Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Forward (+)

39116276 .. 39117229

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATCTTTGCTCCTCCGCCACCTTTCGAGTTCGGCGACAGCTACGAGGAGAGTTCCGGTATGAACTTCTCTCCTCTTATTATAGCCCTAATAGGCATTGTTGCAAGTGCTTTTATTCTTGTCACGTACTACACCATCATATCCAAGTATTGCCGGCGACGGGCGGGTGCTTCTGCGAGGGATATAGACAGGGAGGCGAATCCGGCCAGTGAATCGTGGCAGGGCTCTAACACTGGTATGGAAGAGTCACTGATCAAGTCCATCAAGGTTCACAAGTATAAGAAGAATGATGGGGTGGTAGAAGGCACAGACTGTTCTGTTTGTTTGAGTGAGTTCGAAGAAAATGAGAGCTTAAGGCTATTGCCAAAGTGCAGCCATGCTTTTCATGTTCCTTGTATTGATGCTTGGCTCAAGTCTCACTCTAGTTGTCCGCTTTGTCGGTCCAATATTGCTGCTCCTGCTATTGCTTTGGTGCCTCAACACCATCATCAGCAGCAAGTTAGACCTTCTGTTCAAGAAAATTCTCAGCAGGAGCTGATCAATCAATACCAGCATACAAGTAGTGGAAGTGTCATGGTGGTTCAAGATAGGGAAGAAGAGGGTTTTCATGTTCAAAATAATGAGATTCAGAGATTAAGGAGATCGGTTTCTTTGGTTGAGGTGTTGAATTTACATGATGGTGAAGATGATGAGGACTTGGAAAACCAGATGGAGCATTTCCAGTTTTCTATGGATCAAAGCGAGCAATTTTCTATGCAGAATTTCGAGTTTTCTATGGAAACAGGATCCTCAAAAGAAGCTGTGTTTGGGGAACAGAATTCAAAATTCAATAATATTAGAAGTGGAGTTTTCAGCATGGTAAAGGGTCCTCTTGGGCTGAAGAGATCTATTTCAACAGGGAGATTTGGGTTCACAAGGTATGCAAAGGAAAAGAACTCTGTTATTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

317

Amino Acids

35.68

Weight (kDa)

