Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012289

Physical Location & Seq

Genomic Coordinates Reverse (-)

860512 .. 863428

Gene Structure 2917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGCAGACTAGAGTGTCATCACCTTTCATCTCTAGAGCTCTTTCGTCGTCATCTAACCTCAATGAGCTTCGTCGAATTCACGCCCTTGTGATCTCTCTTGGTCTTGACAGCTCCGACTTCTTCTCCGGTAAGCTTATCGACAAGTACTCTCACTTTCGTGAACCCGCCTCTTCCCTCTCTGTTTTCCGACGAGTTTCTCCGGCCAAAAATGTTTACCTCTGGAATTCAATCATCAGAGCTTTTTCTAAGAATGGTTTGTTCCCTGAAGCCCTCGAGTTTTACGGGAAACTCCGGGAATCCAAGGTTTCTCCTGATAAGTACACGTTTCCTTCGGTTATCAAAGCCTGCGCGGGATTGTTCGATGCGGAGATGGGAGATTTGGTTTATGAACAGATATTGGATATGGGTTTTGAATCGGATTTATTTGTAGGTAATGCACTTGTGGATATGTATTCGAGAATGGGATTGTTAACTAGAGCACGACAAGTGTTCGACGAAATGCCTGTGAGAGATCTCGTGTCCTGGAACAGTTTGATTTCTGGGTATAGTTCCCATGGTTACTATGAGGAAGCTTTGGAAATTTATCATGAGTTGAAGAATTCGTGGATTGTACCAGATTCCTTCACGGTTTCAAGTGTTTTGCCTGCATTTGGGAATTTGCTGGTTGTCAAACAAGGACAGGGACTTCATGGTTTTGCTCTGAAGTCAGGTGTTAATTCCGTTGTGGTGGTTAACAATGGACTAGTTGCAATGTACTTGAAATTTCGCAGACCAACGGATGCAAGACGAGTTTTTGATGAGATGGATGTTCGAGATTCTGTTAGTTACAATACTATGATCTGCGGATATCTCAAGTTAGAGATGGTTGAAGAATCCGTGAGGATGTTTTTGGAAAACTTGGATCAGTTCAAGCCTGATCTCTTAACAGTTAGTTCTGTTCTCCGTGCCTGCGGACACTTACGGGACTTGAGCTTGGCAAAGTACATTTACAACTATATGTTGAAAGCTGGATTTGTTCTTGAATCTACTGTTAGAAACATTCTAATTGACGTGTATGCAAAGTGTGGTGACATGATCACCGCAAGAGATGTTTTCAACAGCATGGAATGCAAGGATACTGTTTCGTGGAACTCGATAATCAGTGGATATATACAAAGCGGAGATCTTATGGAAGCCATGAAACTCTTCAAGATGATGATGATCATGGAAGAGCAGGCGGATCACATCACTTATTTGATGCTTATATCTGTCTCCACACGTCTAGCAGACTTGAAATTTGGGAAAGGGCTACACTCAAATGGGATAAAATCTGGAATTTGTATCGATCTTTCTGTTAGTAATGCTTTGATTGATATGTATGCGAAGTGCGGGGAAGTAGGAGATTCCTTGAAGATATTCAGTAGTATGGGAACTGGGGATACGGTAACATGGAACACGGTTATTTCAGCATGTGTTCGTTTTGGGGATTTCGCAACCGGTTTGCAGGTAACTACTCAAATGAGGAAGAGCGAAGTGGTGCCTGATATGGCTACTTTCTTAGTTACATTGCCTATGTGTGCTTCACTTGCTGCAAAACGACTAGGCAAGGAGATCCATTGTTGTCTGTTGAGGTTTGGATATGAATCAGAGTTGCAAATAGGGAATGCACTAATTGAAATGTACTCAAAATGTGGTTGTTTGGAGAATTCGTCTAGAGTCTTTGAACGTATGAGTAGAAGAGATGTTGTGACATGGACAGGAATGATCTATGCATATGGAATGTATGGCGAAGGTGAGAAAGCTCTTGAAACTTTTGCGGATATGGAAAAATCCGGTATTGTTCCCGATAGTGTTGTCTTCATTGCCATCATATATGCTTGCAGCCACTCTGGTTTGGTAGACGAAGGCTTGGCTTGCTTTGAGAAGATGAAAACTCACTACAAAATTGACCCGATGATTGAACATTATGCTTGTGTGGTCGATTTGCTGTCCCGGTCACAGAAGATTTCAAAAGCCGAAGAATTTATCCAAGCAATGCCGATAAAACCAGATGCAAGCATATGGGCATCTGTGCTAAGAGCTTGTCGAACAAGTGGGGACATGGAGACTGCTGAAAGAGTATCTAGGAGGATCATTGAACTGAACCCGGATGATCCAGGTTACTCGATTCTAGCATCAAACGCATATGCAGCCTTGAGAAAATGGGACAAAGTGAGTCTAATCCGCAAATCCTTGAAAGATAAACACATCACGAAGAATCCTGGATATAGCTGGATCGAAGTCGGTAAAAACGTTCACGTGTTCAGCTCAGGAGATGATTCAGCTCCTCAGTCAGAAGCCATCTACAAGTCACTGGAGATACTTTACAGTCTGATGGCTAAAGAAGGCTACATTCCCGATCCAAGGGAAGTGTCACAGAATCTAGAGGAAGAAGAAGAGAAGAGACGTTTAATCTGTGGGCACAGCGAGAGACTTGCTATTGCGTTTGGACTGTTGAACACAGAACCAGGGACTCCATTGCAGGTGATGAAGAACCTTCGTGTTTGTGGTGACTGTCATGAAGTCACGAAGCTGATATCGAAGATTGTGGGACGTGAGATATTAGTGCGGGATGCTAATCGATTCCATCTCTTCAAAGACGGCACTTGTAGCTGCAAAGATCGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

882

Amino Acids

99.02

Weight (kDa)

6.25

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	69 - 117	5.5e-10	PPR repeat family
PPR_2	PF13041	171 - 217	2.7e-10	PPR repeat family
PPR	PF01535	173 - 201	3.1e-08	PPR repeat
PPR_2	PF13041	371 - 416	5.7e-09	PPR repeat family
PPR	PF01535	374 - 400	8e-07	PPR repeat
PPR_2	PF13041	473 - 519	4.5e-07	PPR repeat family
PPR_2	PF13041	573 - 621	9.3e-09	PPR repeat family
E_motif	PF20431	693 - 753	7.7e-14	E motif
DYW_deaminase	PF14432	789 - 882	2.8e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03580
fragaria_vesca	FvH4_7g07570
malus_domestica	MD02G1235200.v1.1 MD02G1235800.v1.1
prunus_persica	Prupe.2G102800_v2.0.a1 Prupe.2G102800_v2.0.a1
pyrus_communis	pycom02g20250
rosa_chinensis	RchiOBHm_Chr1g0339001 RchiOBHm_Chr1g0343101
rosa_laevigata	RLG00000029204 RLG00000029208
rosa_multiflora	Rmu_sc0017585.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313330
rosa_rugosa	Rorug01G0144200.1
rosa_samantha	Rh1AG160800 Rh1BG127800 Rh1CG150300 Rh1DG164000
rosa_wichuraiana	Rw1G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2491
AasI	GACNNNNNNGTC	1 cut(s)	13
Acc36I	ACCTGC	2 cut(s)	1474, 2491
AccB1I	GGYRCC	1 cut(s)	1516
AccI	GTMKAC	1 cut(s)	1878
AccII	CGCG	1 cut(s)	350
AclI	AACGTT	1 cut(s)	2271
AclWI	GGATC	7 cut(s)	909, 1227, 1585, 2117, 2126, 2261, 2372
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	2 cut(s)	285, 722
AcvI	CACGTG	1 cut(s)	2278
AfaI	GTAC	6 cut(s)	146, 320, 612, 755, 983, 1661
AfiI	CCNNNNNNNGG	2 cut(s)	650, 2382
AflIII	ACRYGT	4 cut(s)	321, 1050, 1256, 2277
AgeI	ACCGGT	1 cut(s)	1475
AhlI	ACTAGT	1 cut(s)	742
AjiI	CACGTC	3 cut(s)	1051, 1259, 2573
AjnI	CCWGG	4 cut(s)	521, 2134, 2239, 2485
