Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Forward (+)

41267003 .. 41280150

Gene Structure 13148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGACATCTAAGACTTTGCGGAGAAGGCTTCATCATGGAGATGTTGATGGAAAAGCGCACGAGCATTTGGAGGCATCAGCTTCAGAAGATGGTCTTAATGAGCCTCTCCTCGGAAACTATGAAAGTTCAGAGAGGCATTCGGAGGAATCCGCACTTGCGGACCTCTGGAATGATGAGCGGAGAATGGAACAACTCCACTGGACTTTATTGTTTTCTCAGTTGATTGCGCAGTGGGCGCGATGGTTAGCAAATATTGTTCTGGGATCTGGATCACTTATTGGACGGTTTTTGACCTCAGCTACACAAAATGGACAAAGAACTAGTCTGCTTGCACCTGCCCTTACTCCTGTGCAAGAAGTAAGACTCAAAAACCTAAGGCAAAGGCTTGAAGTCCCCTTTGATGGTTCTCGTGTGGAGCATCAAGATGCACTAAAACAATTATGGAGGTTGGCTTATCCGGATAGGGAGCTCCCACCTCTTAAATCTGAGCTTTGGAAAGATATGGGTTGGCAAGGTGCAGACCCTTCAACAGATTTTAGAGGTGGAGGGTTTATATCATTGGAGAACCTTATCTTTTTTGCCCAACAATATCCGGAATCATTCCATAGACTGTTGCACAAACAAGATGGAACCCGAGCTGAATGGGAATATCCTTTCGCTGTAGCTGGAATCAATATTTCATTTGTCTTGGCACAAATGTTGGATCTTCAATCAGCAAAGCCAACTTCGTTGGCAGGAATCCGATTCCTACAACTGCTCCAAGAAGATGAAATGGCATTTGATAACCTATATTGTGTAACCTTCCAAATGATGGATGCTCAATGGCTTGCGAAGCGTGCTTCGTATATGGAGTTCAATGATGTTATGAAGTCGACAACAACTCAGCTAGAGCGTGAGCTTGCCCTCGAAGATGTCACCAGCGTTAAAGATTTACCAGCATACAATCTATTGGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

319

Amino Acids

36.52

Weight (kDa)

