Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Forward (+)

4230672 .. 4236296

Gene Structure 5625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G026000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGAAGCGTCATGGCTTCAAGAACTTTGCGGAAAAGGCTTCATCATGGGGATGTTGATGGGAAAAAGAATGAGCATTTAGAGACATCAGGGTCAGATGATCTTAATGAGCCTCTACTGGGGAATTATTATTCAGATACGCATGCTGAGGGATCCTCACTTGAAGAGACGTGCGATGATGAACGGAGAAAGGAACACCTCCATTGGACCCTTCTGTTTTCTCAGTTGATTGCACAGTGGGCACGGTGGTTAGCAAATATTGTTCTTGGATCGGGATCGCTTATTGGGCGGCTTTTGACCTTCCCTTCAACTACACAAAATGGACAAAGAACTAAGTTGCGTGCACCACCCCTTAGTCCTCTGCAAGAAGCAAGACTCAGAAAGCTGCGACAAAGGCTTGAAGTACCCTTTGATGGCTCTCGTGTGGAGCATCAAGATGCACTTTTACAGTTATGGAGGTTGGCTTATCCGGATAAGGAGCTCCCACCTCTTAAATCAGAGCTTTGGAAACAGATGGGATGGCAAGGTTCAGACCCTTCAACAGACTTTAGAGGCGGGGGATTTATATCATTGGAGAATCTTATATTCTTCGCACAACAGTATCCGGAATCATTCCAAAGATTGTTGCACAAACAAGATGGAACTAGAGCTGAGTGGGAATATCCCTTTGCTGTAGCTGGTATCAATATTTCTTTTGTCTTGGCACAAATGTTGGATCTTCAATCAGCAGAGCCAGCTAGTTTGGCAGGCACCCGTTTTCTCGAACTGCTTCAAGAAGATGAAATGGCATTTGATAACCTTTATTGTGTAGCCTTCCAGATGATGGATGCTCAATGGCTTGCAAAACGTGCTTCCTATATGGAGTTCAATGATGTTCTGAAGTCTACAAGAAGTCAGCTAGAGCGTGAGCTTGCACTTGAAGATGTCTCAAGTGTAAAAGATTTGCCAGCATACAATATGTTGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

324

Amino Acids

37.05

Weight (kDa)

