Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Forward (+)

43504344 .. 43517957

Gene Structure 13614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG357200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCTTTTGTCTTTTGTGTTTGGGTTGAAAAAGGGGGGATCATTGCCAGAGCTACGGCTGGTAAAAGAGACGGTGATGACATCTAAGACTTTGCGGAGAAGGCTTCATCATGGAGATGTTGATGGAAAAGCGCACGAGCATTTGGAGGCATCAGCTTCAGAAGATGGTCTTAATGAGCCTCTCCTCGGAAACTACCAAAGTTCAGAGAGGCATTCGGAGGAATCTGCACTTGCGGACCTCTGGAATGATGAGCGGAGAATGGAACAACTCCACTGGACTTTATTGTTTTCTCAGTTGATTGCGCAGTGGGCACGATGGTTAGCAAATATTGTTCTGGGATCTGGATCACTTATTGGACGGTTTTTGACCTCAGCTACACAAAATGGACAAAGAACTAGTCTGCTTGCACCTGCCCTTACTCCTGTGCAAGAAGTAAGACTCAAAAACCTACGGCAAAGGCTTGAAGTCCCCTTTGATGGTTCTCGTGTGGAGCATCAAGATGCACTAAAACAATTATGGAGGTTGGCTTATCCGGATAGGGAGCTCCCACCTCTTAAATCTGAGCTTTGGAAAGATATGGGTTGGCAAGGTGCAGACCCTTCAACAGATTTTAGAGGTGGAGGGTTTATATCATTGGAGAACCTTATCTTTTTTGCCCAACAATATCCGGAATCATTCCATAGACTGTTGCACAAACAAGATGGAACCCGAGCTGAATGGGAATATCCTTTCGCTGTAGCTGGAATCAATATTTCATTTGTCTTGGCACAAATGTTGGATCTTCAATCAGCAAAGCCAACTTCGTTGGCAGGAATCCGATTCCTACAACTGCTCCAAGAAGATGAAATGGCATTTGATAACCTATATTGTGTAACCTTCCAAATGATGGATGCTCAATGGCTTGCGAAGCGTGCTTCGTATATGGAGTTCAATGATGTTATGAAGTCGACAACAACTCAGCTAGAGCGTGAGCTTGCCCTCGAAGATGTCACCAGCGTTAAAGATTTACCAGCATACAATCTATTGGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

344

Amino Acids

39.27

Weight (kDa)