AleI	CACNNNNGTG	1 cut(s)	156
Alw21I	GWGCWC	2 cut(s)	40, 481
Alw26I	GTCTC	4 cut(s)	1255, 2078, 2416, 2443
AlwI	GGATC	7 cut(s)	909, 1227, 1585, 2117, 2126, 2261, 2372
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	4 cut(s)	1568, 1860, 2168, 2631
ArsI	GACNNNNNNTTYG	2 cut(s)	1259, 1291
AsiGI	ACCGGT	1 cut(s)	1475
Asp700I	GAANNNNTTC	2 cut(s)	1184, 1394
AspLEI	GCGC	1 cut(s)	350
AsuC2I	CCSGG	3 cut(s)	293, 1972, 2126
AsuHPI	GGTGA	6 cut(s)	12, 1069, 1079, 1784, 2515, 2540
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	2442
BanI	GGYRCC	1 cut(s)	1516
BanII	GRGCYC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	515
BbrPI	CACGTG	1 cut(s)	2278
BbsI	GAAGAC	1 cut(s)	1828
Bbv12I	GWGCWC	2 cut(s)	40, 481
BbvI	GCAGC	4 cut(s)	1555, 1872, 2180, 2618
BccI	CCATC	7 cut(s)	364, 796, 856, 1853, 2327, 2347, 2613
BceAI	ACGGC	1 cut(s)	2635
BcgI	CGANNNNNNTGC	2 cut(s)	2435, 2469
BciT130I	CCWGG	4 cut(s)	523, 2136, 2241, 2487
BciVI	GTATCC	2 cut(s)	1108, 1411
BclI	TGATCA	2 cut(s)	1074, 1200
BcnI	CCSGG	3 cut(s)	293, 1972, 2126
BcoDI	GTCTC	4 cut(s)	1255, 2078, 2416, 2443
BcuI	ACTAGT	1 cut(s)	742
BfuAI	ACCTGC	2 cut(s)	1474, 2491
BfuI	GTATCC	2 cut(s)	1108, 1411
BglII	AGATCT	2 cut(s)	511, 1162
BisI	GCNGC	4 cut(s)	1569, 1861, 2169, 2632
BlsI	GCNGC	4 cut(s)	1570, 1862, 2170, 2633
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	7 cut(s)	293, 523, 1972, 2126, 2136, 2241, 2487
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	3 cut(s)	1051, 1259, 2573
BmiI	GGNNCC	1 cut(s)	1518
BmrFI	CCNGG	7 cut(s)	293, 523, 1972, 2126, 2136, 2241, 2487
BmrI	ACTGGG	1 cut(s)	1422
BmsI	GCATC	7 cut(s)	352, 769, 1227, 2020, 2054, 2162, 2581
BmuI	ACTGGG	1 cut(s)	1422
BpiI	GAAGAC	1 cut(s)	1828
BpmI	CTGGAG	1 cut(s)	2354
Bpu10I	CCTNAGC	1 cut(s)	2287
BpuEI	CTTGAG	3 cut(s)	836, 988, 2194
BpuMI	CCSGG	3 cut(s)	293, 1972, 2126
Bsa29I	ATCGAT	2 cut(s)	1323, 2599
BsaAI	YACGTR	1 cut(s)	2278
BsaBI	GATNNNNATC	3 cut(s)	1199, 1621, 2595
BsaJI	CCNNGG	4 cut(s)	300, 553, 2381, 2486
BsaWI	WCCGGW	3 cut(s)	125, 1475, 1811
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 366, 396, 1673, 1703
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 2382
Bse118I	RCCGGY	1 cut(s)	1475
Bse1I	ACTGG	2 cut(s)	1417, 2337
Bse3DI	GCAATG	5 cut(s)	756, 1544, 1839, 2019, 2495
Bse8I	GATNNNNATC	3 cut(s)	1199, 1621, 2595
