Rmu_sc0017585.1_g000006

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017585.1
OG0012289
Physical Location & Seq
Forward (+)
25220 .. 27526
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017585.1_g000006.1.cds

Sequence Viewer

Length: 2307 bp
atgagaactgcgaacgtaagcagcttctatggtcttagcaaacaagttgtctattcaatgttctcaaaatctctgtcttccagtaaaactagaagagaagtacacaaactcaactcactgatcatcactttaggattacaccaatctgtgttgttctctggcaaactcataagcaagtatgcccaactcagggaccccatttcatccctcgcagttttccaccaagtttggcccaaacacaatccctatctatggaactcaatcatcagagcacttatccataatgggcttcactcaaaagcactcgaccattacaatgaaatgcatggaatgaatgttcagcctgataggtttacctttccttcagtgatcaatgcctgtgctgggttgtgtgatctggaaatgggtatggttgtgcatcaccgtattctggagaagggtttcggctcagacttgtatatatgtaatgcattgatagatatgtacgctagatttggtgaacttggtaatgcacgccatgtgttcgatgaaatgcctgaaagagatattgtgtcgtggaatagtctgatttcagggtacggttcaaatggatattgggaggaagctttggaaatgtttcgtagattaagaattgatgtgttattaccggattgtttttcgatatctagtgttctgcctgcgtgtggaggcttggttgatgttaaggagggtcggttagttcatgctatggttgaaaagattggagtgcatgcagatgttttagtaagtaatgggcttctctcaatgtacttcaaatttggttggtctgaagatgctcaaattttttttgatgagatggtagttagggactctgttagttggaacactgtaatttgtgggtactcgcagttggggttatttgaagaggcaatcaatttgttcagggaaatgataaaggaattcacacctgatttgctaacaatcacatccgtgctccgtgcttgttcacatttacaagacttggaacttgcaaaatatgttcatggctacatgaaaagaagtggttttgaatttgatacaatggcgaacaatgtacttattgatacgtatgcaaaatgtggaagtctattagcttcacgggaagtatttgactacatggaatgcagagattctgtgtcatggaattctatgatcaatggttactttcttaatggttgttttgatgaagggttaaatcattttaagatgatgcggagtaatatgaaacctgattctgtgagttgtgtgacgattctgtctgtctatactcaactcagacatgtggaccaggggaaaatgatccactgtgatatagtgaagctgggatttgattcagatgttattgtcaacaatgttcttgtcgatttgtatgctaaatgtggcaaaatacaagatgcactaaaagtatttgacagcatgacagcacgtgatgttgtaacatggaatagcataatttctgcatgcacccataatgaagactgtagtttaggttttagaatgattcttagaatgagaaatgagggagtgatgcctgacgcagcaacaatgttaggcatcttaccagcgtgttccttacttgctgccaggcaaaaaggacaagagatccatggctgcattttcaggttaggatttcattcagatgttccagttgggaatgcactaatcgaaatgtactctagttgtggtagcttggaaagctccatacgaatatttgagcaaatgtacataaaggatgtggtgacatggacttcgttgatctctgcatatgggacatatggtgaaggtgagaatgcattgagagcatttgaagaaatggaagcaactggtgttcttcctgatcatctagcttttctagccgtcatatatgcttgtagccattcaggtttggtagaagacggtctggcttactttgaccgaatgaagaaacactacaaagttgagcctaggatggagcactatgcttgtgtagttgaccttctatcccgctctgggctattagctcaagctgaggactttatccatacaatgccgatgaaggctgatgcaagtatatggggatctttacttagtgcttgccgagaaaatggagaagaaaagatagctgcacatgtctcagagcagattgttcaattgaattcttatgacacggggtatcatgttttggtgtcgaatgtatatgcagctttagggaagtgggataaagtgagaatgatgaggaaacacatgaaagctaaaggactcacaaaagatcctggatttagctggatggagattcaaaagaagggctga

