Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005163

Physical Location & Seq

Genomic Coordinates Forward (+)

27098965 .. 27099918

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0274200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTGATGTTGGCCTTATTGTTGGGTTGGAGAAAAGCTTCAAAGTGCAAGAAACTACTCAAACAAGTTCGGTCCCGTCTCGAGTGCTTGAAAAACGAGAGGTCTGCTATTTCTACGCAGTTACGGAATGAGCTTGAGAAACTAGACGACGAGGCACTGAACCTCAGGATCGAACAAGAACAACACATGAGAGACGAATCTTCTGTTTTCAATTTCCTCGACCATTTCTGCAACCTCATCCTTAAGCACTCCTTTTATAATTATATTCGAACGCACAAGCAGTGTCGTCAAAACCTAGCTGAAGCAGTTTCAAGTCTTGTCTTTGCTTCTTCAAGATTAAGATGCGGGGTGATTCCAGAGCTTGAGGAGATCAGGAACTTTTTTGGAGAGTGTTACGGGGAGAGTTTTGTAGAAACTACTGTGAAACTGGTGCCTGGGAATCTTGTAAACCCTACTTTCAAAAAGACTATTCTCGCTCTCTTCCCAGACTCAGTGGTGCCCAATGATAGAGTAAAACAAGAACTGGTAAAACCCTCTTTTACTAGTTCTTCTACTGATGAGGCACCAGAAAGATCATCAACAGCAGAGGAAAAGGACGACGAGGATCACAACAATAAACTACAACTTATTACCTCCCAATCTTCTAAACATGTCCACCCCAAATTGCCTGACTGGGATGATATATTTACCAAGTTCAGTGCCCTCAAGAAGCCTATGTACGTCAACCCTAAGTTGCCAGAATATGATGATATTACAGCCAAGTATAATGCTGTCAAGAGCCCTAATAATGAGAACACTGCTGATAATTACCGCTCGCAATTAGAGTACGATGATGAGCTCAATATTGATGACGGAGCAATGTTCAGTTATTCATGGTTGTCGATAGAGAGCATTTTGGCAATGATATACCAGCCCCAATGTGCTAGTGTCATTAACACAATCACCCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

317

Amino Acids

36.5

Weight (kDa)

