Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Forward (+)

868741 .. 871837

Gene Structure 3097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCATCTGCGACTCTGAGAAGGCGGCTTCATCACGGTGATGTAGATGGGAGGAAGTATGAACGCTATGATGCAACAGACTCTGAAACTTTAAGTGAACCCTTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGGAGCGTACTCTGGAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTTCACTGGACGTTAATCTTTTCTCAGTTGATTGCACAGTGGGCTCAGTGGATAGCCAAAATAGTCTTTGGATCTGGCTCACTTGTTGGGAGGTTTCTTTCTCTGCCTACATTTGGTCAAATAGGTACTGGTGGGAGGCTTCTGCCACCACCTCTTAGTATGTTGCAGGAAGAAAGGCTGAGAAATATTAAGCGAAGAATAGAAATCCCATTTGATGGATCTCGAATGGAGCATCAAGATGCTCTTAGACAACTATGGAGGCTAGCTTATCCACAGAGAGAACTACCACCTCTTAAATCTGAACTCTGGAAGGAAATGGGTTGGCAAGGAACAGACCCTTCAACAGATTTTCGAGGTGGAGGGTATATATCACTGGAGAATCTAATCTTCTTTGCGAAGACCTATCCGGAATCATTCCAGAGATTGTTACATAAACAAGATGGAACTAGAGCGGAATGGGAATATCCTTTCGCGGTGGCTGGCATCAATATCTCATTCATGCTGGCACAAATGTTAGATCTTCAATCAGGTAAACCATCAACAATAGCCGGGATAAGATTCTTGGGATTTCTGGAAGAAGACGAAATGGCATTCGATAATCTCTACTGTATAGCTTTCCAAATGATGGATGCACAATGGCTTGCTAGACGAGCTTCTTACATGGAATTCAATGACGTCCTGAAATCGACGAGAGCACAATTGGAACGTGAGCTGGCACTGGATGATGTTTCAAGCATCACAGACTTGCCTGCTTTCAATCTTTTGTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

323

Amino Acids

37.43

Weight (kDa)

