FvH4_7g07160

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013938
Physical Location & Seq
Reverse (-)
7119382 .. 7120838
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07160.t1

Sequence Viewer

Length: 1059 bp
ATGGGCTCTGCAAGCAATAGTAACCAATATCCTTGGCCACCGTATGAGTCTTTCAAAGACTGTTCTCAAGGAGTTTGCAGCATCTACTGCCCACAATGGTGTTACATGATCTTTGCTCCTCCACCACCTTCCGAGTTGGGCGACAGCTCCGAAGAGGGTTCTGGTATAAACTTCTCTCCTCTCATTATTGCCCTAATTGGCATCGTTGCTAGTGCTTTTATTCTTGTCACGTACTACACCATCATATCCAAGTATTGCCGGCGACGTACCGGCGCTAGGGATATTGACAGGGAAGCGAATCCGAACACGGTTAATGAATCGTGGCAAGGCTCTAACACTGGTATGGAAGAGTCACTGATCAAGTCCATCACGGTTCACAAGTTTAAGAAGAATGATGGGGTGGTAGAAGGTACAGACTGTTCTGTTTGTTTGAGTGAGTTCGAAGAAAATGAGAGCTTAAGGCTATTGCCAAAGTGCAGCCATGCTTTTCATGTTCCTTGTATTGATGCTTGGCTCAAGTCACACTCTAGTTGTCCGCTTTGTCGGTCCAATATTGCTGCTCCTGCTATTGCCTTGGTGCCTCCTGCTCATCATCGTCGACAAGTTTTGCCTTCTGTTGAAGATAACTCACAGCTGGAGCGGATCAATCAATACCAGCATACAAGTAGTGGAAGTGTCTTGGTGGTTCAAGATAGGGAAGAAGAGAGCTTTCGTGTTCAAAATCATGAGATCCAGAGATTAAGAAGATCGGTATCTTTGATTGAGGTGTTGAATTTACATAATGATGAAGATGATGAGGACTTGGAAAACCAGATGGAGCATTTCCACTTTTCTATGGATCGAAGCGAGCAATTTCCGATGCAGAATTTTGAGTTTTGTATGAAAACAGGGTCCTCAAAAGGAGCTGTGTCTGGGGAACAGAATTCAAAATTCAACAATATTAGAAATGAAGTTGTGAGCTTGGTAAAGGGACCTCTTGTCTTGAAGAGATCTATTTCAACTGGGAGATTTGGGTTCACAAGGTATGCAAAGGAAAACAACTCTGTTATTCCTAATTAA

Protein Analysis

353

Amino Acids

39.62

Weight (kDa)

