Rh1BG121600

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013938
Physical Location & Seq
Reverse (-)
20642431 .. 20643726
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG121600.1

Sequence Viewer

Length: 1059 bp
ATGGGCTCTGCAAGCAATAATAACCAATATCCATGGCCACCATATGAGACTTTCAAAGACTGTTCTCAAGGATTTTGCAGCATCTACTGCCCACAATGGTGTTACATGATCTTTGCTCCTCCGCCACCTTTCGAGTTCGGCAACAGCTCCGAGGAGAGCGCCGGTATAAACTTCTCTCCTCTTATTATAGCCCTAATAGGCATTGTTGCAAGTGCTTGTATACTTGTCACGTACTACAGCATCATATCCAAGTATTGCCGGCGACGACCCGGTGCTTCTGCTAGGGATATTGACAGGGAGGCGAATCCGGCTAGTGAATCGTGGCAGGGCTCTAACACTGGTATGGAAGAGTCACTGATCAAGTCCATCAAGGTTCATAAGTATAAGAAGAATGATGGGGTGGTAGAAGGCACAGACTGTTCTGTTTGTTTGAGTGAGTTCCAAGAAAATGAAAACTTAAGGCTATTGCCAAAGTGCAGCCATGCTTTTCACGTTCCTTGTATTGATGCTTGGCTCAAGTCTCACTCTAGTTGTCCGCTTTGTCGGTCCAATACTGCTGCTCCTGCTATTGCTTTGGTGCCTCAACACCATAATCATCAGCAAGTATTGCCTTCTGTTGAAGAAAATCCACAGCAGGAGCTGATCAATCAATACCAGCATACAAGTAGTGGAAGTGTCATGGTGGTTCAAGATAGGGAAGAAGAGGGTTTTCGTGTTCAAAATAATGAGATTCATAGATTAAGGAGATCGGTTTCTTTGGTTGAGGTGTTGAATTTACATGATGGTGAAGATGATGAGGACTTGGAAAACCAGATGGAGCATTTCCAGTTTTCTATGGATCAAAGCGAGCAATTTTCTATGCAGAATTTCGAGTTTTCTATGGAAACAGGGTCCTCAAAAGAAGCTGTGTTTGGGGAACAGAATTCTAAATTCAATAATATTAGAAGTGGAGTTTTCAGCATGGTAAAGGGTCCTCTTGGGCTGAAGAGATCTATTTCAACAGGGAGATTTGGGTTCACAAGGTATGCAAAGGAAAAGAACTCTGTTATTCCTAATTAA

Protein Analysis

352

Amino Acids

39.63

Weight (kDa)

