Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Reverse (-)

1515195 .. 1520292

Gene Structure 5098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1014800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACATCACGAACTTTGAGGAAAAGGCTTCGTCATGCGGATGTTGATGGGAAAAAGGTAGAACATTTGGAGACGTCGGAGTCAGATGATCTTAATGTGCCTCTATTGGGGAATTATTCAGATAGGCATGCAGAGGAAACGACACTTGAAGAGATCTGGGATGATGAGCGGAGAAAGGAACACCTCCATTGGACCCTTCTGTTTTCTCAGTTGATTGCACAGTGGGCACGGTGGTTAGCAAGTATTGTTCTTGGATCTGGATCGCTTATTGGACGACTTTTGACCTTCTTTTCAAGTACACAAAATGGAGAAAGCGCTAAGTTGTTTGCTCCTCCCCTTAGTCCTTTGCAAGAAGCAAGACTCAGATATCTACGACAAAGGCTTCAAGTACCCTTTGATGGTTCTCGCATGGAGCATCAAGACGCGCTCTTAGAGTTATGGAGGTTGGCTTATCCGGATACGGAGCTCCCACCTCTTCAATCAGACCTTTGGGAACAGATGGGCTGGCAAGGTTCAGACCCTTCAACAGATTTTAGAGGTGGGGGATTTATATCATTGGAGAATCTTATCTTTTTTGCCCGACAGTATCCGGAATCATTCCAGAGATTGTTGCACAAGCAAGATGGAACTAGAGCTGAGTGGGAATATCCCTTTGCTGTTGCTGGCATCAATATTTCTTTTGTCTTGGCACAAATGTTGGATCTTCAATCAGCAAAGCCAACAACTTTGGCTGGAATCCGTTTTCTGGAACTGCTTAAAGAAGATGAGATGGCATTTGACAACCTTTATTGTGTAGCCTTCCAGATGATGGATGCTCAATGGCTCGTAAAGCGTGCTTCTTATATGGACTTCAATGATGTCATGAAGTCTACGACAAGTCAGTTAGAACGCGAGCTTGCACTCGAAGATGTCTCCAGTGTAAAAGATTTACCAGCATACAATCTGTTGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

319

Amino Acids

36.82

Weight (kDa)