5.7

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 139 - 182 1.3e-14 Ring finger domain
zf-RING_11 PF17123 139 - 168 1.6e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 140 - 181 2.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 140 - 181 4.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 141 - 182 1.2e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03550 AT5G17600
fragaria_vesca FvH4_7g07160
malus_domestica MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica Prupe.2G098800_v2.0.a1
pyrus_communis pycom02g20470 pycom07g06130
rosa_chinensis RchiOBHm_Chr1g0337191
rosa_laevigata RLG00000029301
rosa_multiflora Rmu_sc0002160.1_g000007
rosa_roxburghii Rroxscaffold_4G00314890
rosa_rugosa Rorug01G0132000.1
rosa_samantha Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana Rw1G012480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 577
AccBSI CCGCTC 1 cut(s) 640
AccI GTMKAC 1 cut(s) 598
AciI CCGC 2 cut(s) 536, 640
AclWI GGATC 3 cut(s) 650, 724, 846
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 4 cut(s) 772, 865, 922, 929
AfaI GTAC 3 cut(s) 233, 268, 412
AfiI CCNNNNNNNGG 1 cut(s) 276
AflII CTTAAG 1 cut(s) 457
AgsI TTSAA 9 cut(s) 55, 620, 689, 719, 772, 927, 934, 985, 999
AhdI GACNNNNNGTC 1 cut(s) 977
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 6 cut(s) 147, 456, 634, 708, 905, 960
AluI AGCT 6 cut(s) 147, 456, 634, 708, 905, 960
AlwI GGATC 3 cut(s) 650, 724, 846
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 78, 477, 557
ApoI RAATTY 4 cut(s) 772, 865, 922, 929
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 546, 891, 971
AsuII TTCGAA 1 cut(s) 441
AvaII GGWCC 3 cut(s) 546, 891, 971
BalI TGGCCA 1 cut(s) 37
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 90, 489, 544
BccI CCATC 4 cut(s) 248, 374, 389, 808
BclI TGATCA 1 cut(s) 357
BfaI CTAG 3 cut(s) 210, 276, 528
BfoI RGCGCY 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 457
BglII AGATCT 1 cut(s) 989
BisI GCNGC 3 cut(s) 79, 478, 558
BlsI GCNGC 3 cut(s) 80, 479, 559
Bme18I GGWCC 3 cut(s) 546, 891, 971
BmeRI GACNNNNNGTC 1 cut(s) 977
BmgT120I GGNCC 3 cut(s) 546, 891, 971
BmiI GGNNCC 3 cut(s) 579, 892, 972
BmrI ACTGGG 1 cut(s) 1011
BmsI GCATC 4 cut(s) 90, 210, 496, 849
BmuI ACTGGG 1 cut(s) 1011
BpmI CTGGAG 1 cut(s) 656
Bpu14I TTCGAA 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 51, 500
BsaAI YACGTR 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 751
BsaJI CCNNGG 2 cut(s) 32, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 2 cut(s) 258, 269
Bse1I ACTGG 2 cut(s) 343, 1006
Bse8I GATNNNNATC 1 cut(s) 751
BseDI CCNNGG 2 cut(s) 32, 573
BseJI GATNNNNATC 1 cut(s) 751
BseLI CCNNNNNNNGG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 343, 1006
BseRI GAGGAG 2 cut(s) 108, 168
BseXI GCAGC 3 cut(s) 90, 489, 544
BsgI GTGCAG 1 cut(s) 496
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 577
BsiSI CCGG 2 cut(s) 259, 270
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 984
BsnI GGCC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
BspACI CCGC 2 cut(s) 536, 640
BspANI GGCC 1 cut(s) 37
