Rroxscaffold_1G00072610

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
93622225 .. 93627419
5195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072610.1

Sequence Viewer

Length: 456 bp
ATGGCTTCAAGCATCCCAAAACAAAAGGCAAAAGATATTTGCAATTTGATCATACGGAAGATCATAATAATTAAGAAATGGGTCGTTGCATCAAATGCGTCGAATTCTCATTCTATTCACCAACAAGATTATATGCAAAAGCGTTTAAACATCGTTCTGCTGCCACTGTTCCTTTGTGTATTGGTTAACACTATCTTGATCTCTCATTCTTATTCAGGTGGACAAGAAGTAAAGAGATTGTTACAGGAGTATGAAGATGAAAATCATAATGCTGAAAGGGAAGTCCAAGAAATATCTAATGACCAGAATGTAATTGGTAGTATATCTGATACTGGAACCGCAGTTTCTGGTAGGGACGAAGACCATCAAATTCATCCAAGATCAAGGCGTGGTGAGCATCCATTATCGAATTTAAACTGTTTATCTGCTTTCTGTTTACAAGTTCAAAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.08

Weight (kDa)

7.74

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 339
AcsI RAATTY 3 cut(s) 103, 369, 409
AgsI TTSAA 2 cut(s) 9, 446
AlwNI CAGNNNCTG 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 3 cut(s) 103, 369, 409
AsuHPI GGTGA 2 cut(s) 110, 404
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 372
BclI TGATCA 1 cut(s) 48
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 337
BmsI GCATC 3 cut(s) 21, 98, 406
BpiI GAAGAC 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 261
BseGI GGATG 3 cut(s) 12, 373, 397
BseJI GATNNNNATC 1 cut(s) 261
BseNI ACTGG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 368
Bsp143I GATC 4 cut(s) 48, 60, 198, 380
BspACI CCGC 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 337
BssMI GATC 4 cut(s) 48, 60, 198, 380
Bst4CI ACNGT 2 cut(s) 168, 419
BstAPI GCANNNNNTGC 1 cut(s) 95
BstF5I GGATG 3 cut(s) 12, 373, 397
BstKTI GATC 4 cut(s) 51, 63, 201, 383
BstMBI GATC 4 cut(s) 48, 60, 198, 380
BstMWI GCNNNNNNNGC 2 cut(s) 95, 394
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 366
BtsCI GGATG 3 cut(s) 12, 373, 397
BtsIMutI CAGTG 1 cut(s) 164
CaiI CAGNNNCTG 1 cut(s) 347
CseI GACGC 1 cut(s) 87
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 4 cut(s) 50, 62, 200, 382
DpnII GATC 4 cut(s) 48, 60, 198, 380
DraI TTTAAA 2 cut(s) 147, 414
EcoRI GAATTC 1 cut(s) 103
FaiI YATR 7 cut(s) 53, 65, 132, 134, 252, 267, 323
FaqI GGGAC 1 cut(s) 368
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 2 cut(s) 360, 384
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HgaI GACGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HpaI GTTAAC 1 cut(s) 187
HphI GGTGA 2 cut(s) 110, 404
Hpy166II GTNNAC 3 cut(s) 187, 221, 437
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 3 cut(s) 187, 221, 437
Hpy99I CGWCG 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 168, 419
HpyCH4V TGCA 3 cut(s) 42, 89, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 394
Ksp22I TGATCA 1 cut(s) 48
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 4 cut(s) 48, 60, 198, 380
LpnPI CCDG 5 cut(s) 201, 230, 317, 318, 333
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 3 cut(s) 21, 98, 406
MaeIII GTNAC 1 cut(s) 240
MalI GATC 4 cut(s) 50, 62, 200, 382
MboI GATC 4 cut(s) 48, 60, 198, 380
MboII GAAGA 3 cut(s) 70, 266, 371
MluCI AATT 6 cut(s) 43, 69, 103, 312, 369, 409
MseI TTAA 4 cut(s) 72, 146, 186, 413
MssI GTTTAAAC 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 95, 394
NdeII GATC 4 cut(s) 48, 60, 198, 380
NlaIV GGNNCC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 162
PmeI GTTTAAAC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 347
SaqAI TTAA 4 cut(s) 72, 146, 186, 413
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 4 cut(s) 48, 60, 198, 380
SetI ASST 1 cut(s) 220
SfaNI GCATC 3 cut(s) 21, 98, 406
Sse9I AATT 6 cut(s) 43, 69, 103, 312, 369, 409
SsiI CCGC 1 cut(s) 339
TaaI ACNGT 2 cut(s) 168, 419
TaqI TCGA 2 cut(s) 101, 407
TasI AATT 6 cut(s) 43, 69, 103, 312, 369, 409
Tru1I TTAA 4 cut(s) 72, 146, 186, 413
Tru9I TTAA 4 cut(s) 72, 146, 186, 413
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 267, 273, 362
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 171
XapI RAATTY 3 cut(s) 103, 369, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.