5.14

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	123 - 288	2.1e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	79
AatII	GACGTC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	869
AccII	CGCG	2 cut(s)	425, 891
AccIII	TCCGGA	2 cut(s)	454, 589
AciI	CCGC	2 cut(s)	38, 169
AclWI	GGATC	3 cut(s)	262, 268, 708
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	298, 390
AfeI	AGCGCT	1 cut(s)	316
AfiI	CCNNNNNNNGG	4 cut(s)	107, 398, 745, 808
AgsI	TTSAA	7 cut(s)	149, 294, 386, 479, 525, 707, 853
AluBI	AGCT	3 cut(s)	466, 635, 895
AluI	AGCT	3 cut(s)	466, 635, 895
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	65, 916
AlwI	GGATC	3 cut(s)	262, 268, 708
Aor13HI	TCCGGA	2 cut(s)	454, 589
Aor51HI	AGCGCT	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	317, 427
AspS9I	GGNCC	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	468
BccI	CCATC	6 cut(s)	41, 392, 493, 617, 763, 802
BciVI	GTATCC	2 cut(s)	451, 597
BcoDI	GTCTC	2 cut(s)	65, 916
BfaI	CTAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	318
BfuI	GTATCC	2 cut(s)	451, 597
BglII	AGATCT	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	3 cut(s)	424, 675, 802
BpmI	CTGGAG	1 cut(s)	898
BsaBI	GATNNNNATC	2 cut(s)	259, 550
BsaHI	GRCGYC	1 cut(s)	74
BsaWI	WCCGGW	2 cut(s)	454, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 398, 745, 808
Bse1I	ACTGG	1 cut(s)	915
Bse8I	GATNNNNATC	2 cut(s)	259, 550
BseAI	TCCGGA	2 cut(s)	454, 589
BseGI	GGATG	3 cut(s)	46, 166, 817
BseJI	GATNNNNATC	2 cut(s)	259, 550
BseLI	CCNNNNNNNGG	4 cut(s)	107, 398, 745, 808
BseMII	CTCAG	3 cut(s)	221, 376, 627
BseNI	ACTGG	1 cut(s)	915
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	229
Bsh1236I	CGCG	2 cut(s)	425, 891
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	455, 590
BslI	CCNNNNNNNGG	4 cut(s)	107, 398, 745, 808
BsmAI	GTCTC	2 cut(s)	65, 916
BsmBI	CGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	229, 468
Bsp13I	TCCGGA	2 cut(s)	454, 589
Bsp143I	GATC	5 cut(s)	88, 153, 254, 260, 700
BspACI	CCGC	2 cut(s)	38, 169
BspCNI	CTCAG	3 cut(s)	220, 375, 628
BspEI	TCCGGA	2 cut(s)	454, 589
BspFNI	CGCG	2 cut(s)	425, 891
BspHI	TCATGA	1 cut(s)	861
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	3 cut(s)	262, 268, 708
BsrBI	CCGCTC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	915
BssMI	GATC	5 cut(s)	88, 153, 254, 260, 700
BssNI	GRCGYC	1 cut(s)	74
Bst4CI	ACNGT	3 cut(s)	222, 231, 585
Bst6I	CTCTTC	2 cut(s)	144, 480
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	6 cut(s)	129, 506, 664, 834, 893, 897
BstDEI	CTNAG	6 cut(s)	207, 318, 338, 362, 430, 636
BstF5I	GGATG	3 cut(s)	46, 166, 817
BstFNI	CGCG	2 cut(s)	425, 891
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	317, 427
BstKTI	GATC	5 cut(s)	91, 156, 257, 263, 703
BstMAI	GTCTC	2 cut(s)	65, 916
BstMBI	GATC	5 cut(s)	88, 153, 254, 260, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 829
BstNSI	RCATGY	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	2 cut(s)	425, 891
BstX2I	RGATCY	3 cut(s)	153, 254, 700
BstYI	RGATCY	3 cut(s)	153, 254, 700
BsuI	GTATCC	2 cut(s)	451, 597
BtsCI	GGATG	3 cut(s)	46, 166, 817
BtsIMutI	CAGTG	2 cut(s)	227, 922
Cac8I	GCNNGC	6 cut(s)	129, 506, 664, 834, 893, 897
CciI	TCATGA	1 cut(s)	861
CfoI	GCGC	2 cut(s)	317, 427
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	297, 389
CviAII	CATG	4 cut(s)	35, 128, 409, 862
CviQI	GTAC	2 cut(s)	297, 389
DdeI	CTNAG	6 cut(s)	207, 318, 338, 362, 430, 636
DpnI	GATC	5 cut(s)	90, 155, 256, 262, 702
DpnII	GATC	5 cut(s)	88, 153, 254, 260, 700
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	144, 480
EarI	CTCTTC	2 cut(s)	144, 480
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	192
Eco47III	AGCGCT	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	4 cut(s)	38, 131, 412, 865
FaiI	YATR	9 cut(s)	36, 129, 410, 439, 551, 843, 845, 863, 937
FatI	CATG	4 cut(s)	34, 127, 408, 861
FblI	GTMKAC	1 cut(s)	869
FokI	GGATG	3 cut(s)	53, 173, 824
FriOI	GRGCYC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	2 cut(s)	316, 426
GsuI	CTGGAG	1 cut(s)	898
HaeII	RGCGCY	1 cut(s)	318
HapII	CCGG	2 cut(s)	455, 590
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	2 cut(s)	317, 427
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	38, 131, 412, 865
Hin6I	GCGC	2 cut(s)	315, 425
HinP1I	GCGC	2 cut(s)	315, 425
HinfI	GANTC	5 cut(s)	80, 360, 562, 593, 735
HpaII	CCGG	2 cut(s)	455, 590
Hpy166II	GTNNAC	2 cut(s)	299, 870
Hpy188I	TCNGA	6 cut(s)	79, 85, 121, 365, 484, 517
Hpy188III	TCNNGA	9 cut(s)	9, 258, 419, 455, 590, 601, 746, 802, 862
Hpy8I	GTNNAC	2 cut(s)	299, 870
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	206, 295, 531, 808
HpyCH4III	ACNGT	3 cut(s)	222, 231, 585
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	5 cut(s)	131, 218, 349, 613, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 829
HpyF3I	CTNAG	6 cut(s)	207, 318, 338, 362, 430, 636
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	38, 131, 412, 865
HspAI	GCGC	2 cut(s)	315, 425
Kpn2I	TCCGGA	2 cut(s)	454, 589
Kzo9I	GATC	5 cut(s)	88, 153, 254, 260, 700
LmnI	GCTCC	4 cut(s)	334, 412, 463, 471
LweI	GCATC	3 cut(s)	424, 675, 802
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	74
MalI	GATC	5 cut(s)	90, 155, 256, 262, 702
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	5 cut(s)	88, 153, 254, 260, 700
MboII	GAAGA	5 cut(s)	161, 467, 695, 773, 917
MflI	RGATCY	3 cut(s)	153, 254, 700
MhlI	GDGCHC	2 cut(s)	229, 468
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	89, 354
MmeI	TCCRAC	2 cut(s)	57, 678
MnlI	CCTC	8 cut(s)	12, 111, 127, 194, 342, 435, 483, 530
MroI	TCCGGA	2 cut(s)	454, 589
MseI	TTAA	2 cut(s)	93, 756
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	2 cut(s)	455, 590
MvnI	CGCG	2 cut(s)	425, 891
MwoI	GCNNNNNNNGC	2 cut(s)	224, 829
NdeII	GATC	5 cut(s)	88, 153, 254, 260, 700
NlaIII	CATG	4 cut(s)	38, 131, 412, 865
NlaIV	GGNNCC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	861
PfeI	GAWTC	3 cut(s)	562, 593, 735
PflMI	CCANNNNNTGG	1 cut(s)	808
PleI	GAGTC	2 cut(s)	88, 354
PpsI	GAGTC	2 cut(s)	88, 354
Psp124BI	GAGCTC	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	3 cut(s)	153, 254, 700
RsaI	GTAC	2 cut(s)	298, 390
RsaNI	GTAC	2 cut(s)	297, 389
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	93, 756
Sau3AI	GATC	5 cut(s)	88, 153, 254, 260, 700
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	2 cut(s)	89, 354
SduI	GDGCHC	2 cut(s)	229, 468
SfaNI	GCATC	3 cut(s)	424, 675, 802
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	39
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	38, 169
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	222, 231, 585
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	903
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	3 cut(s)	562, 593, 735
Tru1I	TTAA	2 cut(s)	93, 756
Tru9I	TTAA	2 cut(s)	93, 756
TscAI	CASTG	2 cut(s)	227, 922
TspDTI	ATGAA	1 cut(s)	878
TspGWI	ACGGA	2 cut(s)	476, 728
TspRI	CASTG	2 cut(s)	227, 922
Van91I	CCANNNNNTGG	1 cut(s)	808
VpaK11BI	GGWCC	1 cut(s)	192
XceI	RCATGY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	869
XspI	CTAG	1 cut(s)	630
ZraI	GACGTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.