MD07G1077600.v1.1

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
7408477 .. 7409562
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1077600.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGGCTCTGCAGGAAACCAAAATCCATGGGCAACATATGACACATACAAAGATTGTTCCCAAGGGATTTGCAGCATCTACTGCCCTCAGTGGTGCTATATCGTTGGTCCTCCACCTGCATTTGATTTGGCCGAAACCGATGATCAAAACCAACAAGACTCTCCAACAGATCTCTCTCCTCTCATTATAGCAATCATTGGCATCTTTGCTAGTGCCTTCATTCTAGTCACTTACTACACCATCATAACCAGATACTGCCGGCGAAGAGGCAGTGATGGCGCTCGAGACATGGAAATGGACAGCTCGAATCCAAACCTAGTTAGTGAATCGATGCCAGGCTCAAATAACGGTCTGGATGAGTCCCTGATCAAGTCCATCACGGTTCACAAGTACAAGAAAGGTGATATGCTTGTGGAAGGCACCGATTGCTCGGTTTGCTTAAGTGAGTTTGAAGAAAATGAGAGCCTGAGGCTGTTGCCAAAATGTAACCATGCTTTCCATGTTCCTTGCATTGATACTTGGCTCAAATCTCATTCTAGTTGTCCGCTGTGCCGGTCGAACATTGCTGCTCCTGCCATTGCTTTGGTGCCTCATCAACAACAAGCGGTGCCTCCGGTCGATGGAAATCAACAGGAGGAGGTGAACGCGTCTGCTTCGGAATACCAACACAGGAGTAATGTAAGTATTTTGGTGGTTCAAGATAATTCGGACGAGGTTGTTGGTCAGTTGGAGAGTAGAGTGAGCAGTTGTGAGATTGGACAAGATCATGGGATCCAGCAGCAATTGAGGAGATCAGTTTCCATTGCTGATGTGTTGCATTTGCATGATAGTGAAGATGATGACGAGGACTTGGAAAATCAGATGGGAAGTGCCCAATTTTATAGCGAAAATCTTCAATTTTCCATGGAAATTGGATCATCAAAAGGAGTTGATCAAGAACAGAATTCCAAATCCAGTAACAACCCTAGAAGTAGTGGAGTTTTCAGCTTGGTAAAGGGTCCTCTGGTACTGAAGAGATCAAGTTCAACAGGGCGATTAGTGTTGTCAAGGTATGGAAAGGAAAAGAATTCTATAATTCCTAATTGA

Protein Analysis

362

Amino Acids

39.72

Weight (kDa)

