Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012289

Physical Location & Seq

Genomic Coordinates Reverse (-)

33099911 .. 33102093

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG150300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTTTCGTAGATTAAGAATTGATGGGTTGTTACCGGATTGTTTTTCGATATCTAGTGTTCTGCCTGCGTGTGGAGGCTTGGTTGATGTTAAAGAGGGTCAGTTAGTTCATGCTATGGTTGAAAAGATTGGAGTGCATGCAGATGTTTTAGTAAGTAATGGGCTTCTCTCAATGTACTTCAAATTTGGTTGGTCTAAAGATGCTCAAATTCTTTTTGATGAGATGGTAGTTAGGGACTCTGTTAGTTGGAACACTGTGATTTGTGGGTACTCGCAGTTGGGATTATTTGAAGAGGCAATCAATTTGTTCAGGGTAATGATAAAGGAATTCACACCTGATTTGCTAACAATCACATCCGTGCTCCGTGCTTGTTCACATTTACAAGACTTGGAACTTGCAAAATATGTTCATGGCTACATGAAAAGAAGTGGTTTTGAATTTGATACAATGGCGAACAATGTACTTATTGATACGTATGCAAAATGTGGAAGTCTATTAGCTTCGCGGGAAGTATTTGACTACATGGAATGCAGAGATTCTGTGTCATGGAATTCTATGATCAATGGTTACTTTCTTAATGGTTGTTTTGATGAAGGGTTAAATCTTTTTAAGATGATGCGGAGTAATATGAAACCTGATTCTGTGAGTTGTGTGACGATTCTGTCTGTCTATACTCAACTCAGACATGTGGACCAGGGGAAAATGATCCACTGTGATATAGTGAAGCTGGGATTTGATTCAGATGTTATTGTCAACAATGTTCTTGTCGATTTGTATGCTAAATGTGGCAAAATACAAGATGCACTAAGAGTATTTGACAGCATGACAGCACGTGATGTTGTAACATGGAATAGCATAATTTCTGCATGCACCCATAATGAAGACTGTAGTTTAGGTTTTAGAATGATTCTTAGAATGAGAAATGAGGGAGTGATGCCTGACGCAGCAACAATGTTAGGCATCTTACCAGCGTGTTCCTTACTTGCTGCCAAGCAAAAAGGACAAGAGATCCATGGCTGCATTTTCAGGTTAGGATTTCATTCAGATGTTCCGGTTGGGAATGCACTAATCGAAATGTACTCTAGTTGTGGTAGCTTGGAAAGCTCCATACGAATATTTGAGCAAATGTACATAAAGGATGTGGTGACATGGACTTCGTTGATCTCTGCATATGGGACATATGGTGAAGGTCCAATGTTTCAAGGAGATTTACCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

406

Amino Acids

45.39

Weight (kDa)

