Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Reverse (-)

22371630 .. 22384494

Gene Structure 12865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29390.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACATCAAAGACTTTGAGGAGAAGGCTTCACCATGGAGATGTTGATGGAAAAACGCATGAGCATCTGGAGGCATCAGCTTCAGATGATCTTAATGAGCCTCTACTGGGCAACTATGAATCTTCAGATAGGCATTCCGAGGACTGCACACTTGCCGAGATCTTAAATGATGACCGCAGAATGGAACAACTCCACTGGACTTTCTTGTTCTCTCAGTTGATTGCACAGTGGGCACGATGGTTAGCAAATATTGTCCTGGGATCTGGATCACTTATTGGACGGTTTTTGACCTCAGCTATAGAAAATGGACAAAAAACTAGTCTGCGGGCACCTACCCTAATTCCTCTGCAAGAAGTAAGACTCAAAAACCTACGACAAAGGCTTGAAGTCCCCTTTGATGGTTCTCGTGTGGAGCATCAAGATGCACTAAAACAATTATGGAGATTGGCTTATCCGGATAGGGAGCTCCCGCCTCTTAAATCTGAGCTTTGGAAAGAGATGGGTTGGCAAGGTGCAGACCCTTCGACAGATTTTAGAGGTGGAGGGTTTATATCATTGGAGAACCTTATCTTTTTTGCCCAACAATATCCGGAATCATTCCATAGATTGTTGCACAAACAAGAAGGAACCCGAGCTGAGTGGGAATATCCTTTTGCTGTAGCTGGCATCAATATTTCATTTGTCTTGGCACAAATGTTGGATCTCCAGTCAGCAAAGCCAACTTCGTTGGCAGGAATTCGATTCCTACAACTTCTTGAAGAAGATGAAATGGCATTTGATAACCTATTTTGTGTAACTTTCCAAATGATGGATGCTCAATGGCTCGCAAAGCGTGCTTCGTATATGGAGTTCAATGATGTAATGAAGTCTACAAGAACTCAGCTAGAGCGTGAGCTTGCCCTCGAGGATGTCTCCAGCGTTAAGGATTTACCTGCATACAATCTATTGGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

319

Amino Acids

36.6

Weight (kDa)

