Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Forward (+)

28728674 .. 28729726

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1239200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGCTCTGCAGGAAACCAAAATCCATGGGCACCATATGACTCATACAAAGATTGTTCCCAAGGGATTTGCAGCATCTACTGCTCTAAATGGTGCTATATCATTGGCCCTCCTCCTCCTTCACTCGATTTCACCGAAGCCGATGACCAAAACCATGGCTCTCCAACAGATCTCTCTCCTCTCATTATAGCAATCATTGGCATCTTTGCTAGTGCCTTCATTCTAGTCACTTACTACACTGTTATATCCAAATACTGCAGGCGAAGAGGAAGTGATGGAGCTCGAGACACGAACATGGACAGTTCGAATCCAAACCTAGTTAGTGAATCGTGGCAAGGCTCAAATAACGGTCTGGATGAGTCCCTGATCAAGTCTATCACGGTTCACAAGTACAAGAAAGGTGATAAGCTTGTGGAAGGCACAGACTGCTCGGTATGCTTAAGTGAGTTTGAAGAAAATGAGAGCCTGAGGCTGTTGCCGAAATGTAGCCATGCTTTCCATGTTCCTTGCATTGATACTTGGCTCAAATCTCACTCCAGTTGTCCGCTATGTCGTTCAAACATTGCTGCTCCTGCCATTGCTCTTGTTCCTCATCAGCAACTAGCGCTGCCTCCGGTTGAAGAAAATCCACAGGAGGAGGTGAATGTGTCCGCTTCGGAATACCAACATAGGAGTAATGAAAATATTTTGGTGGTTCAAGATAACTCGGAAGAGGTTGTTAGTCAGTTGGAGAGTAGAGTGAGCAGTTGTGAGATTGAACAAGATCATGGGATCCAGCAGCAGTTGAGGAGATCAGTTTCCATTGCTGATGTGTTGCATTTGCATGATAGTGAAGATGATGATGAGGACTTGGAAAATCAGATGGGAAGTGCCCAATTTTCCATGGAAATTGGATCATCAAAAGGAGTTGATCAAGAACAGAATTTCAAATCCAGTAACAGCCCTAGAAGTAGTGGAGTTTTCAGCTTGGTAAAGGGTCCTCTTGTGCTGAAGAGATCAACTTCAAAAGGGAGCTTAGTTTCTCAAGGTAAGGAAGGGAAAAGAATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

351

Amino Acids

38.47

Weight (kDa)