BseBI	CCWGG	4 cut(s)	523, 2136, 2241, 2487
BseCI	ATCGAT	2 cut(s)	1323, 2599
BseDI	CCNNGG	4 cut(s)	300, 553, 2381, 2486
BseGI	GGATG	5 cut(s)	784, 811, 888, 2134, 2596
BseJI	GATNNNNATC	3 cut(s)	1199, 1621, 2595
BseLI	CCNNNNNNNGG	2 cut(s)	650, 2382
BseMI	GCAATG	5 cut(s)	756, 1544, 1839, 2019, 2495
BseMII	CTCAG	2 cut(s)	2301, 2321
BseNI	ACTGG	2 cut(s)	1417, 2337
BseRI	GAGGAG	1 cut(s)	2295
BseSI	GKGCMC	1 cut(s)	2442
BseXI	GCAGC	4 cut(s)	1555, 1872, 2180, 2618
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	1516
BshTI	ACCGGT	1 cut(s)	1475
BshVI	ATCGAT	2 cut(s)	1323, 2599
BsiHKAI	GWGCWC	2 cut(s)	40, 481
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	7 cut(s)	126, 200, 292, 1476, 1812, 1972, 2126
BslFI	GGGAC	7 cut(s)	696, 977, 1954, 2090, 2198, 2503, 2583
BslI	CCNNNNNNNGG	2 cut(s)	650, 2382
BsmAI	GTCTC	4 cut(s)	1255, 2078, 2416, 2443
BsmBI	CGTCTC	1 cut(s)	2416
BsmFI	GGGAC	7 cut(s)	696, 977, 1954, 2090, 2198, 2503, 2583
BsmI	GAATGC	2 cut(s)	1112, 1648
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	40, 481, 2442
Bsp19I	CCATGG	1 cut(s)	553
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	2300, 2320
BspDI	ATCGAT	2 cut(s)	1323, 2599
BspFNI	CGCG	1 cut(s)	350
BspHI	TCATGA	2 cut(s)	586, 2536
BspLI	GGNNCC	1 cut(s)	1518
BspMI	ACCTGC	2 cut(s)	1474, 2491
BspPI	GGATC	7 cut(s)	909, 1227, 1585, 2117, 2126, 2261, 2372
BspQI	GCTCTTC	2 cut(s)	1203, 1499
BspT107I	GGYRCC	1 cut(s)	1516
BsrDI	GCAATG	5 cut(s)	756, 1544, 1839, 2019, 2495
BsrFI	RCCGGY	1 cut(s)	1475
BsrI	ACTGG	2 cut(s)	1417, 2337
BssAI	RCCGGY	1 cut(s)	1475
BssECI	CCNNGG	4 cut(s)	300, 553, 2381, 2486
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	3 cut(s)	300, 553, 2381
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	4 cut(s)	523, 2136, 2241, 2487
Bst6I	CTCTTC	8 cut(s)	175, 1190, 1203, 1499, 1711, 2409, 2414, 2615
BstAPI	GCANNNNNTGC	1 cut(s)	1107
BstBAI	YACGTR	1 cut(s)	2278
BstC8I	GCNNGC	7 cut(s)	346, 645, 949, 1215, 1858, 1894, 2035
BstDEI	CTNAG	5 cut(s)	246, 1537, 2054, 2287, 2307
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	5 cut(s)	784, 811, 888, 2134, 2596
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	350
BstMAI	GTCTC	4 cut(s)	1255, 2078, 2416, 2443
BstMWI	GCNNNNNNNGC	6 cut(s)	1107, 1565, 1893, 2159, 2168, 2628
BstNI	CCWGG	4 cut(s)	523, 2136, 2241, 2487