Protein Analysis

768

Amino Acids

86.51

Weight (kDa)

6.14

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03580
fragaria_vesca FvH4_7g07570
malus_domestica MD02G1235200.v1.1 MD02G1235800.v1.1
prunus_persica Prupe.2G102800_v2.0.a1 Prupe.2G102800_v2.0.a1
pyrus_communis pycom02g20250
rosa_chinensis RchiOBHm_Chr1g0339001 RchiOBHm_Chr1g0343101
rosa_laevigata RLG00000029204 RLG00000029208
rosa_multiflora Rmu_sc0017585.1_g000006
rosa_roxburghii Rroxscaffold_4G00313330
rosa_rugosa Rorug01G0144200.1
rosa_samantha Rh1AG160800 Rh1BG127800 Rh1CG150300 Rh1DG164000
rosa_wichuraiana Rw1G013420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1273
AccBSI CCGCTC 1 cut(s) 2004
AciI CCGC 2 cut(s) 1231, 2002
AclWI GGATC 4 cut(s) 1312, 1615, 2083, 2261
AcsI RAATTY 6 cut(s) 794, 819, 938, 1049, 1162, 2152
AcuI CTGAAG 2 cut(s) 348, 828
AcvI CACGTG 1 cut(s) 1445
AfaI GTAC 8 cut(s) 102, 485, 578, 788, 881, 1074, 1691, 1742
AfiI CCNNNNNNNGG 7 cut(s) 189, 190, 252, 384, 430, 683, 2007
AflIII ACRYGT 2 cut(s) 1297, 2125
AjnI CCWGG 3 cut(s) 1305, 1601, 2269
AleI CACNNNNGTG 1 cut(s) 968
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
Alw21I GWGCWC 3 cut(s) 274, 975, 1974
Alw26I GTCTC 1 cut(s) 2134
AlwI GGATC 4 cut(s) 1312, 1615, 2083, 2261
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 6 cut(s) 21, 1556, 1598, 1629, 2120, 2198
ApoI RAATTY 6 cut(s) 794, 819, 938, 1049, 1162, 2152
ArsI GACNNNNNNTTYG 6 cut(s) 33, 59, 65, 91, 1750, 1782
Asp700I GAANNNNTTC 2 cut(s) 440, 615
AspA2I CCTAGG 1 cut(s) 1961
AspS9I GGNCC 3 cut(s) 193, 231, 1303
AsuHPI GGTGA 5 cut(s) 413, 509, 1768, 1808, 1814
AvaII GGWCC 2 cut(s) 193, 1303
AvrII CCTAGG 1 cut(s) 1961
BarI GAAGNNNNNNTAC 4 cut(s) 1931, 1963, 1977, 2009
BbrPI CACGTG 1 cut(s) 1445
BbsI GAAGAC 3 cut(s) 69, 1500, 1917
Bbv12I GWGCWC 3 cut(s) 274, 975, 1974
BbvCI CCTCAGC 1 cut(s) 2025
BbvI GCAGC 6 cut(s) 33, 1568, 1585, 1616, 2107, 2210
BccI CCATC 3 cut(s) 829, 1960, 2278
BceAI ACGGC 1 cut(s) 1859
BcgI CGANNNNNNTGC 2 cut(s) 1370, 1404