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 3 cut(s) 579, 892, 972
BspPI GGATC 3 cut(s) 650, 724, 846
BspT104I TTCGAA 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 577
BspTI CTTAAG 1 cut(s) 457
BsrBI CCGCTC 1 cut(s) 640
BsrFI RCCGGY 2 cut(s) 258, 269
BsrI ACTGG 2 cut(s) 343, 1006
BssAI RCCGGY 2 cut(s) 258, 269
BssECI CCNNGG 2 cut(s) 32, 573
BssMI GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
BssT1I CCWWGG 2 cut(s) 32, 573
Bst4CI ACNGT 5 cut(s) 42, 62, 310, 373, 419
Bst6I CTCTTC 4 cut(s) 147, 342, 696, 980
BstAFI CTTAAG 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 3 cut(s) 13, 260, 848
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 7 cut(s) 111, 360, 645, 732, 749, 841, 992
BstMBI GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
BstMWI GCNNNNNNNGC 3 cut(s) 12, 87, 563
BstV1I GCAGC 3 cut(s) 90, 489, 544
BstX2I RGATCY 2 cut(s) 729, 989
BstYI RGATCY 2 cut(s) 729, 989
BsuRI GGCC 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 336, 353
Cac8I GCNNGC 3 cut(s) 13, 260, 848
CciI TCATGA 1 cut(s) 724
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 2 cut(s) 258, 269
Cfr13I GGNCC 3 cut(s) 546, 891, 971
Csp6I GTAC 3 cut(s) 232, 267, 411
CviAII CATG 4 cut(s) 106, 482, 491, 725
CviQI GTAC 3 cut(s) 232, 267, 411
DpnI GATC 7 cut(s) 110, 359, 644, 731, 748, 840, 991
DpnII GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
DriI GACNNNNNGTC 1 cut(s) 977
EaeI YGGCCR 1 cut(s) 35
Eam1104I CTCTTC 4 cut(s) 147, 342, 696, 980
Eam1105I GACNNNNNGTC 1 cut(s) 977
EarI CTCTTC 4 cut(s) 147, 342, 696, 980
Eco130I CCWWGG 2 cut(s) 32, 573
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 546, 891, 971
EcoO109I RGGNCCY 2 cut(s) 891, 971
EcoRI GAATTC 1 cut(s) 922
EcoT14I CCWWGG 2 cut(s) 32, 573
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 32, 573
FaeI CATG 4 cut(s) 109, 485, 494, 728
FaqI GGGAC 1 cut(s) 984
FatI CATG 4 cut(s) 105, 481, 490, 724
FbaI TGATCA 1 cut(s) 357
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 3 cut(s) 79, 478, 558
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 79, 478, 558
FspBI CTAG 3 cut(s) 210, 276, 528
GlaI GCGC 1 cut(s) 274
GluI GCNGC 3 cut(s) 79, 478, 558
GsuI CTGGAG 1 cut(s) 656
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 1 cut(s) 37
HapII CCGG 2 cut(s) 259, 270
HhaI GCGC 1 cut(s) 275
Hin1II CATG 4 cut(s) 109, 485, 494, 728
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 1 cut(s) 599
HindII GTYRAC 1 cut(s) 599
HinfI GANTC 4 cut(s) 47, 298, 317, 350
HpaII CCGG 2 cut(s) 259, 270
Hpy166II GTNNAC 3 cut(s) 376, 599, 1017
Hpy188I TCNGA 4 cut(s) 133, 151, 303, 858
Hpy188III TCNNGA 4 cut(s) 689, 725, 733, 982
Hpy8I GTNNAC 3 cut(s) 376, 599, 1017
Hpy99I CGWCG 2 cut(s) 267, 600
HpyAV CCTTC 3 cut(s) 138, 401, 621
HpyCH4III ACNGT 5 cut(s) 42, 62, 310, 373, 419
HpyCH4IV ACGT 2 cut(s) 230, 265
HpyCH4V TGCA 5 cut(s) 11, 78, 477, 862, 1028
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 87, 563
HpySE526I ACGT 2 cut(s) 230, 265
Hsp92II CATG 4 cut(s) 109, 485, 494, 728
HspAI GCGC 1 cut(s) 273
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
LmnI GCTCC 6 cut(s) 121, 152, 565, 637, 817, 902