4.99

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	142 - 185	1.5e-14	Ring finger domain
zf-RING_11	PF17123	142 - 171	1.6e-11	RING-like zinc finger
zf-rbx1	PF12678	143 - 185	6.5e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	143 - 184	8.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	143 - 184	4.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	158 - 188	8e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AciI	CCGC	2 cut(s)	545, 651
AclWI	GGATC	3 cut(s)	766, 779, 901
AcsI	RAATTY	2 cut(s)	922, 1044
AcuI	CTGAAG	1 cut(s)	1010
AfaI	GTAC	1 cut(s)	392
AfeI	AGCGCT	1 cut(s)	606
AflII	CTTAAG	1 cut(s)	439
AgsI	TTSAA	7 cut(s)	452, 558, 620, 698, 758, 928, 1005
AluBI	AGCT	4 cut(s)	281, 409, 966, 1014
AluI	AGCT	4 cut(s)	281, 409, 966, 1014
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	766, 779, 901
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	606
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	72, 566, 607, 778
ApoI	RAATTY	2 cut(s)	922, 1044
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	107, 977
AsuHPI	GGTGA	3 cut(s)	124, 413, 652
AsuII	TTCGAA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	977
AxyI	CCTNAGG	1 cut(s)	467
BaeGI	GKGCMC	2 cut(s)	34, 874
BamHI	GGATCC	1 cut(s)	771
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	8, 283
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	4 cut(s)	84, 553, 594, 790
BccI	CCATC	2 cut(s)	269, 856
BclI	TGATCA	2 cut(s)	366, 910
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	5 cut(s)	210, 224, 317, 602, 945
BfmI	CTRYAG	2 cut(s)	9, 256
BfoI	RGCGCY	1 cut(s)	608
BfrI	CTTAAG	1 cut(s)	439
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	4 cut(s)	73, 567, 608, 779
BlsI	GCNGC	4 cut(s)	74, 568, 609, 780
Bme18I	GGWCC	1 cut(s)	977
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	107, 977
BmiI	GGNNCC	3 cut(s)	33, 773, 978
BmsI	GCATC	2 cut(s)	84, 210
BpmI	CTGGAG	1 cut(s)	520
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	1008
BsaJI	CCNNGG	4 cut(s)	26, 61, 154, 882
BsaWI	WCCGGW	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	537, 933
Bse21I	CCTNAGG	1 cut(s)	467
Bse3DI	GCAATG	3 cut(s)	561, 576, 801
BseDI	CCNNGG	4 cut(s)	26, 61, 154, 882
BseGI	GGATG	1 cut(s)	361
BseMI	GCAATG	3 cut(s)	561, 576, 801
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	2 cut(s)	537, 933
BseRI	GAGGAG	5 cut(s)	102, 105, 168, 650, 802
BseSI	GKGCMC	2 cut(s)	34, 874
BseXI	GCAGC	4 cut(s)	84, 553, 594, 790
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	4 cut(s)	8, 34, 283, 874
Bsp143I	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
Bsp19I	CCATGG	3 cut(s)	26, 154, 882
BspACI	CCGC	2 cut(s)	545, 651
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	3 cut(s)	33, 773, 978
BspMAI	CTGCAG	2 cut(s)	13, 260
BspPI	GGATC	3 cut(s)	766, 779, 901
BspT104I	TTCGAA	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	439
BsrDI	GCAATG	3 cut(s)	561, 576, 801
BsrI	ACTGG	2 cut(s)	537, 933
BssECI	CCNNGG	4 cut(s)	26, 61, 154, 882
BssMI	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
BssT1I	CCWWGG	4 cut(s)	26, 61, 154, 882
Bst4CI	ACNGT	4 cut(s)	241, 302, 350, 382
Bst6I	CTCTTC	3 cut(s)	259, 705, 986
BstAFI	CTTAAG	1 cut(s)	439
BstAPI	GCANNNNNTGC	2 cut(s)	81, 426
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	467, 1015
BstDSI	CCRYGG	3 cut(s)	26, 154, 882
BstF5I	GGATG	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	8 cut(s)	172, 369, 766, 774, 794, 896, 913, 998
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 426, 435, 572, 604
BstSFI	CTRYAG	2 cut(s)	9, 256
BstSLI	GKGCMC	2 cut(s)	34, 874
BstV1I	GCAGC	4 cut(s)	84, 553, 594, 790
BstX2I	RGATCY	2 cut(s)	169, 771
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	2 cut(s)	169, 771
Bsu36I	CCTNAGG	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	3 cut(s)	26, 154, 882
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	107, 977
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	8 cut(s)	27, 155, 295, 491, 500, 767, 824, 883
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	467, 1015
DpnI	GATC	8 cut(s)	171, 368, 765, 773, 793, 895, 912, 997
DpnII	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
Eam1104I	CTCTTC	3 cut(s)	259, 705, 986
EarI	CTCTTC	3 cut(s)	259, 705, 986
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	4 cut(s)	26, 61, 154, 882
Eco24I	GRGCYC	2 cut(s)	8, 283
Eco47I	GGWCC	1 cut(s)	977
Eco47III	AGCGCT	1 cut(s)	606
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	1010
