Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Reverse (-)

5270664 .. 5282612

Gene Structure 11949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTTACACGCAACGCGTTGTTGGCACGTCACCTCGATTCGGCTGCAAACTCAGAATCGAGAAAAGTCGTCGTGGGATCATTGCCAAAGCTACGGCTGATAAAAGAGACGGTGATGACATCTAAGACTTTGCGGAGAAGGCTTCATCACGGAGATGTTGACGGAAAAGCGCATGAGCATTTGGAGGCATCAGCTTCAGATGGTCTGAATGAGCCTCTCCTCGGAAACTATGAAAGTTCAGATAGGCCTTCGGAGGAATCCGCACTGGCGGACCTCTGGAATGATGAGCGGAGAATGGAACAACTCCACTGGACTTTATTGTTTTCTCAGTTGATTACGGAGTGGGCACGATGGTTAGCAAATATTGTCCTAGGATCTGGATCACTTATTGGACGGTTTTTGACCTCAGCTACACAAAATGGACAAAGAACTAGTCTGCTTGCACCTGCCCTTACTCCTGTGCAAGAAGTAAGACTCAAAAACCTACGGCGAAGGCTTGAAGTCCCCTTTGATGGTTCTCGTGTGGAGCATCAAGATGCACTAAAACAATTATGGAGGTTGGCCTATCCGGATAGGGAGCTCCCACCTCTTAAATCTGAGCTTTGGAAAGATATGGGTTGGCAAGGTGCAGACCCTTCAACAGATTTTAGAGGTGGAGGGTTTATATCATTGGAGAACCTTATCTTTTTTGCCCAACAATATCCGGAATCATTCCATAGACTGTTGCACAAACAAGATGGAACCCGAGCTGAATGGGAATATCCTTTTGCTGTAGCTGGAATCAATATTTCATTTGTCTTGGCACAAATGTTGGATCTTCAATCAGCAAAGCCAACTTCGTTGGCAGGAATCCGATTCCTACAACTGCTCCAAGAAGATGAAATGGCATTTGATAACCTATATTGTGTAACCTTCCAAATGATGGATGCTCAATGGCTTGCAAAGCGTGCTTCGTATATGGAGTTCAATGATGTTATGAAGTCTACAACAACTCAGCTAGAGCGTGAGCTTGCCCTCGAAGATGTCACCAGCGTTAAAGATTTACCAGCATACAATCTATTGGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

357

Amino Acids

40.55

Weight (kDa)