Lsp1109I GCAGC 3 cut(s) 90, 489, 544
LweI GCATC 4 cut(s) 90, 210, 496, 849
MaeI CTAG 3 cut(s) 210, 276, 528
MaeII ACGT 2 cut(s) 230, 265
MaeIII GTNAC 5 cut(s) 20, 101, 226, 351, 519
MalI GATC 7 cut(s) 110, 359, 644, 731, 748, 840, 991
MbiI CCGCTC 1 cut(s) 640
MboI GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
MflI RGATCY 2 cut(s) 729, 989
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 7 cut(s) 195, 772, 851, 865, 922, 929, 1054
MluNI TGGCCA 1 cut(s) 37
MlyI GAGTC 2 cut(s) 56, 359
MnlI CCTC 8 cut(s) 129, 148, 189, 591, 757, 790, 904, 984
Mox20I TGGCCA 1 cut(s) 37
MroNI GCCGGC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 37
MseI TTAA 5 cut(s) 312, 384, 458, 740, 1057
MslI CAYNNNNRTG 3 cut(s) 97, 341, 783
Msp20I TGGCCA 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 634
MspCI CTTAAG 1 cut(s) 457
MspI CCGG 2 cut(s) 259, 270
MwoI GCNNNNNNNGC 3 cut(s) 12, 87, 563
NaeI GCCGGC 1 cut(s) 260
NdeII GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 4 cut(s) 109, 485, 494, 728
NlaIV GGNNCC 3 cut(s) 579, 892, 972
NmuCI GTSAC 3 cut(s) 226, 351, 519
NspV TTCGAA 1 cut(s) 441
OliI CACNNNNGTG 1 cut(s) 97
PagI TCATGA 1 cut(s) 724
PdiI GCCGGC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 298, 317
PkrI GCNGC 3 cut(s) 80, 479, 559
PleI GAGTC 2 cut(s) 55, 358
PpsI GAGTC 2 cut(s) 55, 358
Ppu21I YACGTR 1 cut(s) 231
PpuMI RGGWCCY 2 cut(s) 891, 971
Psp5II RGGWCCY 2 cut(s) 891, 971
PspN4I GGNNCC 3 cut(s) 579, 892, 972
PspPI GGNCC 3 cut(s) 546, 891, 971
PspPPI RGGWCCY 2 cut(s) 891, 971
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
PsuI RGATCY 2 cut(s) 729, 989
PvuII CAGCTG 1 cut(s) 634
RsaI GTAC 3 cut(s) 233, 268, 412
RsaNI GTAC 3 cut(s) 232, 267, 411
RseI CAYNNNNRTG 3 cut(s) 97, 341, 783
SalI GTCGAC 1 cut(s) 597
SaqAI TTAA 5 cut(s) 312, 384, 458, 740, 1057
SatI GCNGC 3 cut(s) 79, 478, 558
Sau3AI GATC 7 cut(s) 108, 357, 642, 729, 746, 838, 989
Sau96I GGNCC 3 cut(s) 546, 891, 971
SchI GAGTC 2 cut(s) 56, 359
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 4 cut(s) 90, 210, 496, 849
SfuI TTCGAA 1 cut(s) 441
SinI GGWCC 3 cut(s) 546, 891, 971
SmiMI CAYNNNNRTG 3 cut(s) 97, 341, 783
SmlI CTYRAG 3 cut(s) 66, 457, 515
SmoI CTYRAG 3 cut(s) 66, 457, 515
Sse9I AATT 7 cut(s) 195, 772, 851, 865, 922, 929, 1054
SsiI CCGC 2 cut(s) 536, 640
SspI AATATT 2 cut(s) 553, 940
SspMI CTAG 3 cut(s) 210, 276, 528
StyI CCWWGG 2 cut(s) 32, 573
TaaI ACNGT 5 cut(s) 42, 62, 310, 373, 419
TaiI ACGT 2 cut(s) 233, 268
TaqI TCGA 3 cut(s) 441, 598, 841
TaqII GACCGA 1 cut(s) 534
TasI AATT 7 cut(s) 195, 772, 851, 865, 922, 929, 1054
TfiI GAWTC 2 cut(s) 298, 317
Tru1I TTAA 5 cut(s) 312, 384, 458, 740, 1057
Tru9I TTAA 5 cut(s) 312, 384, 458, 740, 1057
TscAI CASTG 2 cut(s) 343, 360
TseFI GTSAC 3 cut(s) 226, 351, 519
TseI GCWGC 3 cut(s) 78, 477, 557
Tsp45I GTSAC 3 cut(s) 226, 351, 519
TspDTI ATGAA 5 cut(s) 330, 479, 801, 896, 963
TspRI CASTG 2 cut(s) 343, 360
Vha464I CTTAAG 1 cut(s) 457
VpaK11BI GGWCC 3 cut(s) 546, 891, 971
XapI RAATTY 4 cut(s) 772, 865, 922, 929
XmiI GTMKAC 1 cut(s) 598
XspI CTAG 3 cut(s) 210, 276, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.