Eco81I	CCTNAGG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	977
EcoRI	GAATTC	1 cut(s)	1044
EcoT14I	CCWWGG	4 cut(s)	26, 61, 154, 882
EcoT38I	GRGCYC	2 cut(s)	8, 283
ErhI	CCWWGG	4 cut(s)	26, 61, 154, 882
FaeI	CATG	8 cut(s)	30, 158, 298, 494, 503, 770, 827, 886
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	8 cut(s)	26, 154, 294, 490, 499, 766, 823, 882
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	2 cut(s)	366, 910
Fnu4HI	GCNGC	4 cut(s)	73, 567, 608, 779
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	2 cut(s)	8, 283
Fsp4HI	GCNGC	4 cut(s)	73, 567, 608, 779
FspBI	CTAG	5 cut(s)	210, 224, 317, 602, 945
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	4 cut(s)	73, 567, 608, 779
GsuI	CTGGAG	1 cut(s)	520
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	614
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	8 cut(s)	30, 158, 298, 494, 503, 770, 827, 886
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	4 cut(s)	41, 307, 326, 359
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	3 cut(s)	124, 413, 652
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	658, 709, 861
Hpy188III	TCNNGA	4 cut(s)	284, 353, 698, 914
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	4 cut(s)	129, 226, 410, 1028
HpyCH4III	ACNGT	4 cut(s)	241, 302, 350, 382
HpyCH4V	TGCA	6 cut(s)	11, 72, 258, 510, 817, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 426, 435, 572, 604
HpyF3I	CTNAG	2 cut(s)	467, 1015
Hsp92II	CATG	8 cut(s)	30, 158, 298, 494, 503, 770, 827, 886
HspAI	GCGC	1 cut(s)	605
Ksp22I	TGATCA	2 cut(s)	366, 910
Kzo9I	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
LmnI	GCTCC	3 cut(s)	278, 574, 1011
Lsp1109I	GCAGC	4 cut(s)	84, 553, 594, 790
LweI	GCATC	2 cut(s)	84, 210
MaeI	CTAG	5 cut(s)	210, 224, 317, 602, 945
MaeIII	GTNAC	2 cut(s)	226, 935
MalI	GATC	8 cut(s)	171, 368, 765, 773, 793, 895, 912, 997
MboI	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
MboII	GAAGA	6 cut(s)	276, 464, 632, 722, 845, 1003
MflI	RGATCY	2 cut(s)	169, 771
MhlI	GDGCHC	4 cut(s)	8, 34, 283, 874
MluCI	AATT	4 cut(s)	875, 888, 922, 1044
MlyI	GAGTC	2 cut(s)	35, 368
MmeI	TCCRAC	2 cut(s)	188, 708
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	3 cut(s)	293, 822, 828
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	5 cut(s)	81, 426, 435, 572, 604
NcoI	CCATGG	3 cut(s)	26, 154, 882
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
NlaIII	CATG	8 cut(s)	30, 158, 298, 494, 503, 770, 827, 886
NlaIV	GGNNCC	3 cut(s)	33, 773, 978
NmuCI	GTSAC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	305
PaeR7I	CTCGAG	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	307, 326
PkrI	GCNGC	4 cut(s)	74, 568, 609, 780
PleI	GAGTC	2 cut(s)	35, 367
PpsI	GAGTC	2 cut(s)	35, 367
PpuMI	RGGWCCY	1 cut(s)	977
Psp124BI	GAGCTC	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	977
PspN4I	GGNNCC	3 cut(s)	33, 773, 978
PspPI	GGNCC	2 cut(s)	107, 977
PspPPI	RGGWCCY	1 cut(s)	977
PstI	CTGCAG	2 cut(s)	13, 260
PsuI	RGATCY	2 cut(s)	169, 771
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	3 cut(s)	293, 822, 828
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	4 cut(s)	73, 567, 608, 779
Sau3AI	GATC	8 cut(s)	169, 366, 763, 771, 791, 893, 910, 995
Sau96I	GGNCC	2 cut(s)	107, 977
SchI	GAGTC	2 cut(s)	35, 368
SduI	GDGCHC	4 cut(s)	8, 34, 283, 874
SetI	ASST	9 cut(s)	283, 318, 403, 411, 642, 717, 968, 1016, 1030
SfaNI	GCATC	2 cut(s)	84, 210
SfcI	CTRYAG	2 cut(s)	9, 256
Sfr274I	CTCGAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	1 cut(s)	977
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	3 cut(s)	293, 822, 828
SmlI	CTYRAG	3 cut(s)	282, 439, 1023
SmoI	CTYRAG	3 cut(s)	282, 439, 1023
Sse9I	AATT	4 cut(s)	875, 888, 922, 1044
SsiI	CCGC	2 cut(s)	545, 651
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	5 cut(s)	210, 224, 317, 602, 945
SstI	GAGCTC	1 cut(s)	283
StyI	CCWWGG	4 cut(s)	26, 61, 154, 882
TaaI	ACNGT	4 cut(s)	241, 302, 350, 382
TaqI	TCGA	3 cut(s)	126, 283, 305
TasI	AATT	4 cut(s)	875, 888, 922, 1044
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	307, 326
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	4 cut(s)	72, 566, 607, 778
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	208, 693
TspRI	CASTG	1 cut(s)	244
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	977
XapI	RAATTY	2 cut(s)	922, 1044
XhoI	CTCGAG	1 cut(s)	282
XspI	CTAG	5 cut(s)	210, 224, 317, 602, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.