5.35

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	128 - 293	1.7e-51	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	876
AccB7I	CCANNNNNTGG	2 cut(s)	413, 823
AccBSI	CCGCTC	1 cut(s)	650
AccII	CGCG	1 cut(s)	671
AccIII	TCCGGA	1 cut(s)	604
AciI	CCGC	3 cut(s)	25, 650, 671
AclWI	GGATC	2 cut(s)	277, 424
AcsI	RAATTY	1 cut(s)	863
AcyI	GRCGYC	1 cut(s)	873
AfaI	GTAC	5 cut(s)	121, 143, 157, 325, 965
AfiI	CCNNNNNNNGG	4 cut(s)	107, 311, 413, 823
AgsI	TTSAA	5 cut(s)	540, 722, 868, 930, 955
AluBI	AGCT	4 cut(s)	464, 812, 851, 910
AluI	AGCT	4 cut(s)	464, 812, 851, 910
Alw21I	GWGCWC	1 cut(s)	895
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	277, 424
AlwNI	CAGNNNCTG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	863
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	2 cut(s)	602, 783
Bbv12I	GWGCWC	1 cut(s)	895
BccI	CCATC	5 cut(s)	41, 407, 632, 742, 817
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	3 cut(s)	461, 645, 843
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	748
BmrFI	CCNGG	1 cut(s)	748
BmsI	GCATC	7 cut(s)	14, 61, 427, 439, 690, 817, 942
BmtI	GCTAGC	1 cut(s)	464
BpiI	GAAGAC	2 cut(s)	602, 783
BpmI	CTGGAG	2 cut(s)	182, 593
BpuMI	CCSGG	1 cut(s)	748
BsaHI	GRCGYC	1 cut(s)	873
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 311, 413, 823
Bse1I	ACTGG	4 cut(s)	209, 331, 576, 921
BseAI	TCCGGA	1 cut(s)	604
BseGI	GGATG	2 cut(s)	832, 925
BseLI	CCNNNNNNNGG	4 cut(s)	107, 311, 413, 823
BseMII	CTCAG	4 cut(s)	8, 236, 257, 368
BseNI	ACTGG	4 cut(s)	209, 331, 576, 921
BseRI	GAGGAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	895
BsiSI	CCGG	2 cut(s)	605, 747
BslI	CCNNNNNNNGG	4 cut(s)	107, 311, 413, 823
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	788
Bsp1286I	GDGCHC	2 cut(s)	244, 895
Bsp13I	TCCGGA	1 cut(s)	604
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	3 cut(s)	269, 416, 715
BspACI	CCGC	3 cut(s)	25, 650, 671
BspCNI	CTCAG	4 cut(s)	9, 235, 256, 369
BspEI	TCCGGA	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	671
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	277, 424
BsrBI	CCGCTC	1 cut(s)	650
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	4 cut(s)	209, 331, 576, 921
BssMI	GATC	3 cut(s)	269, 416, 715
BssNI	GRCGYC	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	38, 237, 806
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	873
BstAUI	TGTACA	1 cut(s)	963
BstC8I	GCNNGC	6 cut(s)	462, 679, 702, 840, 912, 948
BstDEI	CTNAG	6 cut(s)	17, 222, 243, 353, 377, 443
BstF5I	GGATG	2 cut(s)	832, 925
BstFNI	CGCG	1 cut(s)	671
BstKTI	GATC	3 cut(s)	272, 419, 718
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	269, 416, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 848
BstSCI	CCNGG	1 cut(s)	746
BstUI	CGCG	1 cut(s)	671
BstV2I	GAAGAC	2 cut(s)	602, 783
BstX2I	RGATCY	3 cut(s)	269, 416, 715
BstYI	RGATCY	3 cut(s)	269, 416, 715
BtsCI	GGATG	2 cut(s)	832, 925
BtsIMutI	CAGTG	5 cut(s)	202, 242, 251, 569, 914
Cac8I	GCNNGC	6 cut(s)	462, 679, 702, 840, 912, 948
CaiI	CAGNNNCTG	1 cut(s)	83
Csp6I	GTAC	5 cut(s)	120, 142, 156, 324, 964
CviAII	CATG	2 cut(s)	697, 859
CviQI	GTAC	5 cut(s)	120, 142, 156, 324, 964
DdeI	CTNAG	6 cut(s)	17, 222, 243, 353, 377, 443
DpnI	GATC	3 cut(s)	271, 418, 717
DpnII	GATC	3 cut(s)	269, 416, 715
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	863
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	2 cut(s)	700, 862
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	2 cut(s)	696, 858
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	2 cut(s)	839, 932
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	3 cut(s)	461, 645, 843
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	2 cut(s)	182, 593
HapII	CCGG	2 cut(s)	605, 747
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	2 cut(s)	700, 862
HinfI	GANTC	5 cut(s)	13, 80, 577, 608, 756
HpaII	CCGG	2 cut(s)	605, 747
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	3 cut(s)	98, 202, 731
Hpy188I	TCNGA	3 cut(s)	18, 85, 499
Hpy188III	TCNNGA	8 cut(s)	161, 420, 434, 505, 605, 616, 770, 877
Hpy8I	GTNNAC	3 cut(s)	98, 202, 731
Hpy99I	CGWCG	1 cut(s)	889
HpyAV	CCTTC	3 cut(s)	15, 502, 546
HpyCH4III	ACNGT	3 cut(s)	38, 237, 806
HpyCH4IV	ACGT	3 cut(s)	209, 873, 904
HpyCH4V	TGCA	4 cut(s)	74, 233, 364, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 848
HpyF3I	CTNAG	6 cut(s)	17, 222, 243, 353, 377, 443
HpySE526I	ACGT	3 cut(s)	209, 873, 904
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	2 cut(s)	700, 862
Kpn2I	TCCGGA	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	269, 416, 715
LmnI	GCTCC	2 cut(s)	151, 427
LweI	GCATC	7 cut(s)	14, 61, 427, 439, 690, 817, 942
MaeI	CTAG	3 cut(s)	461, 645, 843
MaeII	ACGT	3 cut(s)	209, 873, 904
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	3 cut(s)	271, 418, 717
MbiI	CCGCTC	1 cut(s)	650
MboI	GATC	3 cut(s)	269, 416, 715
MfeI	CAATTG	1 cut(s)	896
MflI	RGATCY	3 cut(s)	269, 416, 715
MhlI	GDGCHC	2 cut(s)	244, 895
MluCI	AATT	2 cut(s)	863, 896
MlyI	GAGTC	2 cut(s)	7, 74
MroI	TCCGGA	1 cut(s)	604
MseI	TTAA	4 cut(s)	92, 212, 387, 492
MslI	CAYNNNNRTG	3 cut(s)	36, 39, 435
MspI	CCGG	2 cut(s)	605, 747
MspR9I	CCNGG	1 cut(s)	748
MunI	CAATTG	1 cut(s)	896
Mva1269I	GAATGC	1 cut(s)	788
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	239, 848
NciI	CCSGG	1 cut(s)	748
NdeII	GATC	3 cut(s)	269, 416, 715
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	2 cut(s)	700, 862
PctI	GAATGC	1 cut(s)	788
PfeI	GAWTC	3 cut(s)	577, 608, 756
PflMI	CCANNNNNTGG	2 cut(s)	413, 823
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	2 cut(s)	7, 74
PpsI	GAGTC	2 cut(s)	7, 74
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	3 cut(s)	269, 416, 715
RsaI	GTAC	5 cut(s)	121, 143, 157, 325, 965
RsaNI	GTAC	5 cut(s)	120, 142, 156, 324, 964
RseI	CAYNNNNRTG	3 cut(s)	36, 39, 435
SaqAI	TTAA	4 cut(s)	92, 212, 387, 492
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	3 cut(s)	269, 416, 715
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	2 cut(s)	7, 74
ScrFI	CCNGG	1 cut(s)	748
SduI	GDGCHC	2 cut(s)	244, 895
SfaNI	GCATC	7 cut(s)	14, 61, 427, 439, 690, 817, 942
SmiMI	CAYNNNNRTG	3 cut(s)	36, 39, 435
Sse9I	AATT	2 cut(s)	863, 896
SsiI	CCGC	3 cut(s)	25, 650, 671
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	3 cut(s)	461, 645, 843
StyD4I	CCNGG	1 cut(s)	746
TaaI	ACNGT	3 cut(s)	38, 237, 806
TaiI	ACGT	3 cut(s)	212, 876, 907
TaqI	TCGA	4 cut(s)	421, 550, 792, 884
TasI	AATT	2 cut(s)	863, 896
TatI	WGTACW	3 cut(s)	119, 141, 963
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	577, 608, 756
Tru1I	TTAA	4 cut(s)	92, 212, 387, 492
Tru9I	TTAA	4 cut(s)	92, 212, 387, 492
TscAI	CASTG	5 cut(s)	209, 242, 251, 576, 921
TspDTI	ATGAA	3 cut(s)	20, 75, 685
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	5 cut(s)	209, 242, 251, 576, 921
Van91I	CCANNNNNTGG	2 cut(s)	413, 823
XapI	RAATTY	1 cut(s)	863
XspI	CTAG	3 cut(s)	461, 645, 843
ZraI	GACGTC	1 cut(s)	874
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.