Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002160.1

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Forward (+)

28314 .. 29360

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002160.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgggctctgcaagcaataataaccaatatccatggccaccatatgagactttcaaagactgttctcaaggattttgcagcatctactgcccacaatggtgttacatgatcttcgctcctccgccacctttcgagttcggcgacagctccgaggagagcgccggtataaacttctctcctcttattatagccctaataggcattgttgcaagtgcttgtattcttgtcacgtactacagcatcatatccaagtattgccggcgacgacccggtgcttctgctagggatattgacagggaggcgaatccggctagtgaatcgtggcagggctctaacactggtatggaagagtcactgatcaagtccatcaaggttcataagtatacgaagaatgatggggtggtagaaggcacagactgttctgtttgtttgagtgagttccaagaaaatgaaaacttaaggctattgccaaagtgcaaccatgcttttcatgttccttgtattgatgcttggctcaagtctcactctagttgtccgctttgtcggtccaatattgctgctcctgctatttctttggtgcctcaacaccataatcatcagcaagtattgccttctgtcgaagaaaatccacagcaggagctgatcaatcaataccagcatacaagtggtggaagtgtcttggtggttcaagatagggaagaagaggattttcgtgttcaaaataatgagatccatagattaaggagatcagtttctttgattgaggtgttgaatttacataatggtgaagatgatgaagacttggaaaaccagatggagcatttccagttttctatggatcaaagtgagcaattttcgatgcagaatttcgagttttctatggaaacagggtcctcaaaagaagctgtgtttggggaacagaattctaaattcaataatattagaagtggagttttcagcttggtaaagggtcctcttgggctgaagagatctatttcaacagggagattcaaggtatgcaaaggaaaagaactctgttattcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

348

Amino Acids

39.2

Weight (kDa)