5.5

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	104 - 147	1.1e-14	Ring finger domain
zf-RING_11	PF17123	104 - 133	1.4e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	105 - 146	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	105 - 146	4e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	106 - 147	1e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	472
AciI	CCGC	3 cut(s)	17, 164, 431
AclWI	GGATC	3 cut(s)	741, 780, 793
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	5 cut(s)	520, 667, 760, 817, 824
AcuI	CTGAAG	1 cut(s)	899
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	352
AgsI	TTSAA	7 cut(s)	515, 584, 614, 667, 822, 829, 894
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AluBI	AGCT	4 cut(s)	42, 351, 535, 800
AluI	AGCT	4 cut(s)	42, 351, 535, 800
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	3 cut(s)	741, 780, 793
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	372, 452, 493
ApoI	RAATTY	5 cut(s)	520, 667, 760, 817, 824
AspS9I	GGNCC	2 cut(s)	441, 866
AsuHPI	GGTGA	1 cut(s)	692
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	441, 866
BamHI	GGATCC	1 cut(s)	785
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	227
BbvI	GCAGC	3 cut(s)	384, 439, 505
BccI	CCATC	6 cut(s)	143, 269, 284, 492, 671, 703
BclI	TGATCA	2 cut(s)	252, 537
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	352
BglII	AGATCT	1 cut(s)	884
BisI	GCNGC	3 cut(s)	373, 453, 494
BlsI	GCNGC	3 cut(s)	374, 454, 495
Bme18I	GGWCC	2 cut(s)	441, 866
BmgT120I	GGNCC	2 cut(s)	441, 866
BmiI	GGNNCC	3 cut(s)	474, 787, 867
BmsI	GCATC	1 cut(s)	391
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	3 cut(s)	207, 238, 721
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	3 cut(s)	207, 238, 721
BseRI	GAGGAG	2 cut(s)	62, 63
BseXI	GCAGC	3 cut(s)	384, 439, 505
BsgI	GTGCAG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	472
BsiSI	CCGG	3 cut(s)	57, 154, 203
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
BspACI	CCGC	3 cut(s)	17, 164, 431
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	474, 787, 867
BspPI	GGATC	3 cut(s)	741, 780, 793
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	472
BspTI	CTTAAG	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	153
BsrI	ACTGG	3 cut(s)	207, 238, 721
BssAI	RCCGGY	1 cut(s)	153
BssMI	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	3 cut(s)	237, 591, 875
BstAFI	CTTAAG	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	155, 743
BstDEI	CTNAG	1 cut(s)	525
BstKTI	GATC	7 cut(s)	6, 255, 540, 644, 736, 788, 887
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 458
BstV1I	GCAGC	3 cut(s)	384, 439, 505
BstX2I	RGATCY	2 cut(s)	785, 884
BstYI	RGATCY	2 cut(s)	785, 884
BsuRI	GGCC	1 cut(s)	206
BtsIMutI	CAGTG	3 cut(s)	214, 231, 248
Cac8I	GCNNGC	2 cut(s)	155, 743
CaiI	CAGNNNCTG	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	441, 866
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	6 cut(s)	377, 386, 574, 608, 674, 856
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	7 cut(s)	5, 254, 539, 643, 735, 787, 886
DpnII	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	3 cut(s)	237, 591, 875
EarI	CTCTTC	3 cut(s)	237, 591, 875
EciI	GGCGGA	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	441, 866
Eco57I	CTGAAG	1 cut(s)	899
EcoO109I	RGGNCCY	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	6 cut(s)	380, 389, 577, 611, 677, 859
FatI	CATG	6 cut(s)	376, 385, 573, 607, 673, 855
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	252, 537
Fnu4HI	GCNGC	3 cut(s)	373, 453, 494
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	373, 453, 494
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	3 cut(s)	373, 453, 494
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	3 cut(s)	57, 154, 203
Hin1II	CATG	6 cut(s)	380, 389, 577, 611, 677, 859
HinfI	GANTC	4 cut(s)	199, 212, 245, 625
HpaII	CCGG	3 cut(s)	57, 154, 203
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	2 cut(s)	271, 912
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	2 cut(s)	515, 584
Hpy8I	GTNNAC	2 cut(s)	271, 912
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	296, 516
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	4 cut(s)	104, 372, 757, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 458
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	6 cut(s)	380, 389, 577, 611, 677, 859
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Ksp22I	TGATCA	2 cut(s)	252, 537
Kzo9I	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
LmnI	GCTCC	4 cut(s)	16, 460, 532, 712
Lsp1109I	GCAGC	3 cut(s)	384, 439, 505
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	121, 246
MalI	GATC	7 cut(s)	5, 254, 539, 643, 735, 787, 886
MboI	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
MboII	GAAGA	7 cut(s)	254, 295, 350, 605, 608, 695, 892
MflI	RGATCY	2 cut(s)	785, 884
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	7 cut(s)	520, 667, 746, 760, 817, 824, 949
MlyI	GAGTC	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	153
MseI	TTAA	3 cut(s)	353, 635, 952
MslI	CAYNNNNRTG	2 cut(s)	236, 678
MspCI	CTTAAG	1 cut(s)	352
MspI	CCGG	3 cut(s)	57, 154, 203
MwoI	GCNNNNNNNGC	2 cut(s)	203, 458
NaeI	GCCGGC	1 cut(s)	155
NdeII	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	6 cut(s)	380, 389, 577, 611, 677, 859
NlaIV	GGNNCC	3 cut(s)	474, 787, 867
NmuCI	GTSAC	2 cut(s)	121, 246
NspV	TTCGAA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	199, 212, 625
PkrI	GCNGC	3 cut(s)	374, 454, 495
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	126
PpuMI	RGGWCCY	1 cut(s)	866
Psp5II	RGGWCCY	1 cut(s)	866
PspN4I	GGNNCC	3 cut(s)	474, 787, 867
PspPI	GGNCC	2 cut(s)	441, 866
PspPPI	RGGWCCY	1 cut(s)	866
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	2 cut(s)	785, 884
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	236, 678
SaqAI	TTAA	3 cut(s)	353, 635, 952
SatI	GCNGC	3 cut(s)	373, 453, 494
Sau3AI	GATC	7 cut(s)	3, 252, 537, 641, 733, 785, 884
Sau96I	GGNCC	2 cut(s)	441, 866
SchI	GAGTC	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	391
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	441, 866
SmiMI	CAYNNNNRTG	2 cut(s)	236, 678
SmlI	CTYRAG	2 cut(s)	352, 410
SmoI	CTYRAG	2 cut(s)	352, 410
Sse9I	AATT	7 cut(s)	520, 667, 746, 760, 817, 824, 949
SsiI	CCGC	3 cut(s)	17, 164, 431
SspI	AATATT	2 cut(s)	448, 835
SspMI	CTAG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	3 cut(s)	27, 336, 765
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	7 cut(s)	520, 667, 746, 760, 817, 824, 949
TfiI	GAWTC	3 cut(s)	199, 212, 625
Tru1I	TTAA	3 cut(s)	353, 635, 952
Tru9I	TTAA	3 cut(s)	353, 635, 952
TscAI	CASTG	3 cut(s)	214, 238, 255
TseFI	GTSAC	2 cut(s)	121, 246
TseI	GCWGC	3 cut(s)	372, 452, 493
Tsp45I	GTSAC	2 cut(s)	121, 246
TspDTI	ATGAA	3 cut(s)	77, 374, 596
TspRI	CASTG	3 cut(s)	214, 238, 255
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	2 cut(s)	441, 866
XapI	RAATTY	5 cut(s)	520, 667, 760, 817, 824
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.