4.8

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 142 - 185 1.5e-14 Ring finger domain
zf-RING_11 PF17123 142 - 171 3.3e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 143 - 184 7e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 143 - 184 2.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 144 - 185 5e-09 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 158 - 188 8.5e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03550 AT5G17600
fragaria_vesca FvH4_7g07160
malus_domestica MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica Prupe.2G098800_v2.0.a1
pyrus_communis pycom02g20470 pycom07g06130
rosa_chinensis RchiOBHm_Chr1g0337191
rosa_laevigata RLG00000029301
rosa_multiflora Rmu_sc0002160.1_g000007
rosa_roxburghii Rroxscaffold_4G00314890
rosa_rugosa Rorug01G0132000.1
rosa_samantha Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana Rw1G012480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 124
AccB1I GGYRCC 3 cut(s) 419, 586, 607
AccII CGCG 1 cut(s) 647
AciI CCGC 2 cut(s) 545, 605
AclWI GGATC 3 cut(s) 766, 779, 922
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 2 cut(s) 943, 1066
AcuI CTGAAG 1 cut(s) 1031
AfaI GTAC 2 cut(s) 392, 1008
AfiI CCNNNNNNNGG 1 cut(s) 620
AflII CTTAAG 1 cut(s) 439
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 4 cut(s) 452, 698, 896, 1026
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 2 cut(s) 303, 987
AluI AGCT 2 cut(s) 303, 987
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 3 cut(s) 766, 779, 922
AlwNI CAGNNNCTG 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 72, 566, 778
ApoI RAATTY 2 cut(s) 943, 1066
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 107, 998
AsuHPI GGTGA 2 cut(s) 413, 652
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 2 cut(s) 107, 998
AxyI CCTNAGG 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 874
BamHI GGATCC 1 cut(s) 771
BanI GGYRCC 3 cut(s) 419, 586, 607
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 84, 553, 790
BccI CCATC 5 cut(s) 248, 269, 383, 614, 856
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 3 cut(s) 142, 366, 931
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 5 cut(s) 210, 224, 317, 537, 966
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 439
BfuAI ACCTGC 1 cut(s) 124
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 73, 567, 779
BlsI GCNGC 3 cut(s) 74, 568, 780
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 2 cut(s) 107, 998
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 107, 998
BmiI GGNNCC 5 cut(s) 421, 588, 609, 773, 999
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 3 cut(s) 84, 210, 321
Bsa29I ATCGAT 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 624
BsaJI CCNNGG 3 cut(s) 26, 61, 903
BsaWI WCCGGW 1 cut(s) 613
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse118I RCCGGY 2 cut(s) 258, 552
Bse1I ACTGG 1 cut(s) 954
Bse21I CCTNAGG 1 cut(s) 467
Bse3DI GCAATG 3 cut(s) 561, 576, 801
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 26, 61, 903
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 3 cut(s) 561, 576, 801
BseMII CTCAG 2 cut(s) 101, 458
BseNI ACTGG 1 cut(s) 954
BseRI GAGGAG 3 cut(s) 168, 650, 802
BseSI GKGCMC 1 cut(s) 874
BseXI GCAGC 3 cut(s) 84, 553, 790
Bsh1236I CGCG 1 cut(s) 647
Bsh1285I CGRYCG 2 cut(s) 557, 618
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 3 cut(s) 419, 586, 607
BshVI ATCGAT 1 cut(s) 329
BsiEI CGRYCG 2 cut(s) 557, 618
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 3 cut(s) 259, 553, 614
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 2 cut(s) 8, 874
Bsp143I GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
Bsp19I CCATGG 2 cut(s) 26, 903
BspACI CCGC 2 cut(s) 545, 605
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 100, 459
BspDI ATCGAT 1 cut(s) 329
BspFNI CGCG 1 cut(s) 647
BspLI GGNNCC 5 cut(s) 421, 588, 609, 773, 999
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 3 cut(s) 766, 779, 922
BspT107I GGYRCC 3 cut(s) 419, 586, 607
BspTI CTTAAG 1 cut(s) 439
BsrDI GCAATG 3 cut(s) 561, 576, 801
BsrFI RCCGGY 2 cut(s) 258, 552
BsrI ACTGG 1 cut(s) 954
BssAI RCCGGY 2 cut(s) 258, 552
BssECI CCNNGG 3 cut(s) 26, 61, 903
BssMI GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
BssT1I CCWWGG 3 cut(s) 26, 61, 903
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 350, 382
Bst6I CTCTTC 2 cut(s) 259, 1007
BstAFI CTTAAG 1 cut(s) 439
BstAPI GCANNNNNTGC 2 cut(s) 81, 426
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 87, 467
BstDSI CCRYGG 2 cut(s) 26, 903
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 647
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 9 cut(s) 145, 172, 369, 766, 774, 794, 917, 934, 1019
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
BstMCI CGRYCG 2 cut(s) 557, 618
BstMWI GCNNNNNNNGC 5 cut(s) 81, 276, 426, 435, 572
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 874
BstUI CGCG 1 cut(s) 647
BstV1I GCAGC 3 cut(s) 84, 553, 790
BstX2I RGATCY 2 cut(s) 169, 771
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 169, 771
Bsu15I ATCGAT 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 467
BsuRI GGCC 1 cut(s) 131
BsuTUI ATCGAT 1 cut(s) 329
BtgI CCRYGG 2 cut(s) 26, 903
BtsCI GGATG 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 95, 277
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 260
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 258, 552