BciT130I CCWGG 3 cut(s) 1307, 1603, 2271
BclI TGATCA 4 cut(s) 120, 369, 1170, 1855
BcoDI GTCTC 1 cut(s) 2134
BfaI CTAG 7 cut(s) 90, 489, 666, 1695, 1862, 1871, 1962
BfmI CTRYAG 1 cut(s) 1498
BisI GCNGC 6 cut(s) 22, 1557, 1599, 1630, 2121, 2199
BlnI CCTAGG 1 cut(s) 1961
BlsI GCNGC 6 cut(s) 23, 1558, 1600, 1631, 2122, 2200
Bme1390I CCNGG 3 cut(s) 1307, 1603, 2271
Bme18I GGWCC 2 cut(s) 193, 1303
BmgT120I GGNCC 3 cut(s) 193, 231, 1303
BmiI GGNNCC 2 cut(s) 194, 195
BmrFI CCNGG 3 cut(s) 1307, 1603, 2271
BmsI GCATC 7 cut(s) 427, 802, 1218, 1402, 1536, 1581, 2050
BpiI GAAGAC 3 cut(s) 69, 1500, 1917
BpmI CTGGAG 1 cut(s) 452
Bpu10I CCTNAGC 1 cut(s) 2025
BpuEI CTTGAG 1 cut(s) 2004
BsaAI YACGTR 2 cut(s) 1086, 1445
BsaJI CCNNGG 3 cut(s) 1306, 1624, 1961
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 4 cut(s) 678, 698, 708, 728
Bsc4I CCNNNNNNNGG 7 cut(s) 189, 190, 252, 384, 430, 683, 2007
Bse1I ACTGG 3 cut(s) 81, 1664, 1846
BseBI CCWGG 3 cut(s) 1307, 1603, 2271
BseDI CCNNGG 3 cut(s) 1306, 1624, 1961
BseGI GGATG 5 cut(s) 203, 965, 1756, 1971, 2289
BseLI CCNNNNNNNGG 7 cut(s) 189, 190, 252, 384, 430, 683, 2007
BseMII CTCAG 5 cut(s) 202, 462, 1306, 2016, 2145
BseNI ACTGG 3 cut(s) 81, 1664, 1846
BseXI GCAGC 6 cut(s) 33, 1568, 1585, 1616, 2107, 2210
BseYI CCCAGC 2 cut(s) 383, 1339
BsgI GTGCAG 1 cut(s) 2106
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 3 cut(s) 274, 975, 1974
BsiSI CCGG 1 cut(s) 647
BslFI GGGAC 3 cut(s) 206, 860, 1801
BslI CCNNNNNNNGG 7 cut(s) 189, 190, 252, 384, 430, 683, 2007
BsmAI GTCTC 1 cut(s) 2134
BsmFI GGGAC 3 cut(s) 206, 860, 1801
BsmI GAATGC 3 cut(s) 1145, 1678, 1813
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 274, 975, 1974
Bsp1407I TGTACA 1 cut(s) 1740
Bsp19I CCATGG 1 cut(s) 1624
BspACI CCGC 2 cut(s) 1231, 2002
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 5 cut(s) 201, 461, 1305, 2017, 2144
BspLI GGNNCC 2 cut(s) 194, 195
BspPI GGATC 4 cut(s) 1312, 1615, 2083, 2261
BsrBI CCGCTC 1 cut(s) 2004
BsrGI TGTACA 1 cut(s) 1740
BsrI ACTGG 3 cut(s) 81, 1664, 1846
BssECI CCNNGG 3 cut(s) 1306, 1624, 1961
BssT1I CCWWGG 2 cut(s) 1624, 1961
Bst2UI CCWGG 3 cut(s) 1307, 1603, 2271
Bst4CI ACNGT 6 cut(s) 425, 581, 868, 1325, 1499, 1916
Bst6I CTCTTC 2 cut(s) 88, 897
BstAUI TGTACA 1 cut(s) 1740
