Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001848

Physical Location & Seq

Genomic Coordinates Forward (+)

24139917 .. 24143846

Gene Structure 3930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37593

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGCAAAAAAGTGTACGTATCATTGCAATGCCACTGTTCCTTGGTCTGCTGTTTATCGTTGTCTCCATCTTTTATTCTTATTCAGATTTTGGGAACAGTGTGCTGTCGGATAGTTTAATTTTCTGCAATTCAGCTTTTTGGACAACCTCCACAACTAATCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

55

Amino Acids

6.22

Weight (kDa)

6.69

Isoelectric Point (pI)

15.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344671 RchiOBHm_Chr2g0103891 RchiOBHm_Chr2g0125481 RchiOBHm_Chr2g0127991 RchiOBHm_Chr4g0404361 RchiOBHm_Chr6g0293921 RchiOBHm_Chr7g0183991 RchiOBHm_Chr7g0200701 RchiOBHm_Chr7g0203451 RchiOBHm_Chr7g0233851
rosa_laevigata	RLG00000009445
rosa_multiflora	Rmu_sc0001762.1_g000048 Rmu_ssc0000198.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431470 Rroxscaffold_1G00006800 Rroxscaffold_1G00038540 Rroxscaffold_1G00072610 Rroxscaffold_2G00078350 Rroxscaffold_2G00079900 Rroxscaffold_2G00125220 Rroxscaffold_3G00246630 Rroxscaffold_4G00306170 Rroxscaffold_4G00314800 Rroxscaffold_4G00317460 Rroxscaffold_4G00319930 Rroxscaffold_5G00343110 Rroxscaffold_6G00395760 Rroxscaffold_6G00421380 Rroxscaffold_7G00160650
rosa_rugosa	Rorug01G0217800 Rorug03G0274300 Rorug04G0088400 Rorug05G0172900 Rorug07G0221500
rosa_samantha	Rh1BG311700 Rh1DG110800 Rh2AG655300 Rh2BG324100 Rh2BG414100 Rh2DG254900 Rh3DG077200 Rh4BG304400 Rh5DG244400 Rh7BG056200
rosa_wichuraiana	Rw1G008450 Rw2G032850 Rw4G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	15
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	67
BccI	CCATC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	40
Bse3DI	GCAATG	2 cut(s)	21, 33
BseDI	CCNNGG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	21, 33
BsmAI	GTCTC	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	21, 33
BssECI	CCNNGG	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	36, 98
BstBAI	YACGTR	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	67
BstSNI	TACGTA	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	32, 103
Csp6I	GTAC	1 cut(s)	14
CviJI	RGCY	1 cut(s)	134
CviKI_1	RGCY	1 cut(s)	134
CviQI	GTAC	1 cut(s)	14
Eco105I	TACGTA	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FspBI	CTAG	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	85, 109
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	36, 98
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	4, 26, 126
HpySE526I	ACGT	1 cut(s)	16
MaeI	CTAG	1 cut(s)	166
MaeII	ACGT	1 cut(s)	16
MluCI	AATT	2 cut(s)	117, 127
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	157
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	17
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	116
SetI	ASST	3 cut(s)	19, 136, 149
SgeI	CNNG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	26
SnaBI	TACGTA	1 cut(s)	17
Sse9I	AATT	2 cut(s)	117, 127
SspMI	CTAG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	36, 98
TaiI	ACGT	1 cut(s)	19
TasI	AATT	2 cut(s)	117, 127
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	39, 103
TspRI	CASTG	2 cut(s)	39, 103
XspI	CTAG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.