Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001848

Physical Location & Seq

Genomic Coordinates Forward (+)

87211269 .. 87232799

Gene Structure 21531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG655300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCTCCAAAGATGAGGTGGACAAGAAGTAAGAGATTGTTAGAGGAGTATGAAGATGAAAATCATAAAGCTGAAAGGGAGGTCCAAGAAATATCTAATGACCAGAATGTAATTGGTGGTATATCTAAAACTGGAACCGCAGTTTTTGAACAACCAACTCCATCGAGCACAAATCACAGCTGCATAATCATTGATCCAGACATTGGCCAAAGAGAAGACTACGAGGAAGAATTCTCAAAAGCAGGGGATAAGCGGAAGTTGCTACCAACTCCATCCAAGCAACCACTCCACCAAGAAGCCAAAGATCATGCAAAAAAAACAGTGTCACGGCTCAATACCGTTAATCTGCATGAATACCAGGGTGTTGTGCTTGGATTTCTTTTCAGGGTGTTGTGCTTTGATTTCTTTTCAAATCTACAAGAGGGTGTTGTGCTTGGATTTGTTTTCAGGGTGTTGTGCTTGGATTTCTTTTCAGATATGCAAGAGGGTGTTGTGCTTGGATTTCTTTTCAGGGTGTTACGCTTGGATTTCTTTTCAGATCTGCAAGAGGGTGTTGTGCTTGGATTTCTTTTCAGATCTACAAGAGATAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGCAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCCGATAATACAACATTAGAGGCCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTCATGAAAGTGGTTGCTCGACCAGAATTATCGTTCCACATATGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCACGACGAGATCATGTCTTTGAAAGGTCTGGAACTTGTGAAAGAGCATGCTCAGACTGTTCAGACTGCACCGGAACCTATACACAAGCCTGCCGAGAAAAAATCTGTTAAGCCGAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

317

Amino Acids

36.35

Weight (kDa)

