Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001848

Physical Location & Seq

Genomic Coordinates Reverse (-)

27108560 .. 27112059

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0274300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAAGGACAAAGGGCTGGTTTGGTTGGGTGAAGAGGCTCTTTACTCCAGAATTAAAGACAAACACGAAAAAGATATCAAACAAGTGGAGATGGATTTTTGGAAGACTTGAACTTCAGCACTACCCTTCTCACGCTGTGCTTACAGCATCAGAAAGAGCATTTCGTGAAGCTACAGAAGAGCAGAAAAAACATGCTTTGACTGTTGCAATAGCAACAGCGGTTGCAGCCAAGGCAGCTGTAGCTGCTGCCCAAGCTGCAGCTGAGGTTGTGCGCCTAACGGGAGCTTCACAATCTTTCCACCATTTCACAAAGTTTGACAGGAACATGGCTGCCATTAAAATTCAAAGTGCTTATCGCTCGCATCTTGCAAGGAAAGCATTGCGAGCCTTGCGAGGACTGGTCAGGCTTCAAGCCATAGTTCGTGGTCGAGCTGTGAGACGTCAAGCACTCATATCTTTGAAGCGGTTGCCATCTAACAGAAAAGCGCAGACAGAGGTTACGAAAAGGAGCATTTCTACCGTAGATGTGAGATGCAACGGTAGCGAAAAGAAGCATCTTGGCAGGCCAAAAGGGGAGTTGGATGAGAAAGAAATAACACTTTTATGCAGCAGCAGACAGATGAGGTGGGATGACAGTCTAATTTCAAAGGAGGACATTGAAGCAATATGGCTAAGAAAGCAAGAGGCCAGAATCAAAAGAGAGCGGATGAAGAAATACTCGTTCTCTCTCCGGGAAAGCCAGAATGTGAAAATGTTAGAAGATTCAAATGGTAGTACTGGTGGAACGTTTGGAACTTCACAAGTTAAACTGAGACATTTGAGAAATGAATATTCAGTGGAAGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

283

Amino Acids

32.31

Weight (kDa)

