Rh2DG254900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
27107294 .. 27110199
2906 bp
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UTR
Exon/CDS
Intron
Rh2DG254900.1

Sequence Viewer

Length: 486 bp
ATGTTTAGTGGTGGTGGCTCTTGTGTCTCGAATCACCTACGGCTGCGAGACCCGACCTCCGCCGCCGCCACCAACCCCAACTTGGTTTTGGGTTCGTCTTTGGCTTTGGATTGGGTACTCGAATCGCTGGGCTACGAGTACGACACTCTCTCAAATCCTTGTCTGCTCGTAGAATCTTGTCCTTTCGCTCTATCATTCATTCCAAGTGTCCTCCCGACATTCCTGCACTCTCCCACTGTTTCAGTTATGGCACCGAGAATCCAATGGACAAGAACAAAAAGGTTGTTAGAAGAAAATCATGATGAAGGTCAAGGTACTGAAAAAAGAATGGAAGAGGTCTGCGATGGTAATAGTTTTTCTGCCTCAGTAATTGAAGCTGAAAGGACTTTTTCTACTAGAGGAACAAATTCCAAAATTCGATCAAGAAGCTGGAAACAAACATCTGAACCAGCAATCACAAAAAATAGTCAGCATACTCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.78

Weight (kDa)

6.42

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AciI CCGC 3 cut(s) 60, 63, 66
AcsI RAATTY 2 cut(s) 406, 414
AfaI GTAC 3 cut(s) 117, 140, 316
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 374
AluBI AGCT 2 cut(s) 377, 429
AluI AGCT 2 cut(s) 377, 429
Alw26I GTCTC 2 cut(s) 31, 42
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 2 cut(s) 406, 414
Asp700I GAANNNNTTC 1 cut(s) 406
AsuHPI GGTGA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 30
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BcoDI GTCTC 2 cut(s) 31, 42
BfaI CTAG 1 cut(s) 396
BisI GCNGC 3 cut(s) 44, 63, 66
BlsI GCNGC 3 cut(s) 45, 64, 67
BmiI GGNNCC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 31, 42
Bso31I GGTCTC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 419
BspACI CCGC 3 cut(s) 60, 63, 66
BspCNI CTCAG 1 cut(s) 377
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 42
BssMI GATC 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 364
BstKTI GATC 1 cut(s) 422
BstMAI GTCTC 2 cut(s) 31, 42
BstMBI GATC 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 298
Csp6I GTAC 3 cut(s) 116, 139, 315
CviAII CATG 1 cut(s) 299
CviJI RGCY 6 cut(s) 18, 43, 104, 132, 377, 429
CviKI_1 RGCY 6 cut(s) 18, 43, 104, 132, 377, 429
CviQI GTAC 3 cut(s) 116, 139, 315
DdeI CTNAG 1 cut(s) 364
DpnI GATC 1 cut(s) 421
DpnII GATC 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 248, 300, 474
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 44, 63, 66
Fsp4HI GCNGC 3 cut(s) 44, 63, 66
FspBI CTAG 1 cut(s) 396
GluI GCNGC 3 cut(s) 44, 63, 66
GsaI CCCAGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 302
HinfI GANTC 4 cut(s) 31, 122, 173, 258
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 4 cut(s) 28, 214, 299, 423
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 1 cut(s) 419
LpnPI CCDG 4 cut(s) 113, 236, 415, 462
Lsp1109I GCAGC 1 cut(s) 30
MaeI CTAG 1 cut(s) 396
MalI GATC 1 cut(s) 421
MboI GATC 1 cut(s) 419
MboII GAAGA 2 cut(s) 302, 344
MluCI AATT 3 cut(s) 369, 406, 414
MnlI CCTC 5 cut(s) 67, 221, 328, 373, 392
MroXI GAANNNNTTC 1 cut(s) 406
NdeII GATC 1 cut(s) 419
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 252
PagI TCATGA 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 4 cut(s) 31, 122, 173, 258
PkrI GCNGC 3 cut(s) 45, 64, 67
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 252
RsaI GTAC 3 cut(s) 117, 140, 316
RsaNI GTAC 3 cut(s) 116, 139, 315
SatI GCNGC 3 cut(s) 44, 63, 66
Sau3AI GATC 1 cut(s) 419
SetI ASST 8 cut(s) 39, 59, 284, 310, 316, 339, 379, 431
Sse9I AATT 3 cut(s) 369, 406, 414
SsiI CCGC 3 cut(s) 60, 63, 66
SspMI CTAG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 29, 120, 418
TasI AATT 3 cut(s) 369, 406, 414
TauI GCSGC 2 cut(s) 65, 68
TfiI GAWTC 4 cut(s) 31, 122, 173, 258
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 187, 318
TspRI CASTG 1 cut(s) 241
XapI RAATTY 2 cut(s) 406, 414
XcmI CCANNNNNNNNNTGG 2 cut(s) 79, 85
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.