5.62

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	17 - 157	3.4e-21	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03610 AT3G03610 AT3G03610 AT3G03610
fragaria_vesca	FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390 FvH4_1g29390
malus_domestica	MD12G1014800.v1.1 MD14G1012400.v1.1
prunus_persica	Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1 Prupe.7G026000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495561
rosa_laevigata	RLG00000022609
rosa_multiflora	Rmu_sc0016841.1_g000001 Rmu_sc0016841.1_g000002
rosa_roxburghii	Rroxscaffold_6G00390300
rosa_rugosa	Rorug03G0274200 Rorug03G0274300
rosa_samantha	Rh3AG322000 Rh3BG357100 Rh3CG353900 Rh3DG357200
rosa_wichuraiana	Rw3G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccB1I	GGYRCC	3 cut(s)	430, 496, 562
AccBSI	CCGCTC	1 cut(s)	813
AciI	CCGC	2 cut(s)	345, 811
AclWI	GGATC	2 cut(s)	176, 612
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	719, 827
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	6 cut(s)	42, 91, 211, 312, 333, 460
AhlI	ACTAGT	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	5 cut(s)	38, 133, 299, 361, 838
AluI	AGCT	5 cut(s)	38, 133, 299, 361, 838
Alw21I	GWGCWC	1 cut(s)	840
Alw26I	GTCTC	2 cut(s)	83, 186
AlwI	GGATC	2 cut(s)	176, 612
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	361, 934
AsuII	TTCGAA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	72
AxyI	CCTNAGG	1 cut(s)	164
BaeGI	GKGCMC	2 cut(s)	501, 703
BanI	GGYRCC	3 cut(s)	430, 496, 562
BanII	GRGCYC	2 cut(s)	782, 840
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
Bbv12I	GWGCWC	1 cut(s)	840
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	83, 186
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	4 cut(s)	143, 296, 543, 924
BfrI	CTTAAG	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	4 cut(s)	74, 432, 498, 564
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	682
Bpu14I	TTCGAA	1 cut(s)	268
BpuEI	CTTGAG	3 cut(s)	155, 383, 689
BsaJI	CCNNGG	1 cut(s)	434
Bse1I	ACTGG	3 cut(s)	432, 528, 677
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	864, 906
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	237, 682
BseMI	GCAATG	2 cut(s)	864, 906
BseMII	CTCAG	2 cut(s)	178, 504
BseNI	ACTGG	3 cut(s)	432, 528, 677
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	2 cut(s)	501, 703
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	3 cut(s)	430, 496, 562
BsiHKAI	GWGCWC	1 cut(s)	840
BsiHKCI	CYCGRG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	83, 186
BsmBI	CGTCTC	2 cut(s)	83, 186
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1286I	GDGCHC	4 cut(s)	501, 703, 782, 840
Bsp143I	GATC	4 cut(s)	168, 369, 572, 604
BspACI	CCGC	2 cut(s)	345, 811
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	2 cut(s)	177, 503
BspLI	GGNNCC	4 cut(s)	74, 432, 498, 564
BspPI	GGATC	2 cut(s)	176, 612
BspT104I	TTCGAA	1 cut(s)	268
BspT107I	GGYRCC	3 cut(s)	430, 496, 562
BspTI	CTTAAG	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	813
BsrDI	GCAATG	2 cut(s)	864, 906
BsrI	ACTGG	3 cut(s)	432, 528, 677
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	4 cut(s)	168, 369, 572, 604
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	485
BstAFI	CTTAAG	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	815
BstDEI	CTNAG	3 cut(s)	164, 490, 729
BstF5I	GGATG	2 cut(s)	237, 682
BstKTI	GATC	4 cut(s)	171, 372, 575, 607
BstMAI	GTCTC	2 cut(s)	83, 186
BstMBI	GATC	4 cut(s)	168, 369, 572, 604
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	2 cut(s)	501, 703
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	237, 682
BtsI	GCAGTG	2 cut(s)	287, 795
BtsIMutI	CAGTG	5 cut(s)	155, 287, 498, 703, 795
Cac8I	GCNNGC	1 cut(s)	815
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	718, 826
CviAII	CATG	3 cut(s)	187, 650, 873
CviQI	GTAC	2 cut(s)	718, 826
DdeI	CTNAG	3 cut(s)	164, 490, 729
DpnI	GATC	4 cut(s)	170, 371, 574, 606
DpnII	GATC	4 cut(s)	168, 369, 572, 604
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	838
Eco24I	GRGCYC	2 cut(s)	782, 840
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	782, 840
Esp3I	CGTCTC	2 cut(s)	83, 186
FaeI	CATG	3 cut(s)	190, 653, 876
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	186, 649, 872
FauI	CCCGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	224, 689
FriOI	GRGCYC	2 cut(s)	782, 840
FspBI	CTAG	4 cut(s)	143, 296, 543, 924
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	190, 653, 876
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	4 cut(s)	197, 352, 439, 488
HphI	GGTGA	2 cut(s)	361, 934
Hpy166II	GTNNAC	3 cut(s)	448, 655, 724
Hpy188III	TCNNGA	7 cut(s)	80, 166, 333, 356, 373, 706, 775
Hpy8I	GTNNAC	3 cut(s)	448, 655, 724
Hpy99I	CGWCG	2 cut(s)	152, 602
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	2 cut(s)	48, 231
HpyF3I	CTNAG	3 cut(s)	164, 490, 729
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	3 cut(s)	190, 653, 876
Kzo9I	GATC	4 cut(s)	168, 369, 572, 604
LmnI	GCTCC	1 cut(s)	854
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	4 cut(s)	143, 296, 543, 924
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	2 cut(s)	120, 392
MalI	GATC	4 cut(s)	170, 371, 574, 606
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	4 cut(s)	168, 369, 572, 604
MboII	GAAGA	5 cut(s)	192, 321, 472, 540, 633
MhlI	GDGCHC	4 cut(s)	501, 703, 782, 840
MluCI	AATT	5 cut(s)	211, 259, 662, 805, 818
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	37
MseI	TTAA	3 cut(s)	243, 338, 933
MspCI	CTTAAG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
NdeII	GATC	4 cut(s)	168, 369, 572, 604
NlaIII	CATG	3 cut(s)	190, 653, 876
NlaIV	GGNNCC	4 cut(s)	74, 432, 498, 564
NspI	RCATGY	1 cut(s)	653
NspV	TTCGAA	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	80
PciI	ACATGT	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	197, 352, 439
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PscI	ACATGT	1 cut(s)	649
PsiI	TTATAA	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	74, 432, 498, 564
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	719, 827
RsaNI	GTAC	2 cut(s)	718, 826
SacI	GAGCTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	243, 338, 933
Sau3AI	GATC	4 cut(s)	168, 369, 572, 604
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	4 cut(s)	501, 703, 782, 840
SfaNI	GCATC	1 cut(s)	332
Sfr274I	CTCGAG	1 cut(s)	80
SfuI	TTCGAA	1 cut(s)	268
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	5 cut(s)	80, 134, 242, 362, 704
SmoI	CTYRAG	5 cut(s)	80, 134, 242, 362, 704
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	5 cut(s)	211, 259, 662, 805, 818
SsiI	CCGC	2 cut(s)	345, 811
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	4 cut(s)	143, 296, 543, 924
SstI	GAGCTC	1 cut(s)	840
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	5 cut(s)	81, 171, 219, 268, 881
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	211, 259, 662, 805, 818
TfiI	GAWTC	3 cut(s)	197, 352, 439
Tru1I	TTAA	3 cut(s)	243, 338, 933
Tru9I	TTAA	3 cut(s)	243, 338, 933
TscAI	CASTG	5 cut(s)	162, 287, 498, 703, 802
TspDTI	ATGAA	1 cut(s)	861
TspGWI	ACGGA	2 cut(s)	139, 867
TspRI	CASTG	5 cut(s)	162, 287, 498, 703, 802
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	653
XhoI	CTCGAG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	37
XspI	CTAG	4 cut(s)	143, 296, 543, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.