BstBAI YACGTR 2 cut(s) 1086, 1445
BstC8I GCNNGC 5 cut(s) 514, 678, 750, 1480, 2092
BstDEI CTNAG 8 cut(s) 35, 188, 448, 1292, 1523, 2025, 2084, 2131
BstDSI CCRYGG 1 cut(s) 1624
BstF5I GGATG 5 cut(s) 203, 965, 1756, 1971, 2289
BstMAI GTCTC 1 cut(s) 2134
BstMWI GCNNNNNNNGC 3 cut(s) 1713, 1817, 1871
BstNI CCWGG 3 cut(s) 1307, 1603, 2271
BstNSI RCATGY 4 cut(s) 752, 1301, 1482, 2129
BstSCI CCNGG 3 cut(s) 1305, 1601, 2269
BstSFI CTRYAG 1 cut(s) 1498
BstSNI TACGTA 1 cut(s) 1086
BstV1I GCAGC 6 cut(s) 33, 1568, 1585, 1616, 2107, 2210
BstV2I GAAGAC 3 cut(s) 69, 1500, 1917
BstX2I RGATCY 3 cut(s) 1620, 2075, 2266
BstYI RGATCY 3 cut(s) 1620, 2075, 2266
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 1624
BtsCI GGATG 5 cut(s) 203, 965, 1756, 1971, 2289
BtsIMutI CAGTG 4 cut(s) 116, 372, 864, 1321
Cac8I GCNNGC 5 cut(s) 514, 678, 750, 1480, 2092
Cfr13I GGNCC 3 cut(s) 193, 231, 1303
CseI GACGC 1 cut(s) 1562
Csp6I GTAC 8 cut(s) 101, 484, 577, 787, 880, 1073, 1690, 1741
CspCI CAANNNNNGTGG 2 cut(s) 209, 244
CviQI GTAC 8 cut(s) 101, 484, 577, 787, 880, 1073, 1690, 1741
DdeI CTNAG 8 cut(s) 35, 188, 448, 1292, 1523, 2025, 2084, 2131
DrdI GACNNNNNNGTC 1 cut(s) 1273
DseDI GACNNNNNNGTC 1 cut(s) 1273
Eam1104I CTCTTC 2 cut(s) 88, 897
EarI CTCTTC 2 cut(s) 88, 897
Eco105I TACGTA 1 cut(s) 1086
Eco130I CCWWGG 2 cut(s) 1624, 1961
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 193, 1303
Eco57I CTGAAG 2 cut(s) 348, 828
Eco72I CACGTG 1 cut(s) 1445
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 3 cut(s) 938, 1162, 2152
EcoRII CCWGG 3 cut(s) 1305, 1601, 2269
EcoRV GATATC 1 cut(s) 663
EcoT14I CCWWGG 2 cut(s) 1624, 1961
EcoT22I ATGCAT 3 cut(s) 327, 472, 1813
ErhI CCWWGG 2 cut(s) 1624, 1961
FaqI GGGAC 3 cut(s) 206, 860, 1801
FauI CCCGC 1 cut(s) 2009
FauNDI CATATG 2 cut(s) 1783, 1792
FbaI TGATCA 4 cut(s) 120, 369, 1170, 1855
Fnu4HI GCNGC 6 cut(s) 22, 1557, 1599, 1630, 2121, 2199
FokI GGATG 5 cut(s) 190, 952, 1763, 1978, 2296
Fsp4HI GCNGC 6 cut(s) 22, 1557, 1599, 1630, 2121, 2199
FspBI CTAG 7 cut(s) 90, 489, 666, 1695, 1862, 1871, 1962
GluI GCNGC 6 cut(s) 22, 1557, 1599, 1630, 2121, 2199
GsaI CCCAGC 2 cut(s) 387, 1343
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 647
HgaI GACGC 1 cut(s) 1562
HincII GTYRAC 2 cut(s) 1366, 1990
HindII GTYRAC 2 cut(s) 1366, 1990