5.35

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	124 - 289	1.4e-53	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc16I	TGCGCA	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	872
AccII	CGCG	1 cut(s)	238
AccIII	TCCGGA	2 cut(s)	457, 592
AciI	CCGC	4 cut(s)	19, 150, 158, 178
AclWI	GGATC	3 cut(s)	271, 277, 711
AcuI	CTGAAG	1 cut(s)	66
AfiI	CCNNNNNNNGG	3 cut(s)	110, 401, 811
AgsI	TTSAA	4 cut(s)	389, 528, 710, 856
AhlI	ACTAGT	1 cut(s)	320
AluBI	AGCT	8 cut(s)	80, 299, 469, 490, 638, 665, 886, 898
AluI	AGCT	8 cut(s)	80, 299, 469, 490, 638, 665, 886, 898
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	3 cut(s)	271, 277, 711
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	2 cut(s)	457, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AspLEI	GCGC	3 cut(s)	58, 229, 238
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	907
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	471
BauI	CACGAG	2 cut(s)	59, 408
Bbv12I	GWGCWC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	295
BccI	CCATC	6 cut(s)	41, 83, 234, 395, 620, 805
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	321, 887
BfmI	CTRYAG	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	631
BmsI	GCATC	4 cut(s)	83, 415, 427, 805
Bpu10I	CCTNAGC	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	2 cut(s)	457, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 401, 811
Bse1I	ACTGG	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	268
BseAI	TCCGGA	2 cut(s)	457, 592
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	820
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	110, 401, 811
BseMII	CTCAG	4 cut(s)	230, 309, 477, 896
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	458, 593
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	110, 401, 811
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp13I	TCCGGA	2 cut(s)	457, 592
Bsp143I	GATC	3 cut(s)	263, 269, 703
BspACI	CCGC	4 cut(s)	19, 150, 158, 178
BspCNI	CTCAG	4 cut(s)	229, 308, 478, 895
BspEI	TCCGGA	2 cut(s)	457, 592
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	3 cut(s)	271, 277, 711
BsrBI	CCGCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	263, 269, 703
BssSI	CACGAG	2 cut(s)	59, 408
Bst2BI	CACGAG	2 cut(s)	59, 408
Bst4CI	ACNGT	2 cut(s)	285, 612
BstC8I	GCNNGC	4 cut(s)	330, 828, 837, 900
BstDEI	CTNAG	6 cut(s)	9, 216, 295, 374, 486, 882
BstF5I	GGATG	1 cut(s)	820
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	3 cut(s)	58, 229, 238
BstKTI	GATC	3 cut(s)	266, 272, 706
BstMBI	GATC	3 cut(s)	263, 269, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 233, 235, 832, 836
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	263, 703
BstYI	RGATCY	2 cut(s)	263, 703
Bsu36I	CCTNAGG	1 cut(s)	374
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	2 cut(s)	196, 236
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	4 cut(s)	330, 828, 837, 900
CfoI	GCGC	3 cut(s)	58, 229, 238
Cfr13I	GGNCC	1 cut(s)	160
CviAII	CATG	1 cut(s)	35
DdeI	CTNAG	6 cut(s)	9, 216, 295, 374, 486, 882
DpnI	GATC	3 cut(s)	265, 271, 705
DpnII	GATC	3 cut(s)	263, 269, 703
Ecl136II	GAGCTC	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	471
FaeI	CATG	1 cut(s)	38
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	872
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	321, 887
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	3 cut(s)	57, 228, 237
HapII	CCGG	2 cut(s)	458, 593
HhaI	GCGC	3 cut(s)	58, 229, 238
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	3 cut(s)	56, 227, 236
HinP1I	GCGC	3 cut(s)	56, 227, 236
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HinfI	GANTC	6 cut(s)	146, 363, 596, 669, 738, 744
HpaII	CCGG	2 cut(s)	458, 593
HphI	GGTGA	1 cut(s)	907
Hpy166II	GTNNAC	1 cut(s)	873
Hpy188I	TCNGA	6 cut(s)	85, 113, 130, 142, 487, 743
Hpy188III	TCNNGA	5 cut(s)	166, 267, 422, 458, 593
Hpy8I	GTNNAC	1 cut(s)	873
HpyAV	CCTTC	3 cut(s)	18, 534, 811
HpyCH4III	ACNGT	2 cut(s)	285, 612
HpyCH4V	TGCA	5 cut(s)	332, 352, 428, 518, 616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 233, 235, 832, 836
HpyF3I	CTNAG	6 cut(s)	9, 216, 295, 374, 486, 882
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	3 cut(s)	56, 227, 236
Kpn2I	TCCGGA	2 cut(s)	457, 592
Kzo9I	GATC	3 cut(s)	263, 269, 703
LmnI	GCTCC	4 cut(s)	415, 466, 474, 762
LweI	GCATC	4 cut(s)	83, 415, 427, 805
MaeI	CTAG	2 cut(s)	321, 887
MaeIII	GTNAC	2 cut(s)	796, 913
MalI	GATC	3 cut(s)	265, 271, 705
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	3 cut(s)	263, 269, 703
MboII	GAAGA	4 cut(s)	98, 698, 776, 920
MflI	RGATCY	2 cut(s)	263, 703
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	681
MroI	TCCGGA	2 cut(s)	457, 592
MseI	TTAA	3 cut(s)	96, 480, 924
MslI	CAYNNNNRTG	2 cut(s)	39, 423
MspI	CCGG	2 cut(s)	458, 593
Mva1269I	GAATGC	1 cut(s)	136
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	5 cut(s)	25, 233, 235, 832, 836
NdeII	GATC	3 cut(s)	263, 269, 703
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	913
NsbI	TGCGCA	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	5 cut(s)	146, 596, 669, 738, 744
PflMI	CCANNNNNTGG	1 cut(s)	811
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	160
PsrI	GAACNNNNNNTAC	2 cut(s)	836, 868
PsuI	RGATCY	2 cut(s)	263, 703
RseI	CAYNNNNRTG	2 cut(s)	39, 423
SacI	GAGCTC	1 cut(s)	471
SalI	GTCGAC	1 cut(s)	871
SaqAI	TTAA	3 cut(s)	96, 480, 924
Sau3AI	GATC	3 cut(s)	263, 269, 703
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	4 cut(s)	83, 415, 427, 805
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	39, 423
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	1 cut(s)	437
SsiI	CCGC	4 cut(s)	19, 150, 158, 178
SspI	AATATT	2 cut(s)	253, 676
SspMI	CTAG	2 cut(s)	321, 887
SstI	GAGCTC	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	285, 612
TaqI	TCGA	2 cut(s)	872, 906
TasI	AATT	1 cut(s)	437
TfiI	GAWTC	5 cut(s)	146, 596, 669, 738, 744
Tru1I	TTAA	3 cut(s)	96, 480, 924
Tru9I	TTAA	3 cut(s)	96, 480, 924
TscAI	CASTG	2 cut(s)	203, 236
TseFI	GTSAC	1 cut(s)	913
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	5 cut(s)	20, 135, 669, 783, 881
TspRI	CASTG	2 cut(s)	203, 236
Van91I	CCANNNNNTGG	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	872
XspI	CTAG	2 cut(s)	321, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.