RchiOBHm_Chr2g0127991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001848
Physical Location & Seq
Reverse (-)
42848160 .. 42852257
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49981

Sequence Viewer

Length: 195 bp
ATGCAAAAAAGTGTACACATTGTTTATCTGCTGCTGTTCCTCTGTGCATCGTTTGCCATTATCCCAGTCTCTTGCTCTTATTCAGATCTGAGGAACAGTGTGCTGTCAACTTCTTTAGCTCTTTCGGCTTCAGATATAAATATTCGAGGTTGTATGTTTACAGCTATTGAAATTTTCTATGTAAATTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.11

Weight (kDa)

6.5

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 171, 184
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 2 cut(s) 119, 164
AluI AGCT 2 cut(s) 119, 164
Alw26I GTCTC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 2 cut(s) 171, 184
BbvI GCAGC 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 73
BglII AGATCT 1 cut(s) 85
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 73
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 1 cut(s) 65
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 53, 125
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 103
Csp6I GTAC 1 cut(s) 14
CviJI RGCY 3 cut(s) 119, 128, 164
CviKI_1 RGCY 3 cut(s) 119, 128, 164
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 114
FaiI YATR 3 cut(s) 137, 155, 180
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
FspEI CC 7 cut(s) 53, 70, 76, 77, 78, 110, 132
GluI GCNGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
Hpy166II GTNNAC 4 cut(s) 14, 16, 108, 159
Hpy188I TCNGA 3 cut(s) 85, 90, 133
Hpy8I GTNNAC 4 cut(s) 14, 16, 108, 159
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 4, 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 125
HpyF3I CTNAG 1 cut(s) 89
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 56
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MflI RGATCY 1 cut(s) 85
MluCI AATT 2 cut(s) 171, 184
MnlI CCTC 3 cut(s) 50, 84, 140
MseI TTAA 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 53, 125
NdeII GATC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 193
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 85
SetI ASST 3 cut(s) 121, 151, 166
SfaNI GCATC 1 cut(s) 56
SgeI CNNG 3 cut(s) 77, 84, 158
Sse9I AATT 2 cut(s) 171, 184
SspI AATATT 1 cut(s) 142
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 171, 184
TatI WGTACW 1 cut(s) 13
Tru1I TTAA 1 cut(s) 193
Tru9I TTAA 1 cut(s) 193
TscAI CASTG 1 cut(s) 103
TseI GCWGC 1 cut(s) 31
TspRI CASTG 1 cut(s) 103
XapI RAATTY 2 cut(s) 171, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.