5.66

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	149 - 314	1.6e-53	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
Acc16I	TGCGCA	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccBSI	CCGCTC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	947
AccIII	TCCGGA	2 cut(s)	532, 667
AciI	CCGC	3 cut(s)	94, 233, 253
AclWI	GGATC	4 cut(s)	46, 346, 352, 786
AcuI	CTGAAG	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	185, 476, 886
AgsI	TTSAA	5 cut(s)	28, 464, 603, 785, 931
AhlI	ACTAGT	1 cut(s)	395
AluBI	AGCT	9 cut(s)	52, 155, 374, 544, 565, 713, 740, 961, 973
AluI	AGCT	9 cut(s)	52, 155, 374, 544, 565, 713, 740, 961, 973
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	4 cut(s)	46, 346, 352, 786
Ama87I	CYCGRG	1 cut(s)	708
Aor13HI	TCCGGA	2 cut(s)	532, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
AspLEI	GCGC	2 cut(s)	133, 304
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	85, 982
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	546
BauI	CACGAG	2 cut(s)	134, 483
Bbv12I	GWGCWC	1 cut(s)	546
BbvCI	CCTCAGC	1 cut(s)	370
BccI	CCATC	6 cut(s)	116, 158, 309, 470, 695, 880
BceAI	ACGGC	2 cut(s)	71, 467
BcoDI	GTCTC	1 cut(s)	62
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	396, 962
BfmI	CTRYAG	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	706
BmsI	GCATC	4 cut(s)	158, 490, 502, 880
Bpu10I	CCTNAGC	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	2 cut(s)	532, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 476, 886
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	343
BseAI	TCCGGA	2 cut(s)	532, 667
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	895
BseJI	GATNNNNATC	1 cut(s)	343
BseLI	CCNNNNNNNGG	3 cut(s)	185, 476, 886
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	4 cut(s)	305, 384, 552, 971
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	313
BsgI	GTGCAG	2 cut(s)	210, 612
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	533, 668
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	185, 476, 886
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	708
Bsp1286I	GDGCHC	2 cut(s)	313, 546
Bsp13I	TCCGGA	2 cut(s)	532, 667
Bsp143I	GATC	4 cut(s)	38, 338, 344, 778
BspACI	CCGC	3 cut(s)	94, 233, 253
BspCNI	CTCAG	4 cut(s)	304, 383, 553, 970
BspEI	TCCGGA	2 cut(s)	532, 667
BspLI	GGNNCC	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	4 cut(s)	46, 346, 352, 786
BsrBI	CCGCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	4 cut(s)	38, 338, 344, 778
BssSI	CACGAG	2 cut(s)	134, 483
Bst2BI	CACGAG	2 cut(s)	134, 483
Bst4CI	ACNGT	3 cut(s)	73, 360, 687
BstC8I	GCNNGC	4 cut(s)	405, 903, 912, 975
BstDEI	CTNAG	5 cut(s)	84, 291, 370, 561, 957
BstF5I	GGATG	1 cut(s)	895
BstHHI	GCGC	2 cut(s)	133, 304
BstKTI	GATC	4 cut(s)	41, 341, 347, 781
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	38, 338, 344, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 308, 907, 911
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	338, 778
BstYI	RGATCY	2 cut(s)	338, 778
BtsCI	GGATG	1 cut(s)	895
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	271, 311
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	4 cut(s)	405, 903, 912, 975
CfoI	GCGC	2 cut(s)	133, 304
Cfr13I	GGNCC	1 cut(s)	235
CviAII	CATG	1 cut(s)	110
DdeI	CTNAG	5 cut(s)	84, 291, 370, 561, 957
DpnI	GATC	4 cut(s)	40, 340, 346, 780
DpnII	GATC	4 cut(s)	38, 338, 344, 778
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	708
EcoICRI	GAGCTC	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	1 cut(s)	113
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	947
FokI	GGATG	1 cut(s)	902
FriOI	GRGCYC	1 cut(s)	546
FspBI	CTAG	2 cut(s)	396, 962
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	2 cut(s)	132, 303
HapII	CCGG	2 cut(s)	533, 668
HhaI	GCGC	2 cut(s)	133, 304
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	2 cut(s)	131, 302
HinP1I	GCGC	2 cut(s)	131, 302
HincII	GTYRAC	1 cut(s)	948
HindII	GTYRAC	1 cut(s)	948
HinfI	GANTC	6 cut(s)	221, 438, 671, 744, 813, 819
HpaII	CCGG	2 cut(s)	533, 668
HphI	GGTGA	2 cut(s)	85, 982
Hpy166II	GTNNAC	1 cut(s)	948
Hpy188I	TCNGA	6 cut(s)	160, 188, 205, 217, 562, 818
Hpy188III	TCNNGA	5 cut(s)	241, 342, 497, 533, 668
Hpy8I	GTNNAC	1 cut(s)	948
HpyAV	CCTTC	3 cut(s)	93, 609, 886
HpyCH4III	ACNGT	3 cut(s)	73, 360, 687
HpyCH4V	TGCA	6 cut(s)	227, 407, 427, 503, 593, 691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 308, 907, 911
HpyF3I	CTNAG	5 cut(s)	84, 291, 370, 561, 957
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	2 cut(s)	131, 302
Kpn2I	TCCGGA	2 cut(s)	532, 667
Kzo9I	GATC	4 cut(s)	38, 338, 344, 778
LmnI	GCTCC	4 cut(s)	490, 541, 549, 837
LweI	GCATC	4 cut(s)	158, 490, 502, 880
MaeI	CTAG	2 cut(s)	396, 962
MaeIII	GTNAC	2 cut(s)	871, 988
MalI	GATC	4 cut(s)	40, 340, 346, 780
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	4 cut(s)	38, 338, 344, 778
MboII	GAAGA	4 cut(s)	173, 773, 851, 995
MflI	RGATCY	2 cut(s)	338, 778
MhlI	GDGCHC	2 cut(s)	313, 546
MluCI	AATT	1 cut(s)	512
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	756
MroI	TCCGGA	2 cut(s)	532, 667
MseI	TTAA	3 cut(s)	171, 555, 999
MslI	CAYNNNNRTG	2 cut(s)	114, 498
MspI	CCGG	2 cut(s)	533, 668
Mva1269I	GAATGC	1 cut(s)	211
MwoI	GCNNNNNNNGC	4 cut(s)	100, 308, 907, 911
NdeII	GATC	4 cut(s)	38, 338, 344, 778
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	988
NsbI	TGCGCA	1 cut(s)	303
PaqCI	CACCTGC	1 cut(s)	418
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	5 cut(s)	221, 671, 744, 813, 819
PflMI	CCANNNNNTGG	1 cut(s)	886
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	706
PspPI	GGNCC	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	911, 943
PsuI	RGATCY	2 cut(s)	338, 778
RseI	CAYNNNNRTG	2 cut(s)	114, 498
SacI	GAGCTC	1 cut(s)	546
SalI	GTCGAC	1 cut(s)	946
SaqAI	TTAA	3 cut(s)	171, 555, 999
Sau3AI	GATC	4 cut(s)	38, 338, 344, 778
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	432
SduI	GDGCHC	2 cut(s)	313, 546
SfaNI	GCATC	4 cut(s)	158, 490, 502, 880
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	114, 498
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	1 cut(s)	512
SsiI	CCGC	3 cut(s)	94, 233, 253
SspI	AATATT	2 cut(s)	328, 751
SspMI	CTAG	2 cut(s)	396, 962
SstI	GAGCTC	1 cut(s)	546
TaaI	ACNGT	3 cut(s)	73, 360, 687
TaqI	TCGA	2 cut(s)	947, 981
TasI	AATT	1 cut(s)	512
TfiI	GAWTC	5 cut(s)	221, 671, 744, 813, 819
Tru1I	TTAA	3 cut(s)	171, 555, 999
Tru9I	TTAA	3 cut(s)	171, 555, 999
TscAI	CASTG	2 cut(s)	278, 311
TseFI	GTSAC	1 cut(s)	988
Tsp45I	GTSAC	1 cut(s)	988
TspDTI	ATGAA	4 cut(s)	95, 744, 858, 956
TspRI	CASTG	2 cut(s)	278, 311
Van91I	CCANNNNNTGG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	947
XspI	CTAG	2 cut(s)	396, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.