7.16

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344671 RchiOBHm_Chr2g0103891 RchiOBHm_Chr2g0125481 RchiOBHm_Chr2g0127991 RchiOBHm_Chr4g0404361 RchiOBHm_Chr6g0293921 RchiOBHm_Chr7g0183991 RchiOBHm_Chr7g0200701 RchiOBHm_Chr7g0203451 RchiOBHm_Chr7g0233851
rosa_laevigata	RLG00000009445
rosa_multiflora	Rmu_sc0001762.1_g000048 Rmu_ssc0000198.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431470 Rroxscaffold_1G00006800 Rroxscaffold_1G00038540 Rroxscaffold_1G00072610 Rroxscaffold_2G00078350 Rroxscaffold_2G00079900 Rroxscaffold_2G00125220 Rroxscaffold_3G00246630 Rroxscaffold_4G00306170 Rroxscaffold_4G00314800 Rroxscaffold_4G00317460 Rroxscaffold_4G00319930 Rroxscaffold_5G00343110 Rroxscaffold_6G00395760 Rroxscaffold_6G00421380 Rroxscaffold_7G00160650
rosa_rugosa	Rorug01G0217800 Rorug03G0274300 Rorug04G0088400 Rorug05G0172900 Rorug07G0221500
rosa_samantha	Rh1BG311700 Rh1DG110800 Rh2AG655300 Rh2BG324100 Rh2BG414100 Rh2DG254900 Rh3DG077200 Rh4BG304400 Rh5DG244400 Rh7BG056200
rosa_wichuraiana	Rw1G008450 Rw2G032850 Rw4G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	627
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	2 cut(s)	138, 253
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	149, 411, 844
AjnI	CCWGG	1 cut(s)	357
AleI	CACNNNNGTG	1 cut(s)	783
AluBI	AGCT	4 cut(s)	71, 180, 632, 729
AluI	AGCT	4 cut(s)	71, 180, 632, 729
Alw21I	GWGCWC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	2 cut(s)	205, 696
ApeKI	GCWGC	2 cut(s)	180, 629
ApoI	RAATTY	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	2 cut(s)	82, 812
AvaII	GGWCC	2 cut(s)	82, 812
BalI	TGGCCA	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	167, 641
BccI	CCATC	3 cut(s)	169, 280, 718
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	660
BfmI	CTRYAG	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	627
BglI	GCCNNNNNGGC	1 cut(s)	940
BglII	AGATCT	2 cut(s)	538, 575
BisI	GCNGC	2 cut(s)	181, 630
BlsI	GCNGC	2 cut(s)	182, 631
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	82, 812
BmgT120I	GGNCC	2 cut(s)	82, 812
BmiI	GGNNCC	3 cut(s)	6, 136, 897
BmrFI	CCNGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	892
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	272, 706
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	887
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	59, 731
BseXI	GCAGC	2 cut(s)	167, 641
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	2 cut(s)	207, 698
BsiHKAI	GWGCWC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	893
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	2 cut(s)	207, 698
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
BspACI	CCGC	2 cut(s)	138, 253
BspANI	GGCC	2 cut(s)	207, 698
BspCNI	CTCAG	1 cut(s)	886
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	3 cut(s)	6, 136, 897
BspMAI	CTGCAG	1 cut(s)	799
BspMI	ACCTGC	1 cut(s)	627
BspPI	GGATC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	322, 340, 880
BstC8I	GCNNGC	3 cut(s)	634, 870, 912
BstDEI	CTNAG	1 cut(s)	873
BstF5I	GGATG	2 cut(s)	272, 706
BstKTI	GATC	7 cut(s)	196, 307, 541, 578, 663, 739, 834
BstMBI	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 626, 940
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	167, 641
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	538, 575
BstYI	RGATCY	2 cut(s)	538, 575
BsuRI	GGCC	2 cut(s)	207, 698
BtsCI	GGATG	2 cut(s)	272, 706
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	627
Cac8I	GCNNGC	3 cut(s)	634, 870, 912
CciI	TCATGA	1 cut(s)	744
Cfr13I	GGNCC	2 cut(s)	82, 812
CviAII	CATG	5 cut(s)	308, 350, 745, 835, 869
DdeI	CTNAG	1 cut(s)	873
DpnI	GATC	7 cut(s)	195, 306, 540, 577, 662, 738, 833
DpnII	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
EaeI	YGGCCR	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	82, 812
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	5 cut(s)	311, 353, 748, 838, 872
FatI	CATG	5 cut(s)	307, 349, 744, 834, 868
FauNDI	CATATG	1 cut(s)	782
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	181, 630
FokI	GGATG	2 cut(s)	259, 693
Fsp4HI	GCNGC	2 cut(s)	181, 630
GluI	GCNGC	2 cut(s)	181, 630
HaeIII	GGCC	2 cut(s)	207, 698
HapII	CCGG	1 cut(s)	893
Hin1II	CATG	5 cut(s)	311, 353, 748, 838, 872
HpaII	CCGG	1 cut(s)	893
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	7 cut(s)	475, 538, 575, 715, 726, 876, 885
Hpy188III	TCNNGA	6 cut(s)	197, 595, 677, 745, 824, 851
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	830
HpyAV	CCTTC	1 cut(s)	830
HpyCH4III	ACNGT	3 cut(s)	322, 340, 880
HpyCH4V	TGCA	7 cut(s)	183, 311, 349, 481, 544, 797, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 626, 940
HpyF3I	CTNAG	1 cut(s)	873
Hsp92II	CATG	5 cut(s)	311, 353, 748, 838, 872
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	167, 641
MaeIII	GTNAC	2 cut(s)	324, 516
MalI	GATC	7 cut(s)	195, 306, 540, 577, 662, 738, 833
MboI	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
MboII	GAAGA	3 cut(s)	65, 227, 239
MflI	RGATCY	2 cut(s)	538, 575
MhlI	GDGCHC	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	111, 230, 720, 767
MluNI	TGGCCA	1 cut(s)	207
Mox20I	TGGCCA	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	342, 930
MslI	CAYNNNNRTG	2 cut(s)	749, 783
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	1 cut(s)	893
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	259, 626, 940
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
NlaIII	CATG	5 cut(s)	311, 353, 748, 838, 872
NlaIV	GGNNCC	3 cut(s)	6, 136, 897
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	1 cut(s)	324
NspI	RCATGY	1 cut(s)	872
OliI	CACNNNNGTG	1 cut(s)	783
PaeI	GCATGC	1 cut(s)	872
PagI	TCATGA	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	720
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	182, 631
PpuMI	RGGWCCY	1 cut(s)	812
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	6, 136, 897
PspPI	GGNCC	2 cut(s)	82, 812
PspPPI	RGGWCCY	1 cut(s)	812
PstI	CTGCAG	1 cut(s)	799
PsuI	RGATCY	2 cut(s)	538, 575
PvuII	CAGCTG	1 cut(s)	180
RseI	CAYNNNNRTG	2 cut(s)	749, 783
SaqAI	TTAA	2 cut(s)	342, 930
SatI	GCNGC	2 cut(s)	181, 630
Sau3AI	GATC	7 cut(s)	193, 304, 538, 575, 660, 736, 831
Sau96I	GGNCC	2 cut(s)	82, 812
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	82, 812
SmiMI	CAYNNNNRTG	2 cut(s)	749, 783
SphI	GCATGC	1 cut(s)	872
Sse9I	AATT	4 cut(s)	111, 230, 720, 767
SsiI	CCGC	2 cut(s)	138, 253
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	322, 340, 880
TaqI	TCGA	2 cut(s)	164, 760
TasI	AATT	4 cut(s)	111, 230, 720, 767
Tru1I	TTAA	2 cut(s)	342, 930
Tru9I	TTAA	2 cut(s)	342, 930
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	2 cut(s)	180, 629
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	5 cut(s)	66, 72, 366, 695, 761
TspRI	CASTG	1 cut(s)	327
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	82, 812
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	872
XcmI	CCANNNNNNNNNTGG	2 cut(s)	15, 110
XmnI	GAANNNNTTC	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.