Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016841.1

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Forward (+)

7518 .. 14904

Gene Structure 7387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016841.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggagattagagtaggtgaagggtgcagatcacgacgaattcagggaggagattgctgggatgcactaaaacaattatggaggttggcttatccggatagggagctcccacctcttaaatctgagctttggaaagatatgggttggcaaggtgcagacccttcaacagattttagaggtggagggtttatatcattggagaaccttatcttttttgcccaacaatatccggaatcattccatagactgttgcacaaacaagatggaacccgagctgaatgggaatatcctttcgctgtagctggaatcaatatttcatttgtcttggcacaaatgttggatcttcaatcagcaaagccaacttcgttggcaggaatccgattcctacaactgctccaagaagacgaaatggcatttgataacctatattgtgtaaccttccaaatgatggatgctcaatggcttgcgaagcgtgcttcgtatatggagttcaatgatgttatgaagtctacaacaactcagctagagcgtgagcttgccctcgaagatgtcaccagcgttaaagatttaccagcatacaatctattggcaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

198

Amino Acids

22.8

Weight (kDa)

4.93

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	509
AccIII	TCCGGA	2 cut(s)	94, 229
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	165, 347, 493
AluBI	AGCT	6 cut(s)	106, 127, 275, 302, 523, 535
AluI	AGCT	6 cut(s)	106, 127, 275, 302, 523, 535
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	348
Ama87I	CYCGRG	1 cut(s)	270
Aor13HI	TCCGGA	2 cut(s)	94, 229
ApoI	RAATTY	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	29, 544
AvaI	CYCGRG	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	2 cut(s)	257, 442
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	2 cut(s)	52, 442
BpiI	GAAGAC	1 cut(s)	408
BsaWI	WCCGGW	2 cut(s)	94, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
BseAI	TCCGGA	2 cut(s)	94, 229
BseGI	GGATG	2 cut(s)	67, 457
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	114, 533
BseRI	GAGGAG	1 cut(s)	63
BseYI	CCCAGC	1 cut(s)	57
BsgI	GTGCAG	2 cut(s)	46, 174
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	95, 230
BslI	CCNNNNNNNGG	1 cut(s)	448
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp13I	TCCGGA	2 cut(s)	94, 229
Bsp143I	GATC	2 cut(s)	29, 340
BspCNI	CTCAG	2 cut(s)	115, 532
BspEI	TCCGGA	2 cut(s)	94, 229
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	348
BssMI	GATC	2 cut(s)	29, 340
Bst4CI	ACNGT	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	465, 474, 537
BstDEI	CTNAG	2 cut(s)	123, 519
BstF5I	GGATG	2 cut(s)	67, 457
BstKTI	GATC	2 cut(s)	32, 343
BstMBI	GATC	2 cut(s)	29, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 473
BstSFI	CTRYAG	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	67, 457
Cac8I	GCNNGC	3 cut(s)	465, 474, 537
CviJI	RGCY	9 cut(s)	89, 106, 127, 275, 302, 358, 463, 523, 535
CviKI_1	RGCY	9 cut(s)	89, 106, 127, 275, 302, 358, 463, 523, 535
DdeI	CTNAG	2 cut(s)	123, 519
DpnI	GATC	2 cut(s)	31, 342
DpnII	GATC	2 cut(s)	29, 340
Ecl136II	GAGCTC	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	108
FaiI	YATR	9 cut(s)	79, 140, 191, 243, 427, 483, 485, 503, 577
FblI	GTMKAC	1 cut(s)	509
FokI	GGATG	2 cut(s)	74, 464
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	524
GsaI	CCCAGC	1 cut(s)	61
HapII	CCGG	2 cut(s)	95, 230
HinfI	GANTC	4 cut(s)	233, 306, 375, 381
HpaII	CCGG	2 cut(s)	95, 230
HphI	GGTGA	2 cut(s)	29, 544
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	2 cut(s)	124, 380
Hpy188III	TCNNGA	3 cut(s)	33, 95, 230
Hpy8I	GTNNAC	1 cut(s)	510
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	14, 171, 448
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	27, 65, 155, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 473
HpyF3I	CTNAG	2 cut(s)	123, 519
Kpn2I	TCCGGA	2 cut(s)	94, 229
Kzo9I	GATC	2 cut(s)	29, 340
LmnI	GCTCC	3 cut(s)	103, 111, 399
LpnPI	CCDG	8 cut(s)	29, 43, 108, 243, 288, 357, 568, 585
LweI	GCATC	2 cut(s)	52, 442
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	2 cut(s)	433, 550
MalI	GATC	2 cut(s)	31, 342
MboI	GATC	2 cut(s)	29, 340
MboII	GAAGA	3 cut(s)	335, 413, 557
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	39, 74
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	41, 75, 123, 170, 176, 551
MroI	TCCGGA	2 cut(s)	94, 229
MseI	TTAA	2 cut(s)	117, 561
MspI	CCGG	2 cut(s)	95, 230
MwoI	GCNNNNNNNGC	2 cut(s)	469, 473
NdeII	GATC	2 cut(s)	29, 340
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	550
PfeI	GAWTC	4 cut(s)	233, 306, 375, 381
PflMI	CCANNNNNTGG	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	268
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PsuI	RGATCY	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	117, 561
Sau3AI	GATC	2 cut(s)	29, 340
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	2 cut(s)	52, 442
SfcI	CTRYAG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	39, 74
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	524
SstI	GAGCTC	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	543
TasI	AATT	2 cut(s)	39, 74
TfiI	GAWTC	4 cut(s)	233, 306, 375, 381
Tru1I	TTAA	2 cut(s)	117, 561
Tru9I	TTAA	2 cut(s)	117, 561
TseFI	GTSAC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	306, 518
Van91I	CCANNNNNTGG	1 cut(s)	448
XapI	RAATTY	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.