RchiOBHm_Chr7g0233851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001848
Physical Location & Seq
Reverse (-)
58350361 .. 58353347
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20961

Sequence Viewer

Length: 264 bp
ATGGTGGTGGCTCTTGTGTCTCGAATCACCTACGGCTGCGAGACCGCGACCTCCGCCGCCGCCACCAACCCCAACTTGGTTTTGGGTTCGTCTTTGGCTTTGGATTGGGTACTCGAATCGCTGGGCTACGAGTACGACGCTCTCTCAAATCCTTGTCTGCTCGTAGAAGGGCAAGATCTCATACTCGATTCAGCAGGCGTTGATTGGCCTCTCAGCTATGTACGAATCCAGCTGCCTAATCTAAGATTGGGAAGTGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.34

Weight (kDa)

4.11

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 4 cut(s) 45, 54, 57, 60
AfaI GTAC 3 cut(s) 111, 134, 222
AfiI CCNNNNNNNGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 216, 232
AluI AGCT 2 cut(s) 216, 232
Alw26I GTCTC 2 cut(s) 24, 35
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 36, 232
AsuHPI GGTGA 1 cut(s) 19
BbvI GCAGC 2 cut(s) 23, 219
BceAI ACGGC 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 24, 35
BglII AGATCT 1 cut(s) 175
BisI GCNGC 4 cut(s) 37, 57, 60, 233
BlsI GCNGC 4 cut(s) 38, 58, 61, 234
BsaI GGTCTC 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 23, 219
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 24, 35
BsnI GGCC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 4 cut(s) 45, 54, 57, 60
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 35
BssMI GATC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 212, 242
BstFNI CGCG 1 cut(s) 47
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 2 cut(s) 24, 35
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 23, 219
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 196
CseI GACGC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 110, 133, 221
CviJI RGCY 7 cut(s) 11, 36, 98, 126, 208, 216, 232
CviKI_1 RGCY 7 cut(s) 11, 36, 98, 126, 208, 216, 232
CviQI GTAC 3 cut(s) 110, 133, 221
DdeI CTNAG 2 cut(s) 212, 242
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 35
FaiI YATR 2 cut(s) 182, 219
Fnu4HI GCNGC 4 cut(s) 37, 57, 60, 233
Fsp4HI GCNGC 4 cut(s) 37, 57, 60, 233
GluI GCNGC 4 cut(s) 37, 57, 60, 233
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 208
HgaI GACGC 1 cut(s) 146
HinfI GANTC 4 cut(s) 24, 116, 188, 225
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 212, 242
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 3 cut(s) 107, 180, 242
Lsp1109I GCAGC 2 cut(s) 23, 219
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MflI RGATCY 1 cut(s) 175
MnlI CCTC 2 cut(s) 61, 219
MspA1I CMGCKG 1 cut(s) 232
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 175
PfeI GAWTC 4 cut(s) 24, 116, 188, 225
PkrI GCNGC 4 cut(s) 38, 58, 61, 234
PspFI CCCAGC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 3 cut(s) 111, 134, 222
RsaNI GTAC 3 cut(s) 110, 133, 221
SatI GCNGC 4 cut(s) 37, 57, 60, 233
Sau3AI GATC 1 cut(s) 175
SetI ASST 4 cut(s) 32, 53, 218, 234
SsiI CCGC 4 cut(s) 45, 54, 57, 60
TaqI TCGA 3 cut(s) 22, 114, 186
TauI GCSGC 2 cut(s) 59, 62
TfiI GAWTC 4 cut(s) 24, 116, 188, 225
TseI GCWGC 2 cut(s) 36, 232
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.