10.82

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	110 - 129	4.3e-06	IQ calmodulin-binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344671 RchiOBHm_Chr2g0103891 RchiOBHm_Chr2g0125481 RchiOBHm_Chr2g0127991 RchiOBHm_Chr4g0404361 RchiOBHm_Chr6g0293921 RchiOBHm_Chr7g0183991 RchiOBHm_Chr7g0200701 RchiOBHm_Chr7g0203451 RchiOBHm_Chr7g0233851
rosa_laevigata	RLG00000009445
rosa_multiflora	Rmu_sc0001762.1_g000048 Rmu_ssc0000198.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431470 Rroxscaffold_1G00006800 Rroxscaffold_1G00038540 Rroxscaffold_1G00072610 Rroxscaffold_2G00078350 Rroxscaffold_2G00079900 Rroxscaffold_2G00125220 Rroxscaffold_3G00246630 Rroxscaffold_4G00306170 Rroxscaffold_4G00314800 Rroxscaffold_4G00317460 Rroxscaffold_4G00319930 Rroxscaffold_5G00343110 Rroxscaffold_6G00395760 Rroxscaffold_6G00421380 Rroxscaffold_7G00160650
rosa_rugosa	Rorug01G0217800 Rorug03G0274300 Rorug04G0088400 Rorug05G0172900 Rorug07G0221500
rosa_samantha	Rh1BG311700 Rh1DG110800 Rh2AG655300 Rh2BG324100 Rh2BG414100 Rh2DG254900 Rh3DG077200 Rh4BG304400 Rh5DG244400 Rh7BG056200
rosa_wichuraiana	Rw1G008450 Rw2G032850 Rw4G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	706
AciI	CCGC	3 cut(s)	221, 466, 706
AclI	AACGTT	1 cut(s)	788
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	442
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	778
AgsI	TTSAA	7 cut(s)	113, 347, 413, 463, 648, 662, 768
AluBI	AGCT	7 cut(s)	173, 239, 245, 257, 263, 287, 434
AluI	AGCT	7 cut(s)	173, 239, 245, 257, 263, 287, 434
Alw26I	GTCTC	2 cut(s)	433, 808
AoxI	GGCC	2 cut(s)	566, 687
ApeKI	GCWGC	9 cut(s)	227, 236, 245, 248, 257, 260, 332, 609, 612
ApoI	RAATTY	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	276, 490
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	112
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	9 cut(s)	232, 235, 239, 244, 248, 272, 319, 621, 624
BccI	CCATC	2 cut(s)	87, 481
BcnI	CCSGG	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	433, 808
BfmI	CTRYAG	3 cut(s)	174, 240, 258
BisI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 610, 613
BlsI	GCNGC	9 cut(s)	229, 238, 247, 250, 259, 262, 334, 611, 614
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	1 cut(s)	734
BmrFI	CCNGG	1 cut(s)	734
BmsI	GCATC	4 cut(s)	158, 373, 524, 565
BpiI	GAAGAC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	405, 784
Bse3DI	GCAATG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	3 cut(s)	589, 637, 714
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	255, 803
BseNI	ACTGG	2 cut(s)	405, 784
BseXI	GCAGC	9 cut(s)	232, 235, 239, 244, 248, 272, 319, 621, 624
BshFI	GGCC	2 cut(s)	568, 689
BsiSI	CCGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	433, 808
BsmBI	CGTCTC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	568, 689
BspACI	CCGC	3 cut(s)	221, 466, 706
BspANI	GGCC	2 cut(s)	568, 689
BspCNI	CTCAG	2 cut(s)	256, 804
BspMAI	CTGCAG	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	405, 784
BssECI	CCNNGG	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	205, 523, 542, 638
Bst6I	CTCTTC	2 cut(s)	29, 174
BstACI	GRCGYC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	362, 387, 566
BstDEI	CTNAG	3 cut(s)	264, 674, 812
BstF5I	GGATG	3 cut(s)	589, 637, 714
BstHHI	GCGC	2 cut(s)	276, 490
BstMAI	GTCTC	2 cut(s)	433, 808
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	732
BstSFI	CTRYAG	3 cut(s)	174, 240, 258
BstV1I	GCAGC	9 cut(s)	232, 235, 239, 244, 248, 272, 319, 621, 624
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	568, 689
BtsCI	GGATG	3 cut(s)	589, 637, 714
BtsIMutI	CAGTG	1 cut(s)	843
Cac8I	GCNNGC	3 cut(s)	362, 387, 566
CfoI	GCGC	2 cut(s)	276, 490
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	2 cut(s)	194, 328
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	3 cut(s)	264, 674, 812
DraIII	CACNNNGTG	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	29, 174
EarI	CTCTTC	2 cut(s)	29, 174
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	2 cut(s)	197, 331
FaiI	YATR	6 cut(s)	195, 329, 419, 455, 607, 670
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	2 cut(s)	193, 327
Fnu4HI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 610, 613
FokI	GGATG	3 cut(s)	596, 644, 721
Fsp4HI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 610, 613
GlaI	GCGC	2 cut(s)	275, 489
GluI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 610, 613
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	568, 689
HapII	CCGG	1 cut(s)	733
HhaI	GCGC	2 cut(s)	276, 490
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	2 cut(s)	197, 331
Hin6I	GCGC	2 cut(s)	274, 488
HinP1I	GCGC	2 cut(s)	274, 488
HinfI	GANTC	2 cut(s)	693, 764
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	50, 167
HpyAV	CCTTC	2 cut(s)	138, 836
HpyCH4III	ACNGT	4 cut(s)	205, 523, 542, 638
HpyCH4IV	ACGT	2 cut(s)	442, 788
HpyCH4V	TGCA	6 cut(s)	209, 227, 260, 371, 537, 609
HpyF3I	CTNAG	3 cut(s)	264, 674, 812
HpySE526I	ACGT	2 cut(s)	442, 788
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	2 cut(s)	197, 331
HspAI	GCGC	2 cut(s)	274, 488
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	284, 510
Lsp1109I	GCAGC	9 cut(s)	232, 235, 239, 244, 248, 272, 319, 621, 624
LweI	GCATC	4 cut(s)	158, 373, 524, 565
MaeII	ACGT	2 cut(s)	442, 788
MaeIII	GTNAC	1 cut(s)	499
MbiI	CCGCTC	1 cut(s)	706
MboII	GAAGA	5 cut(s)	46, 117, 191, 724, 773
MluCI	AATT	3 cut(s)	53, 342, 642
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	7 cut(s)	30, 259, 389, 490, 618, 646, 679
MseI	TTAA	3 cut(s)	56, 339, 807
MslI	CAYNNNNRTG	1 cut(s)	604
MspA1I	CMGCKG	3 cut(s)	221, 239, 263
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	1 cut(s)	734
NciI	CCSGG	1 cut(s)	734
NlaIII	CATG	2 cut(s)	197, 331
NspI	RCATGY	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	693, 764
PfoI	TCCNGGA	1 cut(s)	732
PkrI	GCNGC	9 cut(s)	229, 238, 247, 250, 259, 262, 334, 611, 614
Psp1406I	AACGTT	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	262
PvuII	CAGCTG	2 cut(s)	239, 263
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	604
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	56, 339, 807
SatI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 610, 613
ScaI	AGTACT	1 cut(s)	778
ScrFI	CCNGG	1 cut(s)	734
SfaNI	GCATC	4 cut(s)	158, 373, 524, 565
SfcI	CTRYAG	3 cut(s)	174, 240, 258
SmiMI	CAYNNNNRTG	1 cut(s)	604
Sse9I	AATT	3 cut(s)	53, 342, 642
SsiI	CCGC	3 cut(s)	221, 466, 706
SspI	AATATT	1 cut(s)	833
StyD4I	CCNGG	1 cut(s)	732
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	4 cut(s)	205, 523, 542, 638
TaiI	ACGT	2 cut(s)	445, 791
TaqI	TCGA	2 cut(s)	430, 847
TasI	AATT	3 cut(s)	53, 342, 642
TatI	WGTACW	1 cut(s)	776
TfiI	GAWTC	2 cut(s)	693, 764
Tru1I	TTAA	3 cut(s)	56, 339, 807
Tru9I	TTAA	3 cut(s)	56, 339, 807
TscAI	CASTG	1 cut(s)	843
TseI	GCWGC	9 cut(s)	227, 236, 245, 248, 257, 260, 332, 609, 612
TspDTI	ATGAA	2 cut(s)	725, 843
TspRI	CASTG	1 cut(s)	843
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	1 cut(s)	197
ZraI	GACGTC	1 cut(s)	443
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.