RchiOBHm_Chr7g0200701

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
18427401 .. 18430671
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17966

Sequence Viewer

Length: 258 bp
ATGGCTCCAAAGATGAGGTGGACAAGAACAAAAAGATTTTTACAGGACTGTCATGATGAAAATCATAGTAGTCAGAGAGAAGTGCAAGAAATATCAGATCATCAGAATTTGGCTGGTAGTATATCTGAAGCTGAAAATGCTATTTCTGGTAGGGATGAAGAGCATCAAATTCATCCAAGATCAAGGCGTGGTGAGCATCAAATGCATTTTAACTGTTTATCTGTTTACAAATTTAGAATAACTTACGTTGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

10.16

Weight (kDa)

7.06

Isoelectric Point (pI)

66.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 106, 168, 230
AcuI CTGAAG 1 cut(s) 147
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
ApoI RAATTY 3 cut(s) 106, 168, 230
AsuHPI GGTGA 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 172, 205
BsaBI GATNNNNATC 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 60
BseGI GGATG 2 cut(s) 160, 172
BseJI GATNNNNATC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 97, 179
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 6
BspQI GCTCTTC 1 cut(s) 153
BssMI GATC 2 cut(s) 97, 179
Bst4CI ACNGT 2 cut(s) 50, 215
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 202
BstF5I GGATG 2 cut(s) 160, 172
BstKTI GATC 2 cut(s) 100, 182
BstMBI GATC 2 cut(s) 97, 179
BstMWI GCNNNNNNNGC 3 cut(s) 137, 193, 202
BtsCI GGATG 2 cut(s) 160, 172
CciI TCATGA 1 cut(s) 52
CviAII CATG 1 cut(s) 53
CviJI RGCY 3 cut(s) 5, 113, 131
CviKI_1 RGCY 3 cut(s) 5, 113, 131
DpnI GATC 2 cut(s) 99, 181
DpnII GATC 2 cut(s) 97, 179
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 207
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 54, 66, 122
FatI CATG 1 cut(s) 52
FokI GGATG 2 cut(s) 159, 167
Hin1II CATG 1 cut(s) 56
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 21, 226
Hpy188I TCNGA 4 cut(s) 75, 97, 105, 127
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 21, 226
HpyCH4III ACNGT 2 cut(s) 50, 215
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 85, 205
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 193, 202
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 2 cut(s) 97, 179
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 29, 99, 132
LweI GCATC 2 cut(s) 172, 205
MaeII ACGT 1 cut(s) 246
MalI GATC 2 cut(s) 99, 181
MboI GATC 2 cut(s) 97, 179
MboII GAAGA 1 cut(s) 170
MluCI AATT 3 cut(s) 106, 168, 230
MnlI CCTC 1 cut(s) 9
Mph1103I ATGCAT 1 cut(s) 207
MseI TTAA 2 cut(s) 210, 256
MwoI GCNNNNNNNGC 3 cut(s) 137, 193, 202
NdeII GATC 2 cut(s) 97, 179
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 207
PagI TCATGA 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 6
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 210, 256
Sau3AI GATC 2 cut(s) 97, 179
SetI ASST 3 cut(s) 20, 133, 249
SfaNI GCATC 2 cut(s) 172, 205
SgeI CNNG 9 cut(s) 36, 56, 65, 98, 126, 159, 189, 195, 200
Sse9I AATT 3 cut(s) 106, 168, 230
TaaI ACNGT 2 cut(s) 50, 215
TaiI ACGT 1 cut(s) 249
TasI AATT 3 cut(s) 106, 168, 230
Tru1I TTAA 2 cut(s) 210, 256
Tru9I TTAA 2 cut(s) 210, 256
TspDTI ATGAA 3 cut(s) 72, 161, 171
XapI RAATTY 3 cut(s) 106, 168, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.