5.58

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	749
AccB7I	CCANNNNNTGG	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	884
AccIII	TCCGGA	2 cut(s)	469, 604
AciI	CCGC	3 cut(s)	31, 289, 555
AclWI	GGATC	5 cut(s)	147, 160, 277, 283, 723
AcuI	CTGAAG	1 cut(s)	899
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	119, 413, 823
AgsI	TTSAA	9 cut(s)	21, 164, 309, 401, 540, 722, 773, 868, 920
AjiI	CACGTC	1 cut(s)	171
AluBI	AGCT	8 cut(s)	385, 481, 502, 650, 677, 737, 898, 910
AluI	AGCT	8 cut(s)	385, 481, 502, 650, 677, 737, 898, 910
Alw21I	GWGCWC	2 cut(s)	346, 483
Alw26I	GTCTC	3 cut(s)	77, 161, 931
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	5 cut(s)	147, 160, 277, 283, 723
Aor13HI	TCCGGA	2 cut(s)	469, 604
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	768
AspS9I	GGNCC	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	2 cut(s)	244, 346
BaeI	ACNNNNGTAYC	2 cut(s)	584, 617
BamHI	GGATCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	346, 483
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	6 cut(s)	53, 407, 508, 513, 632, 817
BciVI	GTATCC	1 cut(s)	612
BcoDI	GTCTC	3 cut(s)	77, 161, 931
BfaI	CTAG	3 cut(s)	645, 738, 899
BfmI	CTRYAG	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	612
BisI	GCNGC	2 cut(s)	290, 386
BlsI	GCNGC	2 cut(s)	291, 387
Bme18I	GGWCC	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	154, 209, 751
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	427, 439, 817
BmuI	ACTGGG	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	913
BsaBI	GATNNNNATC	2 cut(s)	274, 565
BsaWI	WCCGGW	2 cut(s)	469, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 413, 823
Bse1I	ACTGG	1 cut(s)	123
Bse8I	GATNNNNATC	2 cut(s)	274, 565
BseAI	TCCGGA	2 cut(s)	469, 604
BseGI	GGATG	3 cut(s)	58, 524, 832
BseJI	GATNNNNATC	2 cut(s)	274, 565
BseLI	CCNNNNNNNGG	3 cut(s)	119, 413, 823
BseMII	CTCAG	4 cut(s)	138, 236, 391, 642
BseNI	ACTGG	1 cut(s)	123
BseSI	GKGCMC	2 cut(s)	244, 346
BseXI	GCAGC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	749
BsiHKAI	GWGCWC	2 cut(s)	346, 483
BsiSI	CCGG	2 cut(s)	470, 605
BslI	CCNNNNNNNGG	3 cut(s)	119, 413, 823
BsmAI	GTCTC	3 cut(s)	77, 161, 931
BsmBI	CGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	3 cut(s)	244, 346, 483
Bsp13I	TCCGGA	2 cut(s)	469, 604
Bsp143I	GATC	5 cut(s)	100, 152, 269, 275, 715
BspACI	CCGC	3 cut(s)	31, 289, 555
BspCNI	CTCAG	4 cut(s)	139, 235, 390, 643
BspEI	TCCGGA	2 cut(s)	469, 604
BspLI	GGNNCC	3 cut(s)	154, 209, 751
BspPI	GGATC	5 cut(s)	147, 160, 277, 283, 723
BspT107I	GGYRCC	1 cut(s)	749
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	5 cut(s)	100, 152, 269, 275, 715
BssSI	CACGAG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	420
Bst4CI	ACNGT	4 cut(s)	237, 246, 450, 600
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	7 cut(s)	144, 342, 735, 748, 840, 912, 948
BstDEI	CTNAG	6 cut(s)	147, 222, 333, 353, 377, 651
BstF5I	GGATG	3 cut(s)	58, 524, 832
BstKTI	GATC	5 cut(s)	103, 155, 272, 278, 718
BstMAI	GTCTC	3 cut(s)	77, 161, 931
BstMBI	GATC	5 cut(s)	100, 152, 269, 275, 715
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 239, 286, 394, 734, 743, 848
BstNSI	RCATGY	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	2 cut(s)	244, 346
BstV1I	GCAGC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	152, 715
BstYI	RGATCY	2 cut(s)	152, 715
BsuI	GTATCC	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	58, 524, 832
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	7 cut(s)	144, 342, 735, 748, 840, 912, 948
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	3 cut(s)	13, 47, 143
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	6 cut(s)	147, 222, 333, 353, 377, 651
DpnI	GATC	5 cut(s)	102, 154, 271, 277, 717
DpnII	GATC	5 cut(s)	100, 152, 269, 275, 715
DrdI	GACNNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	899
EcoICRI	GAGCTC	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	3 cut(s)	16, 50, 146
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	3 cut(s)	12, 46, 142
FauI	CCCGC	1 cut(s)	548
FblI	GTMKAC	1 cut(s)	884
Fnu4HI	GCNGC	2 cut(s)	290, 386
FokI	GGATG	3 cut(s)	65, 531, 839
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	2 cut(s)	290, 386
FspBI	CTAG	3 cut(s)	645, 738, 899
GluI	GCNGC	2 cut(s)	290, 386
HapII	CCGG	2 cut(s)	470, 605
Hin1II	CATG	3 cut(s)	16, 50, 146
HinfI	GANTC	3 cut(s)	375, 577, 608
HpaII	CCGG	2 cut(s)	470, 605
Hpy166II	GTNNAC	2 cut(s)	344, 885
Hpy188I	TCNGA	6 cut(s)	97, 136, 380, 499, 532, 879
Hpy188III	TCNNGA	8 cut(s)	21, 273, 434, 470, 605, 761, 773, 817
Hpy8I	GTNNAC	2 cut(s)	344, 885
HpyAV	CCTTC	5 cut(s)	221, 310, 315, 546, 823
HpyCH4III	ACNGT	4 cut(s)	237, 246, 450, 600
HpyCH4IV	ACGT	2 cut(s)	170, 847
HpyCH4V	TGCA	7 cut(s)	233, 344, 364, 440, 628, 842, 914
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 239, 286, 394, 734, 743, 848
HpyF3I	CTNAG	6 cut(s)	147, 222, 333, 353, 377, 651
HpySE526I	ACGT	2 cut(s)	170, 847
Hsp92II	CATG	3 cut(s)	16, 50, 146
Kpn2I	TCCGGA	2 cut(s)	469, 604
Kzo9I	GATC	5 cut(s)	100, 152, 269, 275, 715
LmnI	GCTCC	3 cut(s)	427, 478, 486
LpnPI	CCDG	9 cut(s)	75, 104, 483, 618, 663, 732, 747, 830, 960
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	3 cut(s)	427, 439, 817
MaeI	CTAG	3 cut(s)	645, 738, 899
MaeII	ACGT	2 cut(s)	170, 847
MalI	GATC	5 cut(s)	102, 154, 271, 277, 717
MboI	GATC	5 cut(s)	100, 152, 269, 275, 715
MboII	GAAGA	5 cut(s)	176, 580, 710, 788, 932
MflI	RGATCY	2 cut(s)	152, 715
MhlI	GDGCHC	3 cut(s)	244, 346, 483
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	8 cut(s)	123, 142, 166, 209, 369, 450, 498, 545
MroI	TCCGGA	2 cut(s)	469, 604
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	2 cut(s)	105, 492
MslI	CAYNNNNRTG	2 cut(s)	51, 435
MspI	CCGG	2 cut(s)	470, 605
MwoI	GCNNNNNNNGC	7 cut(s)	37, 239, 286, 394, 734, 743, 848
NdeII	GATC	5 cut(s)	100, 152, 269, 275, 715
NlaIII	CATG	3 cut(s)	16, 50, 146
NlaIV	GGNNCC	3 cut(s)	154, 209, 751
NspI	RCATGY	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	2 cut(s)	577, 608
PflMI	CCANNNNNTGG	1 cut(s)	823
PkrI	GCNGC	2 cut(s)	291, 387
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	154, 209, 751
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	152, 715
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	2 cut(s)	51, 435
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	105, 492
SatI	GCNGC	2 cut(s)	290, 386
Sau3AI	GATC	5 cut(s)	100, 152, 269, 275, 715
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	369
SduI	GDGCHC	3 cut(s)	244, 346, 483
SfaNI	GCATC	3 cut(s)	427, 439, 817
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	2 cut(s)	51, 435
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	3 cut(s)	31, 289, 555
SspI	AATATT	2 cut(s)	259, 688
SspMI	CTAG	3 cut(s)	645, 738, 899
SstI	GAGCTC	1 cut(s)	483
TaaI	ACNGT	4 cut(s)	237, 246, 450, 600
TaiI	ACGT	2 cut(s)	173, 850
TaqI	TCGA	1 cut(s)	762
TasI	AATT	1 cut(s)	124
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	577, 608
Tru1I	TTAA	2 cut(s)	105, 492
Tru9I	TTAA	2 cut(s)	105, 492
TscAI	CASTG	1 cut(s)	242
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	32, 195, 795
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	823
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	3 cut(s)	645, 738, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.