5.51

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 139 - 182 2.5e-14 Ring finger domain
zf-RING_11 PF17123 139 - 168 1.5e-11 RING-like zinc finger
zf-C3HC4 PF00097 140 - 181 9.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 140 - 181 4.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 145 - 182 1.7e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03550 AT5G17600
fragaria_vesca FvH4_7g07160
malus_domestica MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica Prupe.2G098800_v2.0.a1
pyrus_communis pycom02g20470 pycom07g06130
rosa_chinensis RchiOBHm_Chr1g0337191
rosa_laevigata RLG00000029301
rosa_multiflora Rmu_sc0002160.1_g000007
rosa_roxburghii Rroxscaffold_4G00314890
rosa_rugosa Rorug01G0132000.1
rosa_samantha Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana Rw1G012480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 577
AccI GTMKAC 1 cut(s) 220
AciI CCGC 2 cut(s) 122, 536
AclWI GGATC 1 cut(s) 846
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 4 cut(s) 772, 865, 922, 929
AcuI CTGAAG 1 cut(s) 1004
AfaI GTAC 1 cut(s) 233
AflII CTTAAG 1 cut(s) 457
AgsI TTSAA 7 cut(s) 55, 620, 689, 719, 772, 934, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 894, 926
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 3 cut(s) 147, 640, 905
AluI AGCT 3 cut(s) 147, 640, 905
Alw26I GTCTC 2 cut(s) 41, 525
AlwI GGATC 1 cut(s) 846
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 78, 477, 557
ApoI RAATTY 4 cut(s) 772, 865, 922, 929
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 3 cut(s) 546, 891, 971
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 797
AvaII GGWCC 3 cut(s) 546, 891, 971
BalI TGGCCA 1 cut(s) 37
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 2 cut(s) 8, 332
BbvI GCAGC 3 cut(s) 90, 489, 544
BccI CCATC 4 cut(s) 374, 389, 776, 808
BclI TGATCA 2 cut(s) 357, 642
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 41, 525
BfaI CTAG 3 cut(s) 282, 312, 528
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 457
BglII AGATCT 1 cut(s) 989
BisI GCNGC 3 cut(s) 79, 478, 558
BlsI GCNGC 3 cut(s) 80, 479, 559
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 3 cut(s) 546, 891, 971
BmgT120I GGNCC 3 cut(s) 546, 891, 971
BmiI GGNNCC 3 cut(s) 579, 892, 972
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 3 cut(s) 90, 249, 496
BpuEI CTTGAG 2 cut(s) 51, 500
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 32, 150
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bse118I RCCGGY 2 cut(s) 161, 258
Bse1I ACTGG 2 cut(s) 343, 826
BseDI CCNNGG 2 cut(s) 32, 150
BseNI ACTGG 2 cut(s) 343, 826
BseRI GAGGAG 3 cut(s) 108, 167, 168
BseXI GCAGC 3 cut(s) 90, 489, 544
BsgI GTGCAG 1 cut(s) 496
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 577
BsiSI CCGG 4 cut(s) 162, 259, 270, 308
BsmAI GTCTC 2 cut(s) 41, 525
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 8, 332
Bsp143I GATC 6 cut(s) 108, 357, 642, 746, 838, 989
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 122, 536
BspANI GGCC 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 579, 892, 972
BspPI GGATC 1 cut(s) 846
BspT107I GGYRCC 1 cut(s) 577
BspTI CTTAAG 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 161, 258
BsrI ACTGG 2 cut(s) 343, 826
BssAI RCCGGY 2 cut(s) 161, 258
BssECI CCNNGG 2 cut(s) 32, 150
BssMI GATC 6 cut(s) 108, 357, 642, 746, 838, 989
BssNAI GTATAC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 32
Bst1107I GTATAC 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 62, 419
Bst6I CTCTTC 3 cut(s) 342, 696, 980
BstAFI CTTAAG 1 cut(s) 457
BstAPI GCANNNNNTGC 2 cut(s) 87, 607
BstBAI YACGTR 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 13, 260, 848
BstDSI CCRYGG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 6 cut(s) 111, 360, 645, 749, 841, 992
BstMAI GTCTC 2 cut(s) 41, 525
BstMBI GATC 6 cut(s) 108, 357, 642, 746, 838, 989
BstMWI GCNNNNNNNGC 5 cut(s) 12, 87, 308, 563, 607
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 90, 489, 544
BstX2I RGATCY 1 cut(s) 989
BstYI RGATCY 1 cut(s) 989
BstZ17I GTATAC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 336, 353
Cac8I GCNNGC 3 cut(s) 13, 260, 848
CaiI CAGNNNCTG 1 cut(s) 640
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 2 cut(s) 161, 258
Cfr13I GGNCC 3 cut(s) 546, 891, 971
Csp6I GTAC 1 cut(s) 232
CviAII CATG 6 cut(s) 33, 106, 482, 679, 779, 961
CviQI GTAC 1 cut(s) 232
DpnI GATC 6 cut(s) 110, 359, 644, 748, 840, 991
DpnII GATC 6 cut(s) 108, 357, 642, 746, 838, 989
EaeI YGGCCR 1 cut(s) 35
Eam1104I CTCTTC 3 cut(s) 342, 696, 980
EarI CTCTTC 3 cut(s) 342, 696, 980
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 2 cut(s) 8, 332