5.23

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	123 - 180	2.4e-16	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	940
AccB1I	GGYRCC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	869
AccIII	TCCGGA	2 cut(s)	454, 589
AciI	CCGC	3 cut(s)	175, 325, 470
AclWI	GGATC	3 cut(s)	268, 274, 708
AcsI	RAATTY	1 cut(s)	735
AcuI	CTGAAG	2 cut(s)	66, 108
AfiI	CCNNNNNNNGG	4 cut(s)	107, 181, 398, 808
AgsI	TTSAA	3 cut(s)	386, 758, 853
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	8 cut(s)	80, 296, 466, 487, 635, 662, 883, 895
AluI	AGCT	8 cut(s)	80, 296, 466, 487, 635, 662, 883, 895
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	916
AlwI	GGATC	3 cut(s)	268, 274, 708
Ama87I	CYCGRG	2 cut(s)	630, 902
Aor13HI	TCCGGA	2 cut(s)	454, 589
ApoI	RAATTY	1 cut(s)	735
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	2 cut(s)	630, 902
BaeGI	GKGCMC	2 cut(s)	235, 331
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	292
BccI	CCATC	5 cut(s)	41, 231, 392, 493, 802
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	916
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	2 cut(s)	318, 884
BfmI	CTRYAG	2 cut(s)	297, 657
BfuAI	ACCTGC	1 cut(s)	940
BglII	AGATCT	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	257
BmeT110I	CYCGRG	2 cut(s)	630, 902
BmiI	GGNNCC	2 cut(s)	330, 628
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	6 cut(s)	73, 83, 412, 424, 675, 802
BmuI	ACTGGG	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	896, 928
BpmI	CTGGAG	3 cut(s)	89, 689, 898
Bpu10I	CCTNAGC	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	34, 138, 256
BsaWI	WCCGGW	2 cut(s)	454, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 181, 398, 808
Bse1I	ACTGG	3 cut(s)	111, 200, 706
Bse8I	GATNNNNATC	1 cut(s)	265
BseAI	TCCGGA	2 cut(s)	454, 589
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	34, 138, 256
BseGI	GGATG	2 cut(s)	817, 913
BseJI	GATNNNNATC	1 cut(s)	265
BseLI	CCNNNNNNNGG	4 cut(s)	107, 181, 398, 808
BseMII	CTCAG	5 cut(s)	227, 306, 474, 627, 893
BseNI	ACTGG	3 cut(s)	111, 200, 706
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	2 cut(s)	235, 331
BsgI	GTGCAG	2 cut(s)	130, 534
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	2 cut(s)	630, 902
BsiSI	CCGG	2 cut(s)	455, 590
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	4 cut(s)	107, 181, 398, 808
BsmAI	GTCTC	1 cut(s)	916
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	133
BsoBI	CYCGRG	2 cut(s)	630, 902
Bsp1286I	GDGCHC	3 cut(s)	235, 331, 468
Bsp13I	TCCGGA	2 cut(s)	454, 589
Bsp143I	GATC	5 cut(s)	88, 159, 260, 266, 700
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	3 cut(s)	175, 325, 470
BspCNI	CTCAG	5 cut(s)	226, 305, 475, 628, 892
BspEI	TCCGGA	2 cut(s)	454, 589
BspLI	GGNNCC	2 cut(s)	330, 628
BspMI	ACCTGC	1 cut(s)	940
BspPI	GGATC	3 cut(s)	268, 274, 708
BspT107I	GGYRCC	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	111, 200, 706
BssECI	CCNNGG	3 cut(s)	34, 138, 256
BssMI	GATC	5 cut(s)	88, 159, 260, 266, 700
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	228, 282
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstC8I	GCNNGC	5 cut(s)	327, 664, 825, 834, 897
BstDEI	CTNAG	5 cut(s)	213, 292, 483, 636, 879
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	817, 913
BstKTI	GATC	5 cut(s)	91, 162, 263, 269, 703
BstMAI	GTCTC	1 cut(s)	916
BstMBI	GATC	5 cut(s)	88, 159, 260, 266, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 829, 833
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	297, 657
BstSLI	GKGCMC	2 cut(s)	235, 331
BstX2I	RGATCY	3 cut(s)	159, 260, 700
BstYI	RGATCY	3 cut(s)	159, 260, 700
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	817, 913
BtsIMutI	CAGTG	2 cut(s)	193, 233
BveI	ACCTGC	1 cut(s)	940
Cac8I	GCNNGC	5 cut(s)	327, 664, 825, 834, 897
CviAII	CATG	2 cut(s)	35, 59
DdeI	CTNAG	5 cut(s)	213, 292, 483, 636, 879
DpnI	GATC	5 cut(s)	90, 161, 262, 268, 702
DpnII	GATC	5 cut(s)	88, 159, 260, 266, 700
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	2 cut(s)	66, 108
Eco88I	CYCGRG	2 cut(s)	630, 902
EcoICRI	GAGCTC	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	38, 62
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	2 cut(s)	34, 58
FauI	CCCGC	2 cut(s)	318, 477
FblI	GTMKAC	1 cut(s)	869
FokI	GGATG	2 cut(s)	824, 920
FriOI	GRGCYC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	318, 884
GsuI	CTGGAG	3 cut(s)	89, 689, 898
HapII	CCGG	2 cut(s)	455, 590
Hin1II	CATG	2 cut(s)	38, 62
HinfI	GANTC	4 cut(s)	119, 360, 593, 741
HpaII	CCGG	2 cut(s)	455, 590
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	870
Hpy188I	TCNGA	4 cut(s)	85, 127, 139, 484
Hpy188III	TCNNGA	6 cut(s)	68, 264, 419, 455, 590, 755
Hpy8I	GTNNAC	1 cut(s)	870
HpyAV	CCTTC	3 cut(s)	18, 531, 617
HpyCH4III	ACNGT	2 cut(s)	228, 282
HpyCH4V	TGCA	7 cut(s)	147, 224, 349, 425, 515, 613, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 829, 833
HpyF3I	CTNAG	5 cut(s)	213, 292, 483, 636, 879
Hsp92II	CATG	2 cut(s)	38, 62
Kpn2I	TCCGGA	2 cut(s)	454, 589
Kzo9I	GATC	5 cut(s)	88, 159, 260, 266, 700
LmnI	GCTCC	3 cut(s)	412, 463, 471
LweI	GCATC	6 cut(s)	73, 83, 412, 424, 675, 802
MaeI	CTAG	2 cut(s)	318, 884
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	5 cut(s)	90, 161, 262, 268, 702
MboI	GATC	5 cut(s)	88, 159, 260, 266, 700
MboII	GAAGA	3 cut(s)	114, 770, 773
MflI	RGATCY	3 cut(s)	159, 260, 700
MhlI	GDGCHC	3 cut(s)	235, 331, 468
MluCI	AATT	3 cut(s)	339, 434, 735
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	678
MroI	TCCGGA	2 cut(s)	454, 589
MseI	TTAA	4 cut(s)	93, 164, 477, 921
MslI	CAYNNNNRTG	2 cut(s)	39, 420
MspI	CCGG	2 cut(s)	455, 590
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	230, 829, 833
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	5 cut(s)	88, 159, 260, 266, 700
NlaIII	CATG	2 cut(s)	38, 62
NlaIV	GGNNCC	2 cut(s)	330, 628
NmeAIII	GCCGAG	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	902
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	119, 593, 741
PflMI	CCANNNNNTGG	1 cut(s)	808
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	330, 628
PspXI	VCTCGAGB	1 cut(s)	902
PsrI	GAACNNNNNNTAC	2 cut(s)	833, 865
PsuI	RGATCY	3 cut(s)	159, 260, 700
RseI	CAYNNNNRTG	2 cut(s)	39, 420
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	4 cut(s)	93, 164, 477, 921
Sau3AI	GATC	5 cut(s)	88, 159, 260, 266, 700
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	3 cut(s)	235, 331, 468
SfaNI	GCATC	6 cut(s)	73, 83, 412, 424, 675, 802
SfcI	CTRYAG	2 cut(s)	297, 657
Sfr274I	CTCGAG	1 cut(s)	902
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	2 cut(s)	39, 420
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	3 cut(s)	339, 434, 735
SsiI	CCGC	3 cut(s)	175, 325, 470
SspI	AATATT	2 cut(s)	250, 673
SspMI	CTAG	2 cut(s)	318, 884
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	228, 282
TaqI	TCGA	3 cut(s)	524, 739, 903
TasI	AATT	3 cut(s)	339, 434, 735
TfiI	GAWTC	3 cut(s)	119, 593, 741
Tru1I	TTAA	4 cut(s)	93, 164, 477, 921
Tru9I	TTAA	4 cut(s)	93, 164, 477, 921
TscAI	CASTG	2 cut(s)	200, 233
TspDTI	ATGAA	4 cut(s)	132, 666, 780, 878
TspRI	CASTG	2 cut(s)	200, 233
Van91I	CCANNNNNTGG	1 cut(s)	808
XapI	RAATTY	1 cut(s)	735
XhoI	CTCGAG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	869
XspI	CTAG	2 cut(s)	318, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.