Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Reverse (-)

1147428 .. 1152586

Gene Structure 5159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1012400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGTCGGCAACTTTGAGGAAAAGGTTTCATCATGGGGATGTGGATGGGAAAAAGATGGAGCATTTGGAGACGTCGGAGTCAGATGAACTTAATGTGCCTCTACTGGGAAATTATTCAGATAGGCGTGCAGAGGAAACGACGCTTGAAGAGATCTGGGATGATGAGCGGAGAAAGGAACACCTCCATTGGACCCTTCTGTTTTCTCAGTTGATTGCGCAGTGGGCACGGTGGTTAGCAAATATTGTTCTTGGATCTGGATCACTTATTGGTCGGCTTTTGACCTTCTCTTCAACTACACAAAATGGAGAAAGTGCTAAGTTGTTTGCTCCTCCTCTTAGTCCTCTGCAAGAAGCAAGACTCAGATATCTACGACAAAGGCTTCAAGTACCCTTTGATGGTTCTCGTGTGGAGCATCAAGATGCGCTCTTACAGTTATGGAGGTTGGCTTATCCGGATAAGGAGCTCCCACCTCTTAAATCAGACCTTTGGAAACAGATGGGTTGGCAAGGTTCAGACCCTTCAACAGATTTTAGAGGTGGGGGATTTATATCATTGGAGAATCTTATCTTTTTTGCCCAGCAGTATCCGGAATCATTCCAGAGATTGTTGCACAAACAAGATGGAACTAGAGCTGACTGGGAATATCCCTTTGCTGTAGCTGGCATCAATATTTCTTTTGTCTTGGCACAAATGTTGGATCTTCAATCAGCAAAGCCAACTACTTTGGCTGGAATCCGTTTTCTCGAACTGCTTGAAGAAGATGAGATGGCATTTGACAAACTTTATTGTGTAGCCTTCCAGATGATGGATGCTCAATGGCTCGCAAAGCGTGCTTCTTATATGGACTTCAACGATGTTATGAAGTCTACAACAAGTCAGTTGGAACGCGAGCTTGCACTCGAGGATGTCTCCAGTGTAAAGGATTTACCAGCATACAATCTGTTGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

319

Amino Acids

36.69

Weight (kDa)