5.24

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	79 - 125	4.9e-09	PPR repeat family
PPR	PF01535	81 - 108	1.8e-07	PPR repeat
PPR_2	PF13041	179 - 222	1.3e-07	PPR repeat family
PPR	PF01535	181 - 208	6.2e-08	PPR repeat
PPR_2	PF13041	278 - 323	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03580
fragaria_vesca	FvH4_7g07570
malus_domestica	MD02G1235200.v1.1 MD02G1235800.v1.1
prunus_persica	Prupe.2G102800_v2.0.a1 Prupe.2G102800_v2.0.a1
pyrus_communis	pycom02g20250
rosa_chinensis	RchiOBHm_Chr1g0339001 RchiOBHm_Chr1g0343101
rosa_laevigata	RLG00000029204 RLG00000029208
rosa_multiflora	Rmu_sc0017585.1_g000006
rosa_roxburghii	Rroxscaffold_4G00313330
rosa_rugosa	Rorug01G0144200.1
rosa_samantha	Rh1AG160800 Rh1BG127800 Rh1CG150300 Rh1DG164000
rosa_wichuraiana	Rw1G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	661
AccII	CGCG	1 cut(s)	505
AciI	CCGC	2 cut(s)	505, 619
AclWI	GGATC	2 cut(s)	700, 1003
AcsI	RAATTY	5 cut(s)	182, 207, 326, 437, 550
AcvI	CACGTG	1 cut(s)	833
AfaI	GTAC	5 cut(s)	176, 269, 462, 1079, 1130
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	5 cut(s)	122, 181, 290, 437, 1202
AjnI	CCWGG	1 cut(s)	693
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	4 cut(s)	500, 727, 1095, 1104
AluI	AGCT	4 cut(s)	500, 727, 1095, 1104
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	700, 1003
ApeKI	GCWGC	3 cut(s)	944, 986, 1017
ApoI	RAATTY	5 cut(s)	182, 207, 326, 437, 550
ArsI	GACNNNNNNTTYG	2 cut(s)	1138, 1170
AspS9I	GGNCC	2 cut(s)	691, 1190
AsuHPI	GGTGA	2 cut(s)	1156, 1196
AvaII	GGWCC	2 cut(s)	691, 1190
BbrPI	CACGTG	1 cut(s)	833
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	956, 973, 1004
BccI	CCATC	2 cut(s)	17, 217
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	1 cut(s)	558
BfaI	CTAG	2 cut(s)	54, 1083
BfmI	CTRYAG	1 cut(s)	886
BisI	GCNGC	3 cut(s)	945, 987, 1018
BlsI	GCNGC	3 cut(s)	946, 988, 1019
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	2 cut(s)	691, 1190
BmgT120I	GGNCC	2 cut(s)	691, 1190
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	5 cut(s)	190, 606, 790, 924, 969
BpiI	GAAGAC	1 cut(s)	888
BsaAI	YACGTR	2 cut(s)	474, 833
BsaJI	CCNNGG	2 cut(s)	694, 1012
BsaWI	WCCGGW	2 cut(s)	34, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	2 cut(s)	694, 1012
BseGI	GGATG	2 cut(s)	353, 1144
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	694
BseXI	GCAGC	3 cut(s)	956, 973, 1004
BseYI	CCCAGC	1 cut(s)	727
Bsh1236I	CGCG	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	35, 1052
BslFI	GGGAC	2 cut(s)	248, 1189
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	248, 1189
BsmI	GAATGC	2 cut(s)	533, 1066
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	1128
Bsp143I	GATC	4 cut(s)	558, 705, 1008, 1161
Bsp19I	CCATGG	1 cut(s)	1012
BspACI	CCGC	2 cut(s)	505, 619
BspCNI	CTCAG	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	505
BspPI	GGATC	2 cut(s)	700, 1003
BsrGI	TGTACA	1 cut(s)	1128
BssECI	CCNNGG	2 cut(s)	694, 1012
BssMI	GATC	4 cut(s)	558, 705, 1008, 1161
BssT1I	CCWWGG	1 cut(s)	1012
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	256, 713, 887
Bst6I	CTCTTC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	1128
BstBAI	YACGTR	2 cut(s)	474, 833
BstC8I	GCNNGC	3 cut(s)	66, 138, 868
BstDEI	CTNAG	3 cut(s)	680, 806, 911
BstDSI	CCRYGG	1 cut(s)	1012
BstF5I	GGATG	2 cut(s)	353, 1144
BstFNI	CGCG	1 cut(s)	505
BstKTI	GATC	4 cut(s)	561, 708, 1011, 1164
BstMBI	GATC	4 cut(s)	558, 705, 1008, 1161
BstMWI	GCNNNNNNNGC	1 cut(s)	1101
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	3 cut(s)	140, 689, 870
BstSCI	CCNGG	1 cut(s)	693
BstSFI	CTRYAG	1 cut(s)	886
BstSNI	TACGTA	1 cut(s)	474
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	956, 973, 1004
BstV2I	GAAGAC	1 cut(s)	888
BstX2I	RGATCY	1 cut(s)	1008
BstYI	RGATCY	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	1012
BtsCI	GGATG	2 cut(s)	353, 1144
BtsIMutI	CAGTG	2 cut(s)	252, 709
Cac8I	GCNNGC	3 cut(s)	66, 138, 868
Cfr13I	GGNCC	2 cut(s)	691, 1190
CseI	GACGC	1 cut(s)	950
Csp6I	GTAC	5 cut(s)	175, 268, 461, 1078, 1129
CviJI	RGCY	8 cut(s)	78, 163, 414, 500, 727, 1017, 1095, 1104
CviKI_1	RGCY	8 cut(s)	78, 163, 414, 500, 727, 1017, 1095, 1104
CviQI	GTAC	5 cut(s)	175, 268, 461, 1078, 1129
DdeI	CTNAG	3 cut(s)	680, 806, 911
DpnI	GATC	4 cut(s)	560, 707, 1010, 1163
DpnII	GATC	4 cut(s)	558, 705, 1008, 1161
