1 cut(s)	24
BstUI	CGCG	2 cut(s)	491, 552
BstV1I	GCAGC	2 cut(s)	801, 937
BstV2I	GAAGAC	2 cut(s)	894, 965
BstX2I	RGATCY	3 cut(s)	727, 740, 827
BstYI	RGATCY	3 cut(s)	727, 740, 827
BsuRI	GGCC	2 cut(s)	594, 677
BtgI	CCRYGG	1 cut(s)	20
BtgZI	GCGATG	3 cut(s)	160, 233, 966
BtsCI	GGATG	2 cut(s)	207, 808
BtsIMutI	CAGTG	1 cut(s)	375
CfoI	GCGC	2 cut(s)	203, 554
Cfr10I	RCCGGY	3 cut(s)	644, 677, 695
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	872, 1016
CspAI	ACCGGT	2 cut(s)	644, 695
CviAII	CATG	2 cut(s)	21, 361
CviJI	RGCY	5 cut(s)	219, 594, 617, 677, 690
CviKI_1	RGCY	5 cut(s)	219, 594, 617, 677, 690
CviQI	GTAC	2 cut(s)	872, 1016
DdeI	CTNAG	1 cut(s)	798
DpnI	GATC	5 cut(s)	729, 742, 763, 829, 1059
DpnII	GATC	5 cut(s)	727, 740, 761, 827, 1057
EaeI	YGGCCR	2 cut(s)	592, 675
Eam1104I	CTCTTC	2 cut(s)	145, 274
EarI	CTCTTC	2 cut(s)	145, 274
EciI	GGCGGA	2 cut(s)	924, 1011
Eco130I	CCWWGG	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	1048
Eco91I	GGTNACC	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	781
FaeI	CATG	2 cut(s)	24, 364
FaiI	YATR	9 cut(s)	22, 31, 40, 294, 362, 384, 390, 684, 1056
FatI	CATG	2 cut(s)	20, 360
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	550, 815, 926, 929, 994
FokI	GGATG	2 cut(s)	194, 815
Fsp4HI	GCNGC	5 cut(s)	550, 815, 926, 929, 994
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	2 cut(s)	202, 553
GluI	GCNGC	5 cut(s)	550, 815, 926, 929, 994
GsuI	CTGGAG	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	594, 677
HapII	CCGG	6 cut(s)	564, 645, 678, 696, 779, 906
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	2 cut(s)	203, 554
Hin1II	CATG	2 cut(s)	24, 364
Hin6I	GCGC	2 cut(s)	201, 552
HinP1I	GCGC	2 cut(s)	201, 552
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	6 cut(s)	564, 645, 678, 696, 779, 906
HphI	GGTGA	4 cut(s)	18, 311, 553, 710
Hpy166II	GTNNAC	2 cut(s)	6, 542
Hpy188I	TCNGA	7 cut(s)	274, 421, 658, 747, 766, 825, 987
Hpy188III	TCNNGA	2 cut(s)	731, 1048
Hpy8I	GTNNAC	2 cut(s)	6, 542
Hpy99I	CGWCG	5 cut(s)	134, 137, 593, 976, 1033
HpyAV	CCTTC	3 cut(s)	126, 890, 932
HpyCH4III	ACNGT	5 cut(s)	77, 245, 299, 379, 1076
HpyCH4V	TGCA	2 cut(s)	66, 772
HpyF3I	CTNAG	1 cut(s)	798
Hsp92II	CATG	2 cut(s)	24, 364
HspAI	GCGC	2 cut(s)	201, 552
Kzo9I	GATC	5 cut(s)	727, 740, 761, 827, 1057
Lsp1109I	GCAGC	2 cut(s)	801, 937
MaeI	CTAG	1 cut(s)	759
MaeIII	GTNAC	5 cut(s)	24, 89, 482, 559, 752
MalI	GATC	5 cut(s)	729, 742, 763, 829, 1059
MboI	GATC	5 cut(s)	727, 740, 761, 827, 1057
MflI	RGATCY	3 cut(s)	727, 740, 827
MluCI	AATT	7 cut(s)	535, 628, 664, 670, 735, 767, 1069
MluI	ACGCGT	1 cut(s)	489
MlyI	GAGTC	3 cut(s)	131, 342, 365
MmeI	TCCRAC	1 cut(s)	895
MseI	TTAA	5 cut(s)	194, 282, 366, 521, 570
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	928
MspI	CCGG	6 cut(s)	564, 645, 678, 696, 779, 906
MvnI	CGCG	2 cut(s)	491, 552
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	5 cut(s)	727, 740, 761, 827, 1057
NlaIII	CATG	2 cut(s)	24, 364
NmuCI	GTSAC	3 cut(s)	24, 559, 752
PaeR7I	CTCGAG	1 cut(s)	1048
PcsI	WCGNNNNNNNCGW	1 cut(s)	968
PinAI	ACCGGT	2 cut(s)	644, 695
PkrI	GCNGC	5 cut(s)	551, 816, 927, 930, 995
PleI	GAGTC	3 cut(s)	131, 342, 364
PpsI	GAGTC	3 cut(s)	131, 342, 364
PsiI	TTATAA	1 cut(s)	384
PspEI	GGTNACC	1 cut(s)	24
PsuI	RGATCY	3 cut(s)	727, 740, 827
RsaI	GTAC	2 cut(s)	873, 1017
RsaNI	GTAC	2 cut(s)	872, 1016
RseI	CAYNNNNRTG	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	194, 282, 366, 521, 570
SatI	GCNGC	5 cut(s)	550, 815, 926, 929, 994
Sau3AI	GATC	5 cut(s)	727, 740, 761, 827, 1057
SchI	GAGTC	3 cut(s)	131, 342, 365
SetI	ASST	6 cut(s)	96, 221, 266, 288, 619, 1055
Sfr274I	CTCGAG	1 cut(s)	1048
SlaI	CTCGAG	1 cut(s)	1048
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	54, 1048
SmoI	CTYRAG	2 cut(s)	54, 1048
Sse9I	AATT	7 cut(s)	535, 628, 664, 670, 735, 767, 1069
SsiI	CCGC	6 cut(s)	550, 582, 909, 928, 993, 996
SspMI	CTAG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	5 cut(s)	77, 245, 299, 379, 1076
TaqI	TCGA	8 cut(s)	5, 129, 626, 723, 860, 1028, 1049, 1060
TasI	AATT	7 cut(s)	535, 628, 664, 670, 735, 767, 1069
TatI	WGTACW	1 cut(s)	871
TauI	GCSGC	3 cut(s)	552, 931, 996
Tru1I	TTAA	5 cut(s)	194, 282, 366, 521, 570
Tru9I	TTAA	5 cut(s)	194, 282, 366, 521, 570
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	3 cut(s)	24, 559, 752
TseI	GCWGC	2 cut(s)	814, 925
Tsp45I	GTSAC	3 cut(s)	24, 559, 752
TspDTI	ATGAA	4 cut(s)	27, 485, 699, 819
TspGWI	ACGGA	4 cut(s)	577, 700, 989, 1033
TspRI	CASTG	1 cut(s)	382
XapI	RAATTY	2 cut(s)	628, 670
XhoI	CTCGAG	1 cut(s)	1048
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.