Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016841.1

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1692

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016841.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

attaagtcattcggagagaaaaaggagttgaaacttgaaagctattcgattgtcagcacagaaaagctattcactattttcaggggatcattgccagagctacggctggtaaaagagacggtgatgacatctaagactttgcggagaaggcttcatcatggagatgttgatggaaaagcgcacgagcatttggaggcatcagcttcagaagatggtcttaatgagcctctcctcggaaactacgaaagttcagagaggcattcggaggaatccgcacttgcggacctctggaatgatgagcggagaatggaacaactccactggactttattgttttctcagttgattgcgcagtgggcacgatggttaggtatacatcctttttattgtcaagagatctttcagttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

136

Amino Acids

15.91

Weight (kDa)

5.8

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	4 cut(s)	142, 273, 281, 301
AclWI	GGATC	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	31, 38
AluBI	AGCT	4 cut(s)	42, 67, 100, 203
AluI	AGCT	4 cut(s)	42, 67, 100, 203
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	181, 352
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	361
BauI	CACGAG	1 cut(s)	182
BccI	CCATC	3 cut(s)	164, 206, 357
BceAI	ACGGC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	86, 396
BspACI	CCGC	4 cut(s)	142, 273, 281, 301
BspCNI	CTCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	86, 396
BssNAI	GTATAC	1 cut(s)	374
BssSI	CACGAG	1 cut(s)	182
Bst1107I	GTATAC	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	132, 339
BstF5I	GGATG	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	181, 352
BstKTI	GATC	2 cut(s)	89, 399
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	86, 396
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 356
BstSLI	GKGCMC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BstZ17I	GTATAC	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	319, 359
CfoI	GCGC	2 cut(s)	181, 352
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	7 cut(s)	42, 67, 100, 106, 151, 203, 226
CviKI_1	RGCY	7 cut(s)	42, 67, 100, 106, 151, 203, 226
DdeI	CTNAG	2 cut(s)	132, 339
DpnI	GATC	2 cut(s)	88, 398
DpnII	GATC	2 cut(s)	86, 396
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	159, 374
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	373
FokI	GGATG	1 cut(s)	363
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	2 cut(s)	180, 351
HhaI	GCGC	2 cut(s)	181, 352
Hin1II	CATG	1 cut(s)	161
Hin6I	GCGC	2 cut(s)	179, 350
HinP1I	GCGC	2 cut(s)	179, 350
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	5 cut(s)	14, 208, 236, 253, 265
Hpy188III	TCNNGA	2 cut(s)	289, 392
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 356
HpyF3I	CTNAG	2 cut(s)	132, 339
Hsp92II	CATG	1 cut(s)	161
HspAI	GCGC	2 cut(s)	179, 350
Kzo9I	GATC	2 cut(s)	86, 396
LpnPI	CCDG	5 cut(s)	67, 92, 108, 274, 307
LweI	GCATC	1 cut(s)	206
MalI	GATC	2 cut(s)	88, 398
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	2 cut(s)	86, 396
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	361
MnlI	CCTC	6 cut(s)	187, 237, 242, 249, 259, 296
MseI	TTAA	2 cut(s)	3, 219
MslI	CAYNNNNRTG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	148, 356
NdeII	GATC	2 cut(s)	86, 396
NlaIII	CATG	1 cut(s)	161
NsbI	TGCGCA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	3, 219
Sau3AI	GATC	2 cut(s)	86, 396
Sau96I	GGNCC	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	6 cut(s)	44, 69, 102, 205, 288, 373
SfaNI	GCATC	1 cut(s)	206
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	162
SsiI	CCGC	4 cut(s)	142, 273, 281, 301
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	3, 219
Tru9I	TTAA	2 cut(s)	3, 219
TscAI	CASTG	2 cut(s)	326, 359
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	2 cut(s)	326, 359
VpaK11BI	GGWCC	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.