BstNSI	RCATGY	1 cut(s)	1452
BstSCI	CCNGG	7 cut(s)	291, 521, 1970, 2124, 2134, 2239, 2485
BstSLI	GKGCMC	1 cut(s)	2442
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	4 cut(s)	1555, 1872, 2180, 2618
BstV2I	GAAGAC	1 cut(s)	1828
BstX2I	RGATCY	3 cut(s)	511, 1162, 1590
BstYI	RGATCY	3 cut(s)	511, 1162, 1590
Bsu15I	ATCGAT	2 cut(s)	1323, 2599
BsuI	GTATCC	2 cut(s)	1108, 1411
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	2 cut(s)	1323, 2599
BtgI	CCRYGG	1 cut(s)	553
BtrI	CACGTC	3 cut(s)	1051, 1259, 2573
BtsCI	GGATG	5 cut(s)	784, 811, 888, 2134, 2596
BtsIMutI	CAGTG	2 cut(s)	1147, 2330
BveI	ACCTGC	2 cut(s)	1474, 2491
Cac8I	GCNNGC	7 cut(s)	346, 645, 949, 1215, 1858, 1894, 2035
CciI	TCATGA	2 cut(s)	586, 2536
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	1475
ClaI	ATCGAT	2 cut(s)	1323, 2599
Csp6I	GTAC	6 cut(s)	145, 319, 611, 754, 982, 1660
CspAI	ACCGGT	1 cut(s)	1475
CviQI	GTAC	6 cut(s)	145, 319, 611, 754, 982, 1660
DdeI	CTNAG	5 cut(s)	246, 1537, 2054, 2287, 2307
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	8 cut(s)	175, 1190, 1203, 1499, 1711, 2409, 2414, 2615
EarI	CTCTTC	8 cut(s)	175, 1190, 1203, 1499, 1711, 2409, 2414, 2615
EciI	GGCGGA	1 cut(s)	1232
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	3 cut(s)	300, 553, 2381
Eco24I	GRGCYC	1 cut(s)	40
Eco32I	GATATC	2 cut(s)	848, 2556
Eco53kI	GAGCTC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	285, 722
Eco72I	CACGTG	1 cut(s)	2278
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	38
EcoRI	GAATTC	4 cut(s)	75, 223, 598, 1684
EcoRII	CCWGG	4 cut(s)	521, 2134, 2239, 2485
EcoRV	GATATC	2 cut(s)	848, 2556
EcoT14I	CCWWGG	3 cut(s)	300, 553, 2381
EcoT22I	ATGCAT	1 cut(s)	1753
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	3 cut(s)	300, 553, 2381
Esp3I	CGTCTC	1 cut(s)	2416
FaqI	GGGAC	7 cut(s)	696, 977, 1954, 2090, 2198, 2503, 2583
FauI	CCCGC	4 cut(s)	172, 343, 1361, 2580
FauNDI	CATATG	3 cut(s)	1753, 2039, 2164
FbaI	TGATCA	2 cut(s)	1074, 1200
FblI	GTMKAC	1 cut(s)	1878
Fnu4HI	GCNGC	4 cut(s)	1569, 1861, 2169, 2632
FokI	GGATG	5 cut(s)	791, 818, 895, 2141, 2603
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	4 cut(s)	1569, 1861, 2169, 2632
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	4 cut(s)	1569, 1861, 2169, 2632
GsuI	CTGGAG	1 cut(s)	2354