5.34

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	2 cut(s)	122, 536
AclWI	GGATC	2 cut(s)	724, 846
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	4 cut(s)	772, 865, 922, 929
AcuI	CTGAAG	1 cut(s)	1004
AfaI	GTAC	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	457
AgsI	TTSAA	7 cut(s)	55, 689, 719, 772, 934, 999, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	4 cut(s)	147, 640, 905, 960
AluI	AGCT	4 cut(s)	147, 640, 905, 960
Alw26I	GTCTC	2 cut(s)	41, 525
AlwI	GGATC	2 cut(s)	724, 846
AlwNI	CAGNNNCTG	1 cut(s)	640
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	78, 557
ApoI	RAATTY	4 cut(s)	772, 865, 922, 929
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	546, 891, 971
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	797
AvaII	GGWCC	3 cut(s)	546, 891, 971
BalI	TGGCCA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	577
BanII	GRGCYC	2 cut(s)	8, 332
BbsI	GAAGAC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	90, 544
BccI	CCATC	3 cut(s)	374, 389, 808
BclI	TGATCA	2 cut(s)	357, 642
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	41, 525
BfaI	CTAG	3 cut(s)	282, 312, 528
BfmI	CTRYAG	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	457
BglII	AGATCT	1 cut(s)	989
BisI	GCNGC	2 cut(s)	79, 558
BlsI	GCNGC	2 cut(s)	80, 559
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	3 cut(s)	546, 891, 971
BmgT120I	GGNCC	3 cut(s)	546, 891, 971
BmiI	GGNNCC	3 cut(s)	579, 892, 972
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	90, 249, 496, 849
BpiI	GAAGAC	1 cut(s)	804
BpuEI	CTTGAG	2 cut(s)	51, 500
BpuMI	CCSGG	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	32, 150
Bse118I	RCCGGY	2 cut(s)	161, 258
Bse1I	ACTGG	2 cut(s)	343, 826
BseDI	CCNNGG	2 cut(s)	32, 150
BseNI	ACTGG	2 cut(s)	343, 826
BseRI	GAGGAG	3 cut(s)	108, 167, 168
BseXI	GCAGC	2 cut(s)	90, 544
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	577
BsiSI	CCGG	4 cut(s)	162, 259, 270, 308
BsmAI	GTCTC	2 cut(s)	41, 525
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	8, 332
Bsp143I	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	2 cut(s)	122, 536
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	579, 892, 972
BspPI	GGATC	2 cut(s)	724, 846
BspT107I	GGYRCC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	457
BsrFI	RCCGGY	2 cut(s)	161, 258
BsrI	ACTGG	2 cut(s)	343, 826
BssAI	RCCGGY	2 cut(s)	161, 258
BssECI	CCNNGG	2 cut(s)	32, 150
BssMI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
BssNAI	GTATAC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	32
Bst1107I	GTATAC	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	62, 419
Bst6I	CTCTTC	3 cut(s)	342, 696, 980
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	2 cut(s)	87, 607
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	13, 260
BstDSI	CCRYGG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	7 cut(s)	111, 360, 645, 732, 749, 841, 992
BstMAI	GTCTC	2 cut(s)	41, 525
BstMBI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 87, 308, 563, 607
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	90, 544
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	729, 989
BstYI	RGATCY	2 cut(s)	729, 989
BstZ17I	GTATAC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	336, 353
Cac8I	GCNNGC	2 cut(s)	13, 260
CaiI	CAGNNNCTG	1 cut(s)	640
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	2 cut(s)	161, 258
Cfr13I	GGNCC	3 cut(s)	546, 891, 971
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	4 cut(s)	33, 106, 482, 491
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	7 cut(s)	110, 359, 644, 731, 748, 840, 991
DpnII	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	342, 696, 980
EarI	CTCTTC	3 cut(s)	342, 696, 980
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	8, 332
Eco47I	GGWCC	3 cut(s)	546, 891, 971
Eco57I	CTGAAG	1 cut(s)	1004
EcoO109I	RGGNCCY	2 cut(s)	891, 971
EcoRI	GAATTC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	2 cut(s)	8, 332
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	4 cut(s)	36, 109, 485, 494
FatI	CATG	4 cut(s)	32, 105, 481, 490
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	2 cut(s)	357, 642
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	2 cut(s)	79, 558
FriOI	GRGCYC	2 cut(s)	8, 332
Fsp4HI	GCNGC	2 cut(s)	79, 558
FspBI	CTAG	3 cut(s)	282, 312, 528
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	2 cut(s)	79, 558
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	4 cut(s)	162, 259, 270, 308
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	36, 109, 485, 494
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	4 cut(s)	304, 317, 350, 1008
HpaII	CCGG	4 cut(s)	162, 259, 270, 308
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	401, 621
HpyCH4III	ACNGT	2 cut(s)	62, 419
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	6 cut(s)	11, 78, 209, 477, 862, 1020
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 87, 308, 563, 607
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	36, 109, 485, 494
HspAI	GCGC	1 cut(s)	159
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Ksp22I	TGATCA	2 cut(s)	357, 642
Kzo9I	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
LmnI	GCTCC	5 cut(s)	121, 152, 565, 637, 817
Lsp1109I	GCAGC	2 cut(s)	90, 544
LweI	GCATC	4 cut(s)	90, 249, 496, 849
MaeI	CTAG	3 cut(s)	282, 312, 528
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	101, 226, 351
MalI	GATC	7 cut(s)	110, 359, 644, 731, 748, 840, 991
MboI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
MboII	GAAGA	9 cut(s)	103, 359, 400, 632, 710, 713, 800, 809, 997
MflI	RGATCY	2 cut(s)	729, 989
MhlI	GDGCHC	2 cut(s)	8, 332
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	5 cut(s)	772, 851, 865, 922, 929
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	9 cut(s)	129, 145, 189, 292, 591, 697, 757, 904, 984
Mox20I	TGGCCA	1 cut(s)	37
MroNI	GCCGGC	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	2 cut(s)	458, 740
MslI	CAYNNNNRTG	4 cut(s)	97, 341, 663, 783
Msp20I	TGGCCA	1 cut(s)	37
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	4 cut(s)	162, 259, 270, 308
MspR9I	CCNGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	5 cut(s)	12, 87, 308, 563, 607
NaeI	GCCGGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
NgoMIV	GCCGGC	1 cut(s)	258
NlaIII	CATG	4 cut(s)	36, 109, 485, 494
NlaIV	GGNNCC	3 cut(s)	579, 892, 972
NmuCI	GTSAC	2 cut(s)	226, 351
OliI	CACNNNNGTG	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	304, 317, 1008
PkrI	GCNGC	2 cut(s)	80, 559
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	231
PpuMI	RGGWCCY	2 cut(s)	891, 971
Psp5II	RGGWCCY	2 cut(s)	891, 971
PspN4I	GGNNCC	3 cut(s)	579, 892, 972
PspPI	GGNCC	3 cut(s)	546, 891, 971
PspPPI	RGGWCCY	2 cut(s)	891, 971
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	729, 989
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	4 cut(s)	97, 341, 663, 783
SaqAI	TTAA	2 cut(s)	458, 740
SatI	GCNGC	2 cut(s)	79, 558
Sau3AI	GATC	7 cut(s)	108, 357, 642, 729, 746, 838, 989
Sau96I	GGNCC	3 cut(s)	546, 891, 971
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	8, 332
SetI	ASST	9 cut(s)	130, 149, 233, 375, 642, 768, 907, 962, 1017
SfaNI	GCATC	4 cut(s)	90, 249, 496, 849
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	3 cut(s)	546, 891, 971
SmiMI	CAYNNNNRTG	4 cut(s)	97, 341, 663, 783
SmlI	CTYRAG	3 cut(s)	66, 457, 515
SmoI	CTYRAG	3 cut(s)	66, 457, 515
Sse9I	AATT	5 cut(s)	772, 851, 865, 922, 929
SsiI	CCGC	2 cut(s)	122, 536
SspI	AATATT	2 cut(s)	553, 940
SspMI	CTAG	3 cut(s)	282, 312, 528
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	62, 419
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	4 cut(s)	132, 618, 857, 870
TaqII	GACCGA	1 cut(s)	534
TasI	AATT	5 cut(s)	772, 851, 865, 922, 929
TfiI	GAWTC	3 cut(s)	304, 317, 1008
Tru1I	TTAA	2 cut(s)	458, 740
Tru9I	TTAA	2 cut(s)	458, 740
TscAI	CASTG	2 cut(s)	343, 360
TseFI	GTSAC	2 cut(s)	226, 351
TseI	GCWGC	2 cut(s)	78, 557
Tsp45I	GTSAC	2 cut(s)	226, 351
TspDTI	ATGAA	4 cut(s)	365, 465, 479, 810
TspRI	CASTG	2 cut(s)	343, 360
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	3 cut(s)	546, 891, 971
XapI	RAATTY	4 cut(s)	772, 865, 922, 929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	3 cut(s)	282, 312, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.