Eco47I GGWCC 3 cut(s) 546, 891, 971
Eco57I CTGAAG 1 cut(s) 1004
EcoO109I RGGNCCY 2 cut(s) 891, 971
EcoRI GAATTC 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 2 cut(s) 8, 332
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 6 cut(s) 36, 109, 485, 682, 782, 964
FatI CATG 6 cut(s) 32, 105, 481, 678, 778, 960
FauNDI CATATG 1 cut(s) 43
FbaI TGATCA 2 cut(s) 357, 642
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 79, 478, 558
FriOI GRGCYC 2 cut(s) 8, 332
Fsp4HI GCNGC 3 cut(s) 79, 478, 558
FspBI CTAG 3 cut(s) 282, 312, 528
GlaI GCGC 1 cut(s) 160
GluI GCNGC 3 cut(s) 79, 478, 558
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 1 cut(s) 37
HapII CCGG 4 cut(s) 162, 259, 270, 308
HhaI GCGC 1 cut(s) 161
Hin1II CATG 6 cut(s) 36, 109, 485, 682, 782, 964
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 4 cut(s) 304, 317, 350, 730
HpaII CCGG 4 cut(s) 162, 259, 270, 308
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 2 cut(s) 221, 1017
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 689
Hpy8I GTNNAC 2 cut(s) 221, 1017
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 401, 621
HpyCH4III ACNGT 2 cut(s) 62, 419
HpyCH4IV ACGT 2 cut(s) 230, 492
HpyCH4V TGCA 6 cut(s) 11, 78, 209, 477, 862, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 87, 308, 563, 607
HpySE526I ACGT 2 cut(s) 230, 492
Hsp92II CATG 6 cut(s) 36, 109, 485, 682, 782, 964
HspAI GCGC 1 cut(s) 159
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Ksp22I TGATCA 2 cut(s) 357, 642
Kzo9I GATC 6 cut(s) 108, 357, 642, 746, 838, 989
LmnI GCTCC 5 cut(s) 121, 152, 565, 637, 817
Lsp1109I GCAGC 3 cut(s) 90, 489, 544
LweI GCATC 3 cut(s) 90, 249, 496
MaeI CTAG 3 cut(s) 282, 312, 528
MaeII ACGT 2 cut(s) 230, 492
MaeIII GTNAC 3 cut(s) 101, 226, 351
MalI GATC 6 cut(s) 110, 359, 644, 748, 840, 991
MboI GATC 6 cut(s) 108, 357, 642, 746, 838, 989
MboII GAAGA 7 cut(s) 359, 400, 632, 710, 713, 800, 997
MflI RGATCY 1 cut(s) 989
MhlI GDGCHC 2 cut(s) 8, 332
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 6 cut(s) 772, 851, 865, 922, 929, 1054
MluNI TGGCCA 1 cut(s) 37
MlyI GAGTC 1 cut(s) 359
Mox20I TGGCCA 1 cut(s) 37
MroNI GCCGGC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 37
MseI TTAA 3 cut(s) 458, 740, 1057
MslI CAYNNNNRTG 3 cut(s) 97, 341, 783
Msp20I TGGCCA 1 cut(s) 37
MspCI CTTAAG 1 cut(s) 457
MspI CCGG 4 cut(s) 162, 259, 270, 308
MspR9I CCNGG 1 cut(s) 270
MwoI GCNNNNNNNGC 5 cut(s) 12, 87, 308, 563, 607
NaeI GCCGGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 270
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 43
NdeII GATC 6 cut(s) 108, 357, 642, 746, 838, 989
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 6 cut(s) 36, 109, 485, 682, 782, 964
NlaIV GGNNCC 3 cut(s) 579, 892, 972
NmuCI GTSAC 2 cut(s) 226, 351
OliI CACNNNNGTG 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 304, 317, 730
PkrI GCNGC 3 cut(s) 80, 479, 559
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Ppu21I YACGTR 1 cut(s) 231
PpuMI RGGWCCY 2 cut(s) 891, 971
Psp5II RGGWCCY 2 cut(s) 891, 971
PspN4I GGNNCC 3 cut(s) 579, 892, 972
PspPI GGNCC 3 cut(s) 546, 891, 971
PspPPI RGGWCCY 2 cut(s) 891, 971
PstNI CAGNNNCTG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 989
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 3 cut(s) 97, 341, 783
SaqAI TTAA 3 cut(s) 458, 740, 1057
SatI GCNGC 3 cut(s) 79, 478, 558
Sau3AI GATC 6 cut(s) 108, 357, 642, 746, 838, 989
Sau96I GGNCC 3 cut(s) 546, 891, 971
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 2 cut(s) 8, 332
SetI ASST 9 cut(s) 130, 149, 233, 375, 495, 642, 768, 907, 1025
SfaNI GCATC 3 cut(s) 90, 249, 496
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 3 cut(s) 546, 891, 971
SmiMI CAYNNNNRTG 3 cut(s) 97, 341, 783
SmlI CTYRAG 3 cut(s) 66, 457, 515
SmoI CTYRAG 3 cut(s) 66, 457, 515
Sse9I AATT 6 cut(s) 772, 851, 865, 922, 929, 1054
SsiI CCGC 2 cut(s) 122, 536
SspI AATATT 1 cut(s) 940
SspMI CTAG 3 cut(s) 282, 312, 528
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 62, 419
TaiI ACGT 2 cut(s) 233, 495
TaqI TCGA 2 cut(s) 132, 870
TaqII GACCGA 1 cut(s) 534
TasI AATT 6 cut(s) 772, 851, 865, 922, 929, 1054
TfiI GAWTC 3 cut(s) 304, 317, 730
Tru1I TTAA 3 cut(s) 458, 740, 1057
Tru9I TTAA 3 cut(s) 458, 740, 1057
TscAI CASTG 2 cut(s) 343, 360
TseFI GTSAC 2 cut(s) 226, 351
TseI GCWGC 3 cut(s) 78, 477, 557
Tsp45I GTSAC 2 cut(s) 226, 351
TspDTI ATGAA 3 cut(s) 365, 465, 722
TspRI CASTG 2 cut(s) 343, 360
Vha464I CTTAAG 1 cut(s) 457
VpaK11BI GGWCC 3 cut(s) 546, 891, 971
XapI RAATTY 4 cut(s) 772, 865, 922, 929
XmiI GTMKAC 1 cut(s) 220
XspI CTAG 3 cut(s) 282, 312, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.