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	7 cut(s)	126, 200, 292, 1476, 1812, 1972, 2126
HhaI	GCGC	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	2 cut(s)	471, 733
HindII	GTYRAC	2 cut(s)	471, 733
HindIII	AAGCTT	2 cut(s)	131, 570
HpaI	GTTAAC	2 cut(s)	471, 733
HpaII	CCGG	7 cut(s)	126, 200, 292, 1476, 1812, 1972, 2126
HphI	GGTGA	6 cut(s)	12, 1069, 1079, 1784, 2515, 2540
Hpy166II	GTNNAC	7 cut(s)	161, 214, 321, 471, 733, 1879, 2275
Hpy188I	TCNGA	8 cut(s)	115, 188, 236, 418, 702, 1627, 2314, 2352
Hpy8I	GTNNAC	7 cut(s)	161, 214, 321, 471, 733, 1879, 2275
Hpy99I	CGWCG	4 cut(s)	49, 75, 192, 497
HpyAV	CCTTC	6 cut(s)	339, 631, 1763, 1877, 2357, 2525
HpyCH4IV	ACGT	8 cut(s)	323, 1050, 1258, 1705, 2271, 2277, 2425, 2572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1107, 1565, 1893, 2159, 2168, 2628
HpyF3I	CTNAG	5 cut(s)	246, 1537, 2054, 2287, 2307
HpySE526I	ACGT	8 cut(s)	323, 1050, 1258, 1705, 2271, 2277, 2425, 2572
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	2 cut(s)	1074, 1200
KspAI	GTTAAC	2 cut(s)	471, 733
LguI	GCTCTTC	2 cut(s)	1203, 1499
LmnI	GCTCC	2 cut(s)	116, 2308
Lsp1109I	GCAGC	4 cut(s)	1555, 1872, 2180, 2618
LweI	GCATC	7 cut(s)	352, 769, 1227, 2020, 2054, 2162, 2581
MaeII	ACGT	8 cut(s)	323, 1050, 1258, 1705, 2271, 2277, 2425, 2572
MflI	RGATCY	3 cut(s)	511, 1162, 1590
MhlI	GDGCHC	3 cut(s)	40, 481, 2442
MlyI	GAGTC	3 cut(s)	1704, 2203, 2485
MmeI	TCCRAC	2 cut(s)	138, 211
Mph1103I	ATGCAT	1 cut(s)	1753
MroXI	GAANNNNTTC	2 cut(s)	1184, 1394
MseI	TTAA	5 cut(s)	470, 714, 732, 923, 2429
MslI	CAYNNNNRTG	2 cut(s)	156, 1296
MspI	CCGG	7 cut(s)	126, 200, 292, 1476, 1812, 1972, 2126
MspR9I	CCNGG	7 cut(s)	293, 523, 1972, 2126, 2136, 2241, 2487
Mva1269I	GAATGC	2 cut(s)	1112, 1648
MvaI	CCWGG	4 cut(s)	523, 2136, 2241, 2487
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	6 cut(s)	1107, 1565, 1893, 2159, 2168, 2628
NciI	CCSGG	3 cut(s)	293, 1972, 2126
NcoI	CCATGG	1 cut(s)	553
NdeI	CATATG	3 cut(s)	1753, 2039, 2164
NlaIV	GGNNCC	1 cut(s)	1518
NmuCI	GTSAC	7 cut(s)	1067, 1726, 1974, 2328, 2391, 2528, 2542
NsiI	ATGCAT	1 cut(s)	1753
NspI	RCATGY	1 cut(s)	1452
OliI	CACNNNNGTG	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	272
PagI	TCATGA	2 cut(s)	586, 2536
PaqCI	CACCTGC	1 cut(s)	2491
PciSI	GCTCTTC	2 cut(s)	1203, 1499
PcsI	WCGNNNNNNNCGW	2 cut(s)	1130, 2268