Cfr13I GGNCC 2 cut(s) 107, 998
ClaI ATCGAT 1 cut(s) 329
CseI GACGC 1 cut(s) 636
Csp6I GTAC 2 cut(s) 391, 1007
CviAII CATG 7 cut(s) 27, 289, 491, 500, 767, 824, 904
CviJI RGCY 8 cut(s) 6, 131, 303, 339, 465, 472, 523, 987
CviKI_1 RGCY 8 cut(s) 6, 131, 303, 339, 465, 472, 523, 987
CviQI GTAC 2 cut(s) 391, 1007
DdeI CTNAG 2 cut(s) 87, 467
DpnI GATC 9 cut(s) 144, 171, 368, 765, 773, 793, 916, 933, 1018
DpnII GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 259, 1007
EarI CTCTTC 2 cut(s) 259, 1007
Eco130I CCWWGG 3 cut(s) 26, 61, 903
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 107, 998
Eco57I CTGAAG 1 cut(s) 1031
Eco81I CCTNAGG 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 998
EcoRI GAATTC 2 cut(s) 943, 1066
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 26, 61, 903
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 26, 61, 903
FaeI CATG 7 cut(s) 30, 292, 494, 503, 770, 827, 907
FaqI GGGAC 1 cut(s) 346
FatI CATG 7 cut(s) 26, 288, 490, 499, 766, 823, 903
FauNDI CATATG 1 cut(s) 37
FbaI TGATCA 3 cut(s) 142, 366, 931
Fnu4HI GCNGC 3 cut(s) 73, 567, 779
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 73, 567, 779
FspBI CTAG 5 cut(s) 210, 224, 317, 537, 966
GlaI GCGC 1 cut(s) 280
GluI GCNGC 3 cut(s) 73, 567, 779
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 131
HapII CCGG 3 cut(s) 259, 553, 614
HgaI GACGC 1 cut(s) 636
HhaI GCGC 1 cut(s) 281
Hin1II CATG 7 cut(s) 30, 292, 494, 503, 770, 827, 907
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 4 cut(s) 158, 307, 326, 359
HpaII CCGG 3 cut(s) 259, 553, 614
HphI GGTGA 2 cut(s) 413, 652
Hpy166II GTNNAC 2 cut(s) 385, 643
Hpy188I TCNGA 3 cut(s) 658, 709, 861
Hpy188III TCNNGA 4 cut(s) 284, 353, 698, 935
Hpy8I GTNNAC 2 cut(s) 385, 643
HpyAV CCTTC 2 cut(s) 226, 410
HpyCH4III ACNGT 2 cut(s) 350, 382
HpyCH4V TGCA 6 cut(s) 11, 72, 119, 510, 817, 823
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 276, 426, 435, 572
HpyF3I CTNAG 2 cut(s) 87, 467
Hsp92II CATG 7 cut(s) 30, 292, 494, 503, 770, 827, 907
HspAI GCGC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Ksp22I TGATCA 3 cut(s) 142, 366, 931
Kzo9I GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 3 cut(s) 84, 553, 790
LweI GCATC 3 cut(s) 84, 210, 321
MaeI CTAG 5 cut(s) 210, 224, 317, 537, 966
MaeIII GTNAC 3 cut(s) 226, 485, 956
MalI GATC 9 cut(s) 144, 171, 368, 765, 773, 793, 916, 933, 1018
MboI GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
MboII GAAGA 5 cut(s) 276, 464, 845, 884, 1024
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 2 cut(s) 169, 771
MhlI GDGCHC 2 cut(s) 8, 874
MluCI AATT 9 cut(s) 703, 782, 875, 896, 909, 943, 1066, 1074, 1081
MluI ACGCGT 1 cut(s) 645
MlyI GAGTC 2 cut(s) 152, 368
MmeI TCCRAC 2 cut(s) 188, 708
MroNI GCCGGC 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 3 cut(s) 293, 822, 828
MspA1I CMGCKG 1 cut(s) 547
MspCI CTTAAG 1 cut(s) 439
MspI CCGG 3 cut(s) 259, 553, 614
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 782
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 647
MwoI GCNNNNNNNGC 5 cut(s) 81, 276, 426, 435, 572
NaeI GCCGGC 1 cut(s) 260
NcoI CCATGG 2 cut(s) 26, 903
NdeI CATATG 1 cut(s) 37
NdeII GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 7 cut(s) 30, 292, 494, 503, 770, 827, 907
NlaIV GGNNCC 5 cut(s) 421, 588, 609, 773, 999
NmuCI GTSAC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 282
PaqCI CACCTGC 1 cut(s) 124
PdiI GCCGGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 2 cut(s) 307, 326
PkrI GCNGC 3 cut(s) 74, 568, 780
PleI GAGTC 2 cut(s) 152, 367
PpsI GAGTC 2 cut(s) 152, 367
PpuMI RGGWCCY 1 cut(s) 998
Psp5II RGGWCCY 1 cut(s) 998
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 5 cut(s) 421, 588, 609, 773, 999
PspPI GGNCC 2 cut(s) 107, 998
PspPPI RGGWCCY 1 cut(s) 998
PstI CTGCAG 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 2 cut(s) 169, 771
RsaI GTAC 2 cut(s) 392, 1008
RsaNI GTAC 2 cut(s) 391, 1007
RseI CAYNNNNRTG 3 cut(s) 293, 822, 828
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 3 cut(s) 73, 567, 779
Sau3AI GATC 9 cut(s) 142, 169, 366, 763, 771, 791, 914, 931, 1016
Sau96I GGNCC 2 cut(s) 107, 998
SchI GAGTC 2 cut(s) 152, 368
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 8, 874
SetI ASST 8 cut(s) 118, 305, 318, 403, 642, 717, 989, 1052
SfaNI GCATC 3 cut(s) 84, 210, 321
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 282
SinI GGWCC 2 cut(s) 107, 998
SlaI CTCGAG 1 cut(s) 282
SmiMI CAYNNNNRTG 3 cut(s) 293, 822, 828
SmlI CTYRAG 2 cut(s) 282, 439
SmoI CTYRAG 2 cut(s) 282, 439
Sse9I AATT 9 cut(s) 703, 782, 875, 896, 909, 943, 1066, 1074, 1081
SsiI CCGC 2 cut(s) 545, 605
SspMI CTAG 5 cut(s) 210, 224, 317, 537, 966
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 3 cut(s) 26, 61, 903
TaaI ACNGT 2 cut(s) 350, 382
TaqI TCGA 5 cut(s) 283, 305, 329, 557, 618
TasI AATT 9 cut(s) 703, 782, 875, 896, 909, 943, 1066, 1074, 1081
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 2 cut(s) 307, 326
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 2 cut(s) 95, 277
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 72, 566, 778
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 2 cut(s) 95, 277
Vha464I CTTAAG 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 107, 998
XapI RAATTY 2 cut(s) 943, 1066
XhoI CTCGAG 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 5 cut(s) 210, 224, 317, 537, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.