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 8 cut(s) 848, 1148, 1250, 1270, 1349, 1519, 2256, 2290
HpaII CCGG 1 cut(s) 647
HphI GGTGA 5 cut(s) 413, 509, 1768, 1808, 1814
Hpy166II GTNNAC 7 cut(s) 103, 354, 500, 986, 1303, 1366, 1990
Hpy188I TCNGA 8 cut(s) 269, 451, 567, 808, 1295, 1354, 1657, 2134
Hpy188III TCNNGA 3 cut(s) 398, 431, 1853
Hpy8I GTNNAC 7 cut(s) 103, 354, 500, 986, 1303, 1366, 1990
HpyAV CCTTC 7 cut(s) 372, 430, 1199, 1793, 2003, 2047, 2293
HpyCH4III ACNGT 6 cut(s) 425, 581, 868, 1325, 1499, 1916
HpyCH4IV ACGT 3 cut(s) 15, 1085, 1444
HpyF10VI GCNNNNNNNGC 3 cut(s) 1713, 1817, 1871
HpyF3I CTNAG 8 cut(s) 35, 188, 448, 1292, 1523, 2025, 2084, 2131
HpySE526I ACGT 3 cut(s) 15, 1085, 1444
KflI GGGWCCC 1 cut(s) 193
Ksp22I TGATCA 4 cut(s) 120, 369, 1170, 1855
LmnI GCTCC 3 cut(s) 978, 1721, 1969
Lsp1109I GCAGC 6 cut(s) 33, 1568, 1585, 1616, 2107, 2210
LweI GCATC 7 cut(s) 427, 802, 1218, 1402, 1536, 1581, 2050
MaeI CTAG 7 cut(s) 90, 489, 666, 1695, 1862, 1871, 1962
MaeII ACGT 3 cut(s) 15, 1085, 1444
MaeIII GTNAC 4 cut(s) 1178, 1264, 1453, 1756
MbiI CCGCTC 1 cut(s) 2004
MfeI CAATTG 1 cut(s) 2147
MflI RGATCY 3 cut(s) 1620, 2075, 2266
MhlI GDGCHC 3 cut(s) 274, 975, 1974
MlyI GAGTC 2 cut(s) 842, 2250
MmeI TCCRAC 1 cut(s) 839
MnlI CCTC 8 cut(s) 218, 592, 680, 700, 898, 1531, 2020, 2226
Mph1103I ATGCAT 3 cut(s) 327, 472, 1813
MroXI GAANNNNTTC 2 cut(s) 440, 615
MseI TTAA 5 cut(s) 626, 702, 1188, 1211, 1221
MslI CAYNNNNRTG 4 cut(s) 315, 753, 968, 1656
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 3 cut(s) 1307, 1603, 2271
MunI CAATTG 1 cut(s) 2147
Mva1269I GAATGC 3 cut(s) 1145, 1678, 1813
MvaI CCWGG 3 cut(s) 1307, 1603, 2271
MwoI GCNNNNNNNGC 3 cut(s) 1713, 1817, 1871
NcoI CCATGG 1 cut(s) 1624
NdeI CATATG 2 cut(s) 1783, 1792
NlaIV GGNNCC 2 cut(s) 194, 195
NmeAIII GCCGAG 1 cut(s) 2120
NmuCI GTSAC 2 cut(s) 1264, 1756
NsiI ATGCAT 3 cut(s) 327, 472, 1813
NspI RCATGY 4 cut(s) 752, 1301, 1482, 2129
OliI CACNNNNGTG 1 cut(s) 968
PaeI GCATGC 2 cut(s) 752, 1482
PciI ACATGT 2 cut(s) 1297, 2125
PctI GAATGC 3 cut(s) 1145, 1678, 1813
PdmI GAANNNNTTC 2 cut(s) 440, 615
PfeI GAWTC 6 cut(s) 1148, 1250, 1270, 1349, 1519, 2290
PfoI TCCNGGA 1 cut(s) 2269
PkrI GCNGC 6 cut(s) 23, 1558, 1600, 1631, 2122, 2200
PleI GAGTC 2 cut(s) 842, 2250
PmaCI CACGTG 1 cut(s) 1445