DrdI	GACNNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco105I	TACGTA	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	1012
Eco32I	GATATC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	691, 1190
Eco72I	CACGTG	1 cut(s)	833
EcoRI	GAATTC	2 cut(s)	326, 550
EcoRII	CCWGG	1 cut(s)	693
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	1012
ErhI	CCWWGG	1 cut(s)	1012
FaqI	GGGAC	2 cut(s)	248, 1189
FauI	CCCGC	1 cut(s)	498
FauNDI	CATATG	2 cut(s)	1171, 1180
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	945, 987, 1018
FokI	GGATG	2 cut(s)	340, 1151
Fsp4HI	GCNGC	3 cut(s)	945, 987, 1018
FspBI	CTAG	2 cut(s)	54, 1083
GluI	GCNGC	3 cut(s)	945, 987, 1018
GsaI	CCCAGC	1 cut(s)	731
HapII	CCGG	2 cut(s)	35, 1052
HgaI	GACGC	1 cut(s)	950
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	6 cut(s)	236, 536, 638, 658, 737, 907
HpaII	CCGG	2 cut(s)	35, 1052
HphI	GGTGA	2 cut(s)	1156, 1196
Hpy166II	GTNNAC	3 cut(s)	374, 691, 754
Hpy188I	TCNGA	3 cut(s)	683, 742, 1045
Hpy8I	GTNNAC	3 cut(s)	374, 691, 754
HpyAV	CCTTC	2 cut(s)	587, 1181
HpyCH4III	ACNGT	3 cut(s)	256, 713, 887
HpyCH4IV	ACGT	2 cut(s)	473, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1101
HpyF3I	CTNAG	3 cut(s)	680, 806, 911
HpySE526I	ACGT	2 cut(s)	473, 832
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	4 cut(s)	558, 705, 1008, 1161
LmnI	GCTCC	2 cut(s)	366, 1109
Lsp1109I	GCAGC	3 cut(s)	956, 973, 1004
LweI	GCATC	5 cut(s)	190, 606, 790, 924, 969
MaeI	CTAG	2 cut(s)	54, 1083
MaeII	ACGT	2 cut(s)	473, 832
MaeIII	GTNAC	5 cut(s)	30, 566, 652, 841, 1144
MalI	GATC	4 cut(s)	560, 707, 1010, 1163
MboI	GATC	4 cut(s)	558, 705, 1008, 1161
MboII	GAAGA	2 cut(s)	302, 893
MflI	RGATCY	1 cut(s)	1008
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	8 cut(s)	18, 182, 207, 301, 326, 437, 550, 858
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	4 cut(s)	68, 88, 286, 919
MseI	TTAA	5 cut(s)	14, 90, 576, 599, 609
MslI	CAYNNNNRTG	3 cut(s)	141, 356, 1044
MspI	CCGG	2 cut(s)	35, 1052
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	2 cut(s)	533, 1066
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	1101
NcoI	CCATGG	1 cut(s)	1012
NdeI	CATATG	2 cut(s)	1171, 1180
NdeII	GATC	4 cut(s)	558, 705, 1008, 1161
NmuCI	GTSAC	2 cut(s)	652, 1144
NspI	RCATGY	3 cut(s)	140, 689, 870
OliI	CACNNNNGTG	1 cut(s)	356
PaeI	GCATGC	2 cut(s)	140, 870
PciI	ACATGT	1 cut(s)	685
PctI	GAATGC	2 cut(s)	533, 1066
PfeI	GAWTC	5 cut(s)	536, 638, 658, 737, 907
PkrI	GCNGC	3 cut(s)	946, 988, 1019
PleI	GAGTC	1 cut(s)	230
PmaCI	CACGTG	1 cut(s)	833
PmlI	CACGTG	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	2 cut(s)	474, 833
PscI	ACATGT	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	693
PspCI	CACGTG	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	693
PspPI	GGNCC	2 cut(s)	691, 1190
PsuI	RGATCY	1 cut(s)	1008
RsaI	GTAC	5 cut(s)	176, 269, 462, 1079, 1130
RsaNI	GTAC	5 cut(s)	175, 268, 461, 1078, 1129
RseI	CAYNNNNRTG	3 cut(s)	141, 356, 1044
SaqAI	TTAA	5 cut(s)	14, 90, 576, 599, 609
SatI	GCNGC	3 cut(s)	945, 987, 1018
Sau3AI	GATC	4 cut(s)	558, 705, 1008, 1161
Sau96I	GGNCC	2 cut(s)	691, 1190
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	5 cut(s)	190, 606, 790, 924, 969
SfcI	CTRYAG	1 cut(s)	886
SinI	GGWCC	2 cut(s)	691, 1190
SmiMI	CAYNNNNRTG	3 cut(s)	141, 356, 1044
SnaBI	TACGTA	1 cut(s)	474
SphI	GCATGC	2 cut(s)	140, 870
Sse9I	AATT	8 cut(s)	18, 182, 207, 301, 326, 437, 550, 858
SsiI	CCGC	2 cut(s)	505, 619
SspI	AATATT	1 cut(s)	1116
SspMI	CTAG	2 cut(s)	54, 1083
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	1012
TaaI	ACNGT	3 cut(s)	256, 713, 887
TaiI	ACGT	2 cut(s)	476, 835
TaqI	TCGA	3 cut(s)	47, 768, 1071
TasI	AATT	8 cut(s)	18, 182, 207, 301, 326, 437, 550, 858
TatI	WGTACW	4 cut(s)	174, 460, 1077, 1128
TfiI	GAWTC	5 cut(s)	536, 638, 658, 737, 907
Tru1I	TTAA	5 cut(s)	14, 90, 576, 599, 609
Tru9I	TTAA	5 cut(s)	14, 90, 576, 599, 609
TscAI	CASTG	2 cut(s)	259, 716
TseFI	GTSAC	2 cut(s)	652, 1144
TseI	GCWGC	3 cut(s)	944, 986, 1017
Tsp45I	GTSAC	2 cut(s)	652, 1144
TspDTI	ATGAA	7 cut(s)	98, 398, 434, 606, 644, 894, 1028
TspGWI	ACGGA	2 cut(s)	346, 353
TspRI	CASTG	2 cut(s)	259, 716
VpaK11BI	GGWCC	2 cut(s)	691, 1190
XapI	RAATTY	5 cut(s)	182, 207, 326, 437, 550
XceI	RCATGY	3 cut(s)	140, 689, 870
XspI	CTAG	2 cut(s)	54, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.