5.29

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	123 - 288	3.1e-53	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	79
AatII	GACGTC	1 cut(s)	77
Acc16I	TGCGCA	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	869
AccII	CGCG	1 cut(s)	891
AccIII	TCCGGA	2 cut(s)	454, 589
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	3 cut(s)	262, 268, 708
AcyI	GRCGYC	2 cut(s)	5, 74
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	107, 398, 808
AgsI	TTSAA	7 cut(s)	149, 294, 386, 525, 707, 758, 853
AluBI	AGCT	4 cut(s)	466, 635, 662, 895
AluI	AGCT	4 cut(s)	466, 635, 662, 895
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	65, 916
AlwI	GGATC	3 cut(s)	262, 268, 708
Ama87I	CYCGRG	1 cut(s)	902
Aor13HI	TCCGGA	2 cut(s)	454, 589
Asp700I	GAANNNNTTC	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	220, 427
AspS9I	GGNCC	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	902
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	468
BauI	CACGAG	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	468
BccI	CCATC	7 cut(s)	41, 52, 392, 493, 617, 763, 802
BciVI	GTATCC	1 cut(s)	597
BcoDI	GTCTC	2 cut(s)	65, 916
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	657
BfuI	GTATCC	1 cut(s)	597
BglII	AGATCT	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	902
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	194
BmrI	ACTGGG	2 cut(s)	116, 649
BmsI	GCATC	4 cut(s)	412, 424, 675, 802
BmuI	ACTGGG	2 cut(s)	116, 649
BplI	GAGNNNNNCTC	2 cut(s)	896, 928
BpmI	CTGGAG	1 cut(s)	898
BsaBI	GATNNNNATC	2 cut(s)	259, 550
BsaHI	GRCGYC	2 cut(s)	5, 74
BsaWI	WCCGGW	2 cut(s)	454, 589
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 398, 808
Bse1I	ACTGG	3 cut(s)	111, 644, 915
Bse8I	GATNNNNATC	2 cut(s)	259, 550
BseAI	TCCGGA	2 cut(s)	454, 589
BseGI	GGATG	5 cut(s)	46, 52, 166, 817, 913
BseJI	GATNNNNATC	2 cut(s)	259, 550
BseLI	CCNNNNNNNGG	3 cut(s)	107, 398, 808
BseMII	CTCAG	2 cut(s)	221, 376
BseNI	ACTGG	3 cut(s)	111, 644, 915
BseRI	GAGGAG	2 cut(s)	321, 324
BseSI	GKGCMC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	891
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	902
BsiSI	CCGG	2 cut(s)	455, 590
BslI	CCNNNNNNNGG	3 cut(s)	107, 398, 808
BsmAI	GTCTC	2 cut(s)	65, 916
BsmBI	CGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	902
Bsp1286I	GDGCHC	2 cut(s)	229, 468
Bsp13I	TCCGGA	2 cut(s)	454, 589
Bsp143I	GATC	4 cut(s)	153, 254, 260, 700
BspACI	CCGC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	220, 375
BspEI	TCCGGA	2 cut(s)	454, 589
BspFNI	CGCG	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	3 cut(s)	262, 268, 708
BsrBI	CCGCTC	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	111, 644, 915
BssMI	GATC	4 cut(s)	153, 254, 260, 700
BssNI	GRCGYC	2 cut(s)	5, 74
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	231, 435
Bst6I	CTCTTC	2 cut(s)	144, 295
BstACI	GRCGYC	2 cut(s)	5, 74
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstC8I	GCNNGC	6 cut(s)	129, 664, 825, 834, 893, 897
BstDEI	CTNAG	4 cut(s)	207, 318, 338, 362
BstF5I	GGATG	5 cut(s)	46, 52, 166, 817, 913
BstFNI	CGCG	1 cut(s)	891
BstHHI	GCGC	2 cut(s)	220, 427
BstKTI	GATC	4 cut(s)	156, 257, 263, 703
BstMAI	GTCTC	2 cut(s)	65, 916
BstMBI	GATC	4 cut(s)	153, 254, 260, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 829, 833
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	891
BstX2I	RGATCY	3 cut(s)	153, 254, 700
BstYI	RGATCY	3 cut(s)	153, 254, 700
BsuI	GTATCC	1 cut(s)	597
BtsCI	GGATG	5 cut(s)	46, 52, 166, 817, 913
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	227, 922
Cac8I	GCNNGC	6 cut(s)	129, 664, 825, 834, 893, 897
CfoI	GCGC	2 cut(s)	220, 427
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	1 cut(s)	35
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	4 cut(s)	207, 318, 338, 362
DpnI	GATC	4 cut(s)	155, 256, 262, 702
DpnII	GATC	4 cut(s)	153, 254, 260, 700
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	144, 295
EarI	CTCTTC	2 cut(s)	144, 295
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	466
Eco88I	CYCGRG	1 cut(s)	902
EcoICRI	GAGCTC	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	1 cut(s)	38
FaiI	YATR	7 cut(s)	36, 439, 551, 843, 845, 863, 937
FatI	CATG	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	869
FokI	GGATG	5 cut(s)	53, 59, 173, 824, 920
FriOI	GRGCYC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	630
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	2 cut(s)	219, 426
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	898
HapII	CCGG	2 cut(s)	455, 590
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	2 cut(s)	220, 427
Hin1I	GRCGYC	2 cut(s)	5, 74
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	2 cut(s)	218, 425
HinP1I	GCGC	2 cut(s)	218, 425
HinfI	GANTC	5 cut(s)	80, 360, 562, 593, 735
HpaII	CCGG	2 cut(s)	455, 590
Hpy166II	GTNNAC	1 cut(s)	870
Hpy188I	TCNGA	6 cut(s)	79, 85, 121, 365, 484, 517
Hpy188III	TCNNGA	7 cut(s)	258, 419, 455, 590, 601, 746, 802
Hpy8I	GTNNAC	1 cut(s)	870
Hpy99I	CGWCG	3 cut(s)	10, 79, 145
HpyAV	CCTTC	4 cut(s)	206, 295, 531, 808
HpyCH4III	ACNGT	2 cut(s)	231, 435
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	4 cut(s)	131, 349, 613, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 829, 833
HpyF3I	CTNAG	4 cut(s)	207, 318, 338, 362
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	2 cut(s)	5, 74
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	2 cut(s)	218, 425
Kpn2I	TCCGGA	2 cut(s)	454, 589
Kzo9I	GATC	4 cut(s)	153, 254, 260, 700
LmnI	GCTCC	5 cut(s)	61, 334, 412, 463, 471
LweI	GCATC	4 cut(s)	412, 424, 675, 802
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	74
MalI	GATC	4 cut(s)	155, 256, 262, 702
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	4 cut(s)	153, 254, 260, 700
MboII	GAAGA	5 cut(s)	161, 282, 695, 770, 773
MflI	RGATCY	3 cut(s)	153, 254, 700
MhlI	GDGCHC	2 cut(s)	229, 468
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	89, 354
MmeI	TCCRAC	3 cut(s)	57, 678, 864
MroI	TCCGGA	2 cut(s)	454, 589
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	2 cut(s)	93, 477
MslI	CAYNNNNRTG	2 cut(s)	39, 420
MspI	CCGG	2 cut(s)	455, 590
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	3 cut(s)	224, 829, 833
NdeII	GATC	4 cut(s)	153, 254, 260, 700
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	194
NsbI	TGCGCA	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	902
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	562, 593, 735
PflMI	CCANNNNNTGG	1 cut(s)	808
PleI	GAGTC	2 cut(s)	88, 354
PpsI	GAGTC	2 cut(s)	88, 354
Psp124BI	GAGCTC	1 cut(s)	468
PspFI	CCCAGC	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	192
PspXI	VCTCGAGB	1 cut(s)	902
PsuI	RGATCY	3 cut(s)	153, 254, 700
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	2 cut(s)	39, 420
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	93, 477
Sau3AI	GATC	4 cut(s)	153, 254, 260, 700
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	2 cut(s)	89, 354
SduI	GDGCHC	2 cut(s)	229, 468
SfaNI	GCATC	4 cut(s)	412, 424, 675, 802
SfcI	CTRYAG	1 cut(s)	657
Sfr274I	CTCGAG	1 cut(s)	902
SinI	GGWCC	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	2 cut(s)	39, 420
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	169
SspI	AATATT	2 cut(s)	244, 673
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	231, 435
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	747, 903
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	3 cut(s)	562, 593, 735
Tru1I	TTAA	2 cut(s)	93, 477
Tru9I	TTAA	2 cut(s)	93, 477
TscAI	CASTG	2 cut(s)	227, 922
TspDTI	ATGAA	3 cut(s)	20, 102, 878
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	2 cut(s)	227, 922
Van91I	CCANNNNNTGG	1 cut(s)	808
VpaK11BI	GGWCC	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	1 cut(s)	630
ZraI	GACGTC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.