PmlI CACGTG 1 cut(s) 1445
PpsI GAGTC 2 cut(s) 842, 2250
Ppu21I YACGTR 2 cut(s) 1086, 1445
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 2 cut(s) 1297, 2125
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 3 cut(s) 1305, 1601, 2269
PspCI CACGTG 1 cut(s) 1445
PspFI CCCAGC 2 cut(s) 383, 1339
PspGI CCWGG 3 cut(s) 1305, 1601, 2269
PspN4I GGNNCC 2 cut(s) 194, 195
PspPI GGNCC 3 cut(s) 193, 231, 1303
PspPPI RGGWCCY 1 cut(s) 193
PsuI RGATCY 3 cut(s) 1620, 2075, 2266
RsaI GTAC 8 cut(s) 102, 485, 578, 788, 881, 1074, 1691, 1742
RsaNI GTAC 8 cut(s) 101, 484, 577, 787, 880, 1073, 1690, 1741
RseI CAYNNNNRTG 4 cut(s) 315, 753, 968, 1656
SaqAI TTAA 5 cut(s) 626, 702, 1188, 1211, 1221
SatI GCNGC 6 cut(s) 22, 1557, 1599, 1630, 2121, 2199
Sau96I GGNCC 3 cut(s) 193, 231, 1303
SchI GAGTC 2 cut(s) 842, 2250
ScrFI CCNGG 3 cut(s) 1307, 1603, 2271
SduI GDGCHC 3 cut(s) 274, 975, 1974
SfaNI GCATC 7 cut(s) 427, 802, 1218, 1402, 1536, 1581, 2050
SfcI CTRYAG 1 cut(s) 1498
SinI GGWCC 2 cut(s) 193, 1303
SmiMI CAYNNNNRTG 4 cut(s) 315, 753, 968, 1656
SmlI CTYRAG 1 cut(s) 2019
SmoI CTYRAG 1 cut(s) 2019
SnaBI TACGTA 1 cut(s) 1086
SphI GCATGC 2 cut(s) 752, 1482
SsiI CCGC 2 cut(s) 1231, 2002
SspI AATATT 1 cut(s) 1728
SspMI CTAG 7 cut(s) 90, 489, 666, 1695, 1862, 1871, 1962
StyD4I CCNGG 3 cut(s) 1305, 1601, 2269
StyI CCWWGG 2 cut(s) 1624, 1961
TaaI ACNGT 6 cut(s) 425, 581, 868, 1325, 1499, 1916
TaiI ACGT 3 cut(s) 18, 1088, 1447
TaqI TCGA 6 cut(s) 306, 525, 659, 1380, 1683, 2186
TaqII GACCGA 1 cut(s) 1947
TatI WGTACW 5 cut(s) 100, 786, 1072, 1689, 1740
TfiI GAWTC 6 cut(s) 1148, 1250, 1270, 1349, 1519, 2290
Tru1I TTAA 5 cut(s) 626, 702, 1188, 1211, 1221
Tru9I TTAA 5 cut(s) 626, 702, 1188, 1211, 1221
TscAI CASTG 4 cut(s) 123, 372, 871, 1328
TseFI GTSAC 2 cut(s) 1264, 1756
TseI GCWGC 6 cut(s) 21, 1556, 1598, 1629, 2120, 2198
Tsp45I GTSAC 2 cut(s) 1264, 1756
TspGWI ACGGA 2 cut(s) 958, 965
TspRI CASTG 4 cut(s) 123, 372, 871, 1328
VpaK11BI GGWCC 2 cut(s) 193, 1303
XapI RAATTY 6 cut(s) 794, 819, 938, 1049, 1162, 2152
XceI RCATGY 4 cut(s) 752, 1301, 1482, 2129
XmaJI CCTAGG 1 cut(s) 1961
XmnI GAANNNNTTC 2 cut(s) 440, 615
XspI CTAG 7 cut(s) 90, 489, 666, 1695, 1862, 1871, 1962
Zsp2I ATGCAT 3 cut(s) 327, 472, 1813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.