5.9

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	161 - 326	2.6e-53	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccBSI	CCGCTC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	983
AccII	CGCG	1 cut(s)	17
AccIII	TCCGGA	2 cut(s)	568, 703
AciI	CCGC	4 cut(s)	133, 261, 269, 289
AclWI	GGATC	4 cut(s)	85, 382, 388, 822
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	4 cut(s)	40, 221, 512, 922
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	4 cut(s)	500, 639, 821, 967
AhlI	ACTAGT	1 cut(s)	431
AjiI	CACGTC	1 cut(s)	29
AluBI	AGCT	9 cut(s)	91, 194, 410, 580, 601, 749, 776, 997, 1009
AluI	AGCT	9 cut(s)	91, 194, 410, 580, 601, 749, 776, 997, 1009
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	4 cut(s)	85, 382, 388, 822
Ama87I	CYCGRG	1 cut(s)	744
Aor13HI	TCCGGA	2 cut(s)	568, 703
AoxI	GGCC	2 cut(s)	245, 561
ApeKI	GCWGC	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	23, 124, 1018
AvaI	CYCGRG	1 cut(s)	744
AvaII	GGWCC	1 cut(s)	271
AvrII	CCTAGG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	5 cut(s)	194, 345, 506, 731, 916
BceAI	ACGGC	2 cut(s)	110, 503
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	3 cut(s)	371, 432, 998
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	1 cut(s)	45
BlnI	CCTAGG	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	744
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	742
BmsI	GCATC	4 cut(s)	197, 526, 538, 916
Bpu10I	CCTNAGC	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	220, 370
BsaWI	WCCGGW	2 cut(s)	568, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 221, 512, 922
Bse1I	ACTGG	2 cut(s)	270, 314
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	1 cut(s)	379
BseAI	TCCGGA	2 cut(s)	568, 703
BseDI	CCNNGG	2 cut(s)	220, 370
BseGI	GGATG	1 cut(s)	931
BseJI	GATNNNNATC	1 cut(s)	379
BseLI	CCNNNNNNNGG	4 cut(s)	40, 221, 512, 922
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	5 cut(s)	66, 341, 420, 588, 1007
BseNI	ACTGG	2 cut(s)	270, 314
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	247, 563
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	744
BsiSI	CCGG	2 cut(s)	569, 704
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	4 cut(s)	40, 221, 512, 922
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	247, 563
BsoBI	CYCGRG	1 cut(s)	744
Bsp1286I	GDGCHC	2 cut(s)	349, 582
Bsp13I	TCCGGA	2 cut(s)	568, 703
Bsp143I	GATC	4 cut(s)	77, 374, 380, 814
BspACI	CCGC	4 cut(s)	133, 261, 269, 289
BspANI	GGCC	2 cut(s)	247, 563
BspCNI	CTCAG	5 cut(s)	65, 340, 419, 589, 1006
BspEI	TCCGGA	2 cut(s)	568, 703
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	4 cut(s)	85, 382, 388, 822
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	270, 314
BssECI	CCNNGG	2 cut(s)	220, 370
BssMI	GATC	4 cut(s)	77, 374, 380, 814
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	112, 396, 723
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstC8I	GCNNGC	4 cut(s)	441, 939, 948, 1011
BstDEI	CTNAG	6 cut(s)	52, 123, 327, 406, 597, 993
BstF5I	GGATG	1 cut(s)	931
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	4 cut(s)	80, 377, 383, 817
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	77, 374, 380, 814
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 139, 943, 947
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	2 cut(s)	374, 814
BstYI	RGATCY	2 cut(s)	374, 814
BsuRI	GGCC	2 cut(s)	247, 563
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	931
BtsIMutI	CAGTG	2 cut(s)	263, 307
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	4 cut(s)	441, 939, 948, 1011
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	271
CviAII	CATG	1 cut(s)	173
DdeI	CTNAG	6 cut(s)	52, 123, 327, 406, 597, 993
DpnI	GATC	4 cut(s)	79, 376, 382, 816
DpnII	GATC	4 cut(s)	77, 374, 380, 814
EciI	GGCGGA	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	176
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	983
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	938
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	3 cut(s)	371, 432, 998
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	247, 563
HapII	CCGG	2 cut(s)	569, 704
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	8 cut(s)	38, 56, 257, 474, 707, 780, 849, 855
HpaII	CCGG	2 cut(s)	569, 704
HphI	GGTGA	3 cut(s)	23, 124, 1018
Hpy166II	GTNNAC	2 cut(s)	160, 984
Hpy188I	TCNGA	8 cut(s)	55, 199, 207, 224, 241, 253, 598, 854
Hpy188III	TCNNGA	6 cut(s)	60, 277, 378, 533, 569, 704
Hpy8I	GTNNAC	2 cut(s)	160, 984
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	132, 258, 486, 645, 922
HpyCH4III	ACNGT	3 cut(s)	112, 396, 723
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	7 cut(s)	47, 443, 463, 539, 629, 727, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 139, 943, 947
HpyF3I	CTNAG	6 cut(s)	52, 123, 327, 406, 597, 993
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	2 cut(s)	568, 703
Kzo9I	GATC	4 cut(s)	77, 374, 380, 814
LmnI	GCTCC	4 cut(s)	526, 577, 585, 873
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	4 cut(s)	197, 526, 538, 916
MaeI	CTAG	3 cut(s)	371, 432, 998
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	4 cut(s)	4, 29, 907, 1024
MalI	GATC	4 cut(s)	79, 376, 382, 816
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	4 cut(s)	77, 374, 380, 814
MboII	GAAGA	3 cut(s)	809, 887, 1031
MflI	RGATCY	2 cut(s)	374, 814
MhlI	GDGCHC	2 cut(s)	349, 582
MluCI	AATT	1 cut(s)	548
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	792
MroI	TCCGGA	2 cut(s)	568, 703
MseI	TTAA	2 cut(s)	591, 1035
MslI	CAYNNNNRTG	2 cut(s)	153, 534
MspI	CCGG	2 cut(s)	569, 704
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	4 cut(s)	23, 139, 943, 947
NdeII	GATC	4 cut(s)	77, 374, 380, 814
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	742
NmuCI	GTSAC	2 cut(s)	29, 1024
PaqCI	CACCTGC	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	247
PfeI	GAWTC	7 cut(s)	38, 56, 257, 707, 780, 849, 855
PflMI	CCANNNNNTGG	1 cut(s)	922
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	271
PsrI	GAACNNNNNNTAC	2 cut(s)	947, 979
PsuI	RGATCY	2 cut(s)	374, 814
RseI	CAYNNNNRTG	2 cut(s)	153, 534
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	591, 1035
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	4 cut(s)	77, 374, 380, 814
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	349, 582
SfaNI	GCATC	4 cut(s)	197, 526, 538, 916
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	153, 534
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	1 cut(s)	548
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	4 cut(s)	133, 261, 269, 289
SspI	AATATT	2 cut(s)	364, 787
SspMI	CTAG	3 cut(s)	371, 432, 998
SstI	GAGCTC	1 cut(s)	582
StuI	AGGCCT	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	112, 396, 723
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	3 cut(s)	36, 59, 1017
TasI	AATT	1 cut(s)	548
TfiI	GAWTC	7 cut(s)	38, 56, 257, 707, 780, 849, 855
Tru1I	TTAA	2 cut(s)	591, 1035
Tru9I	TTAA	2 cut(s)	591, 1035
TscAI	CASTG	2 cut(s)	270, 314
TseFI	GTSAC	2 cut(s)	29, 1024
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	2 cut(s)	29, 1024
TspDTI	ATGAA	5 cut(s)	134, 246, 780, 894, 992
TspGWI	ACGGA	3 cut(s)	165, 177, 353
TspRI	CASTG	2 cut(s)	270, 314
Van91I	CCANNNNNTGG	1 cut(s)	922
VpaK11BI	GGWCC	1 cut(s)	271
XmaJI	CCTAGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	983
XspI	CTAG	3 cut(s)	371, 432, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.