PctI	GAATGC	2 cut(s)	1112, 1648
PdmI	GAANNNNTTC	2 cut(s)	1184, 1394
PfoI	TCCNGGA	3 cut(s)	291, 521, 2239
PinAI	ACCGGT	1 cut(s)	1475
PkrI	GCNGC	4 cut(s)	1570, 1862, 2170, 2633
PleI	GAGTC	3 cut(s)	1703, 2202, 2485
PmaCI	CACGTG	1 cut(s)	2278
PmlI	CACGTG	1 cut(s)	2278
PpsI	GAGTC	3 cut(s)	1703, 2202, 2485
Ppu21I	YACGTR	1 cut(s)	2278
Psp124BI	GAGCTC	1 cut(s)	40
Psp1406I	AACGTT	1 cut(s)	2271
Psp6I	CCWGG	4 cut(s)	521, 2134, 2239, 2485
PspCI	CACGTG	1 cut(s)	2278
PspGI	CCWGG	4 cut(s)	521, 2134, 2239, 2485
PspN4I	GGNNCC	1 cut(s)	1518
PspXI	VCTCGAGB	1 cut(s)	272
PsrI	GAACNNNNNNTAC	2 cut(s)	1402, 1434
PsuI	RGATCY	3 cut(s)	511, 1162, 1590
RsaI	GTAC	6 cut(s)	146, 320, 612, 755, 983, 1661
RsaNI	GTAC	6 cut(s)	145, 319, 611, 754, 982, 1660
RseI	CAYNNNNRTG	2 cut(s)	156, 1296
SacI	GAGCTC	1 cut(s)	40
SapI	GCTCTTC	2 cut(s)	1203, 1499
SaqAI	TTAA	5 cut(s)	470, 714, 732, 923, 2429
SatI	GCNGC	4 cut(s)	1569, 1861, 2169, 2632
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	3 cut(s)	1704, 2203, 2485
ScrFI	CCNGG	7 cut(s)	293, 523, 1972, 2126, 2136, 2241, 2487
SduI	GDGCHC	3 cut(s)	40, 481, 2442
SfaNI	GCATC	7 cut(s)	352, 769, 1227, 2020, 2054, 2162, 2581
Sfr274I	CTCGAG	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	156, 1296
SmlI	CTYRAG	4 cut(s)	272, 851, 967, 2173
SmoI	CTYRAG	4 cut(s)	272, 851, 967, 2173
SpeI	ACTAGT	1 cut(s)	742
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	7 cut(s)	291, 521, 1970, 2124, 2134, 2239, 2485
StyI	CCWWGG	3 cut(s)	300, 553, 2381
TaiI	ACGT	8 cut(s)	326, 1053, 1261, 1708, 2274, 2280, 2428, 2575
TatI	WGTACW	5 cut(s)	144, 318, 753, 981, 1659
Tru1I	TTAA	5 cut(s)	470, 714, 732, 923, 2429
Tru9I	TTAA	5 cut(s)	470, 714, 732, 923, 2429
TscAI	CASTG	2 cut(s)	1147, 2337
TseFI	GTSAC	7 cut(s)	1067, 1726, 1974, 2328, 2391, 2528, 2542
TseI	GCWGC	4 cut(s)	1568, 1860, 2168, 2631
Tsp45I	GTSAC	7 cut(s)	1067, 1726, 1974, 2328, 2391, 2528, 2542
TspDTI	ATGAA	9 cut(s)	16, 402, 677, 1193, 1635, 1828, 1922, 2522, 2553
TspGWI	ACGGA	4 cut(s)	709, 791, 865, 932
TspRI	CASTG	2 cut(s)	1147, 2337
XbaI	TCTAGA	3 cut(s)	32, 1691, 2401
XceI	RCATGY	1 cut(s)	1452
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	1878
XmnI	GAANNNNTTC	2 cut(s)	1184, 1394
ZrmI	AGTACT	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	1753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.